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	Gene summary
	Spatial pattern genes
	Spatial pattern pathway
	Cell cell interactions using single cell data
	Cell-cell/spot-spot interactions using spatial data
	Transcription factors events
	Related drugs with this gene
	Related diseases with this gene

Spatial pattern gene: Snrnp200 (spascer ID:320632)

Gene summary for Snrnp200

Gene summary

Gene information
	Species	Mouse
	Gene symbol	Snrnp200
	Gene ID	320632
	Gene name	small nuclear ribonucleoprotein 200 (U5)
	Synonyms	A330064G03Rik\|Ascc3l1\|BC011390\|HELIC2\|U5-200-KD\|U5-200KD
	Cytomap	2 F1\|2 61.84 cM
	Type of gene	protein-coding
	Description	U5 small nuclear ribonucleoprotein 200 kDa helicaseBRR2 homologU5 snRNP-specific protein, 200 kDa (DEXH RNA helicase family)activating signal cointegrator 1 complex subunit 3-like 1
	Modification date	20220424
	UniProtAcc	Q6P4T2

Gene ontology with evidence Inferred from Direct Assay (IDA) and Biological aspect of Ancestor (IBA).

Gene	GO ID	GO term	PubMed ID	Category
Snrnp200	GO:0000388	spliceosome conformational change to release U4 (or U4atac) and U1 (or U11)	21873635	Process
Snrnp200	GO:0003724	RNA helicase activity	21873635	Function
Snrnp200	GO:0005681	spliceosomal complex	21873635	Component

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Spatial pattern events for Snrnp200

spatial pattern gene list.

Gene symbol	Species	Tissue	Replication	PMID	Adj p-value
Snrnp200	Mouse	Brain	rep_4	35141374	2.74e-09
Snrnp200	Mouse	Embryo	rep_13	33188776	8.98e-06
Snrnp200	Mouse	Kidney	CLP	34003797	1.57e-08
Snrnp200	Mouse	Kidney	rep_1	34853151	4.13e-15
Snrnp200	Mouse	Kidney	rep_3	34853151	2.56e-11
Snrnp200	Mouse	Brain	rep_1	33469025	8.30e-07
Snrnp200	Mouse	Testicle	rep_4	34731600	1.89e-14
Snrnp200	Mouse	Lung	rep_1	35290801	1.21e-14
Snrnp200	Mouse	Lung	rep_3	35290801	5.26e-15
Snrnp200	Mouse	Lung	rep_4	35290801	1.70e-07

spatial pattern gene map.(click to enlarge the image in a new window)

H&E staining (if available)	Singel gene map
Brain_rep_4_H&E
Kidney_CLP_H&E
Kidney_rep_1_H&E
Kidney_rep_3_H&E
Brain_rep_1_H&E
Lung_rep_1_H&E
Lung_rep_3_H&E
Lung_rep_4_H&E

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Spatial pattern pathway has Snrnp200 envolved

Symbol	Pathway	Species	Tissue type	Replication	P-value
Snrnp200	GOBP_Mrna_Metabolic_Process	Mouse	Spinal cord	CN94_E1	5.9e-06
Snrnp200	GOBP_Ossification	Mouse	Spinal cord	CN94_E1	7.4e-06
Snrnp200	GOBP_Osteoblast_Differentiation	Mouse	Spinal cord	CN94_E1	9.0e-07
Snrnp200	GOBP_Mrna_Processing	Mouse	Spinal cord	L7bCN02_E1	5.5e-06
Snrnp200	GOBP_Spliceosomal_Conformational_Changes_To_Generate_Catalytic_Conformation	Mouse	Spinal cord	L7CN44_D1	2.9e-08
Snrnp200	GOBP_Mrna_Cis_Splicing_Via_Spliceosome	Mouse	Spinal cord	L7CN45_C1	9.9e-08
Snrnp200	GOBP_Ribonucleoprotein_Complex_Biogenesis	Mouse	Spinal cord	L7CN45_C1	1.4e-06
Snrnp200	GOBP_Ribonucleoprotein_Complex_Subunit_Organization	Mouse	Spinal cord	L7CN45_C1	1.2e-07
Snrnp200	GOBP_Rna_Processing	Mouse	Spinal cord	L7CN45_C1	2.2e-09
Snrnp200	GOBP_Rna_Splicing	Mouse	Spinal cord	L7CN45_C1	3.7e-08
Snrnp200	GOBP_Rna_Splicing_Via_Transesterification_Reactions	Mouse	Spinal cord	L7CN45_C1	1.8e-09
Snrnp200	GOBP_Spliceosomal_Complex_Assembly	Mouse	Spinal cord	L7CN45_C1	2.1e-07
Snrnp200	GOBP_Spliceosomal_Complex_Assembly	Mouse	Brain	rep_41	8.4e-06
Snrnp200	GOBP_Spliceosomal_Complex_Assembly	Mouse	Brain	rep_1	2.2e-11
Snrnp200	GOBP_Spliceosomal_Conformational_Changes_To_Generate_Catalytic_Conformation	Mouse	Brain	rep_1	3.7e-09
Snrnp200	GOBP_Mrna_Cis_Splicing_Via_Spliceosome	Mouse	Brain	rep_3	5.0e-185
Snrnp200	GOBP_Mrna_Metabolic_Process	Mouse	Brain	rep_3	3.9e-221
Snrnp200	GOBP_Mrna_Processing	Mouse	Brain	rep_3	4.7e-219
Snrnp200	GOBP_Ossification	Mouse	Brain	rep_3	6.7e-28
Snrnp200	GOBP_Osteoblast_Differentiation	Mouse	Brain	rep_3	7.4e-84
Snrnp200	GOBP_Ribonucleoprotein_Complex_Biogenesis	Mouse	Brain	rep_3	5.6e-32
Snrnp200	GOBP_Ribonucleoprotein_Complex_Subunit_Organization	Mouse	Brain	rep_3	6.1e-80
Snrnp200	GOBP_Rna_Processing	Mouse	Brain	rep_3	4.3e-140
Snrnp200	GOBP_Rna_Splicing	Mouse	Brain	rep_3	2.2e-224
Snrnp200	GOBP_Rna_Splicing_Via_Transesterification_Reactions	Mouse	Brain	rep_3	1.8e-234
Snrnp200	GOBP_Mrna_Cis_Splicing_Via_Spliceosome	Mouse	Embryo	rep_14	1.4e-19
Snrnp200	GOBP_Ribonucleoprotein_Complex_Biogenesis	Mouse	Embryo	rep_14	2.1e-33
Snrnp200	GOBP_Ribonucleoprotein_Complex_Subunit_Organization	Mouse	Embryo	rep_14	6.2e-25
Snrnp200	GOBP_Rna_Processing	Mouse	Embryo	rep_14	3.5e-14
Snrnp200	GOBP_Spliceosomal_Conformational_Changes_To_Generate_Catalytic_Conformation	Mouse	Embryo	rep_14	1.1e-49
Snrnp200	GOBP_Mrna_Metabolic_Process	Mouse	Embryo	rep_1	5.8e-21
Snrnp200	GOBP_Ossification	Mouse	Embryo	rep_2	6.7e-25
Snrnp200	GOBP_Osteoblast_Differentiation	Mouse	Embryo	rep_2	8.5e-10
Snrnp200	GOBP_Rna_Processing	Mouse	Embryo	rep_2	2.4e-14
Snrnp200	GOBP_Mrna_Cis_Splicing_Via_Spliceosome	Mouse	Kidney	rep_2	1.0e-64
Snrnp200	GOBP_Mrna_Metabolic_Process	Mouse	Kidney	rep_2	3.1e-08
Snrnp200	GOBP_Mrna_Processing	Mouse	Kidney	rep_2	5.0e-53
Snrnp200	GOBP_Ossification	Mouse	Kidney	rep_2	3.5e-66
Snrnp200	GOBP_Osteoblast_Differentiation	Mouse	Kidney	rep_2	1.6e-54
Snrnp200	GOBP_Ribonucleoprotein_Complex_Biogenesis	Mouse	Kidney	rep_2	1.3e-69
Snrnp200	GOBP_Ribonucleoprotein_Complex_Subunit_Organization	Mouse	Kidney	rep_2	3.3e-25
Snrnp200	GOBP_Rna_Processing	Mouse	Kidney	rep_2	1.1e-71
Snrnp200	GOBP_Rna_Splicing	Mouse	Kidney	rep_2	1.1e-33
Snrnp200	GOBP_Rna_Splicing_Via_Transesterification_Reactions	Mouse	Kidney	rep_2	8.8e-36
Snrnp200	GOBP_Spliceosomal_Complex_Assembly	Mouse	Kidney	rep_2	1.5e-73
Snrnp200	GOBP_Spliceosomal_Conformational_Changes_To_Generate_Catalytic_Conformation	Mouse	Kidney	rep_2	1.2e-10
Snrnp200	GOBP_Mrna_Metabolic_Process	Mouse	Liver	CN16-D2	5.2e-07
Snrnp200	GOBP_Mrna_Processing	Mouse	Liver	CN16-D2	4.8e-09
Snrnp200	GOBP_Rna_Splicing	Mouse	Liver	CN16-D2	2.4e-07
Snrnp200	GOBP_Rna_Splicing_Via_Transesterification_Reactions	Mouse	Liver	CN16-D2	2.0e-09
Snrnp200	GOBP_Spliceosomal_Complex_Assembly	Mouse	Liver	CN65-C1	5.7e-07
Snrnp200	GOBP_Spliceosomal_Conformational_Changes_To_Generate_Catalytic_Conformation	Mouse	Brain	rep_1	2.7e-05
Snrnp200	GOBP_Mrna_Cis_Splicing_Via_Spliceosome	Mouse	Lymph	MS-1	8.2e-07
Snrnp200	GOBP_Mrna_Metabolic_Process	Mouse	Lymph	MS-1	3.2e-11
Snrnp200	GOBP_Ossification	Mouse	Lymph	MS-1	3.4e-11
Snrnp200	GOBP_Osteoblast_Differentiation	Mouse	Lymph	MS-1	7.1e-09
Snrnp200	GOBP_Ribonucleoprotein_Complex_Biogenesis	Mouse	Lymph	MS-1	1.7e-07
Snrnp200	GOBP_Rna_Processing	Mouse	Lymph	MS-1	2.0e-09
Snrnp200	GOBP_Spliceosomal_Complex_Assembly	Mouse	Lymph	MS-1	4.7e-07
Snrnp200	GOBP_Spliceosomal_Complex_Assembly	Mouse	Brain	rep_4	2.2e-09
Snrnp200	GOBP_Spliceosomal_Conformational_Changes_To_Generate_Catalytic_Conformation	Mouse	Brain	rep_4	2.9e-11
Snrnp200	GOBP_Spliceosomal_Conformational_Changes_To_Generate_Catalytic_Conformation	Mouse	Brain	HP_ad_rep3	1.4e-11
Snrnp200	GOBP_Mrna_Cis_Splicing_Via_Spliceosome	Mouse	Brain	HP_ad_rep7	5.9e-07
Snrnp200	GOBP_Mrna_Metabolic_Process	Mouse	Brain	HP_ad_rep7	2.2e-09
Snrnp200	GOBP_Mrna_Processing	Mouse	Brain	HP_ad_rep7	2.3e-09
Snrnp200	GOBP_Ossification	Mouse	Brain	HP_ad_rep7	2.8e-09
Snrnp200	GOBP_Ribonucleoprotein_Complex_Biogenesis	Mouse	Brain	HP_ad_rep7	7.9e-07
Snrnp200	GOBP_Ribonucleoprotein_Complex_Subunit_Organization	Mouse	Brain	HP_ad_rep7	8.3e-08
Snrnp200	GOBP_Rna_Processing	Mouse	Brain	HP_ad_rep7	2.7e-09
Snrnp200	GOBP_Rna_Splicing	Mouse	Brain	HP_ad_rep7	5.3e-10
Snrnp200	GOBP_Rna_Splicing_Via_Transesterification_Reactions	Mouse	Brain	HP_ad_rep7	2.3e-11
Snrnp200	GOBP_Spliceosomal_Complex_Assembly	Mouse	Brain	HP_ad_rep7	1.6e-13
Snrnp200	GOBP_Osteoblast_Differentiation	Mouse	Brain	HP_polb_rep9	5.2e-09

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Snrnp200 function as liang/receptor in single cell data

Tissue

Source

SourceCell

Target

TargetCell

PMID

Group

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Snrnp200 function as liang/receptor across spatial transcriptomics tissue

Interactions using deconvoluted spatial data.

Ligand

Receptor

LR pair

Tissue

Replication

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Transcription factor for Snrnp200 envolved

Transcription factor analysis using single cell data.

Tissue

Group

Cell types

Target genes

Rss score

Motif information.

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Related Drugs for Snrnp200

Approved drugs targeting this gene.
(DrugBank Version 5.1.9 2022-01-04)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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Related Diseases for Snrnp200

Diseases associated with this gene.
(DisGeNet 7.0)

Gene	Disease ID	Disease name	Pubmeds	Source
Snrnp200	C1835895	RETINITIS PIGMENTOSA 33 (disorder)	8	CTD_human;GENOMICS_ENGLAND;UNIPROT