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Spatial pattern gene: Yrdc (spascer ID:230734) |
Gene summary for Yrdc |
 Gene summary |
| Gene information | |
| Species | Mouse | Gene symbol | Yrdc | Gene ID | 230734 |
| Gene name | yrdC domain containing (E.coli) |
| Synonyms | AV303379|BC023823|IRIP|ITIP |
| Cytomap | 4|4 D2.2 |
| Type of gene | protein-coding |
| Description | yrdC domain-containing protein, mitochondrialIschemia/reperfusion-inducible proteinmIRIP |
| Modification date | 20220424 |
| UniProtAcc | Q3U5F4 |
| Gene ontology with evidence Inferred from Direct Assay (IDA) and Biological aspect of Ancestor (IBA). |
| Gene | GO ID | GO term | PubMed ID | Category |
| Yrdc | GO:0000049 | tRNA binding | 21873635 | Function |
| Yrdc | GO:0005737 | cytoplasm | 21873635 | Component |
| Yrdc | GO:0006450 | regulation of translational fidelity | 21873635 | Process |
| Yrdc | GO:0016779 | nucleotidyltransferase activity | 21873635 | Function |
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Spatial pattern events for Yrdc |
| spatial pattern gene list. |
| Gene symbol | Species | Tissue | Replication | PMID | Adj p-value |
| Yrdc | Mouse | Brain | S6 | 34413515 | 1.71e-08 |
| Yrdc | Mouse | Brain | S7 | 34413515 | 6.06e-06 |
| Yrdc | Mouse | Kidney | CLP | 34003797 | 2.19e-15 |
| Yrdc | Mouse | Kidney | IRI | 34003797 | 1.56e-06 |
| Yrdc | Mouse | Brain | rep_3 | 35027729 | 5.44e-06 |
| Yrdc | Mouse | Brain | rep_5 | 35027729 | 2.79e-07 |
| Yrdc | Mouse | Intestine | rep_4 | 35149721 | 1.85e-06 |
| Yrdc | Mouse | Lymph | A1 | 0 | 3.29e-15 |
| Yrdc | Mouse | Lymph | B1 | 0 | 1.33e-07 |
| Yrdc | Mouse | Brain | rep_1 | 35210624 | 4.88e-08 |
| Yrdc | Mouse | Brain | rep_2 | 35210624 | 1.09e-07 |
| spatial pattern gene map.(click to enlarge the image in a new window) |
| H&E staining (if available) | Singel gene map |
Kidney_CLP_H&E  |  |
Kidney_IRI_H&E  |  |
Brain_rep_3_H&E  |  |
Brain_rep_5_H&E  |  |
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Spatial pattern pathway has Yrdc envolved |
| Symbol | Pathway | Species | Tissue type | Replication | P-value |
| Yrdc | GOBP_Regulation_Of_Transport | Mouse | Spinal cord | CN94_E1 | 5.3e-07 |
| Yrdc | GOBP_Regulation_Of_Translational_Fidelity | Mouse | Spinal cord | L7CN47_D1 | 7.4e-06 |
| Yrdc | GOBP_Negative_Regulation_Of_Transport | Mouse | Brain | rep_1 | 1.2e-09 |
| Yrdc | GOBP_Regulation_Of_Transport | Mouse | Brain | rep_1 | 3.9e-15 |
| Yrdc | GOBP_Regulation_Of_Translational_Fidelity | Mouse | Brain | rep_7 | 2.6e-47 |
| Yrdc | GOBP_Negative_Regulation_Of_Transport | Mouse | Embryo | rep_4 | 7.5e-23 |
| Yrdc | GOBP_Regulation_Of_Transport | Mouse | Kidney | Nep | 2.6e-47 |
| Yrdc | GOBP_Negative_Regulation_Of_Transport | Mouse | Kidney | rep_2 | 4.0e-19 |
| Yrdc | GOBP_Regulation_Of_Translational_Fidelity | Mouse | Kidney | rep_2 | 7.9e-87 |
| Yrdc | GOBP_Regulation_Of_Transport | Mouse | Kidney | rep_2 | 2.4e-58 |
| Yrdc | GOBP_Regulation_Of_Transport | Mouse | Liver | CN73-C1 | 1.8e-07 |
| Yrdc | GOBP_Negative_Regulation_Of_Transport | Mouse | Lymph | MS-1 | 1.0e-17 |
| Yrdc | GOBP_Regulation_Of_Translational_Fidelity | Mouse | Lymph | MS-1 | 1.9e-11 |
| Yrdc | GOBP_Regulation_Of_Transport | Mouse | Lymph | MS-1 | 1.4e-12 |
| Yrdc | GOBP_Regulation_Of_Translational_Fidelity | Mouse | Brain | rep_4 | 1.1e-101 |
| Yrdc | GOBP_Regulation_Of_Translational_Fidelity | Mouse | Brain | HP_ad_rep3 | 3.2e-08 |
| Yrdc | GOBP_Negative_Regulation_Of_Transport | Mouse | Brain | HP_ad_rep7 | 1.7e-07 |
| Yrdc | GOBP_Regulation_Of_Transport | Mouse | Brain | HP_ad_rep7 | 9.2e-09 |
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Yrdc function as liang/receptor in single cell data |
| Tissue | Source | SourceCell | Target | TargetCell | PMID | Group |
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Yrdc function as liang/receptor across spatial transcriptomics tissue |
| Interactions using deconvoluted spatial data. |
| Ligand | Receptor | LR pair | Tissue | Replication |
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Transcription factor for Yrdc envolved |
| Transcription factor analysis using single cell data. |
| TF | Tissue | Group | Cell types | Target genes | Rss score |
| Motif information. |
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Related Drugs for Yrdc |
| Approved drugs targeting this gene. (DrugBank Version 5.1.9 2022-01-04) |
| Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for Yrdc |
| Diseases associated with this gene. (DisGeNet 7.0) |
| Gene | Disease ID | Disease name | Pubmeds | Source |
