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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

Spatial pattern genes

Soverview

Spatial pattern pathway

Soverview

Cell cell interactions using single cell data

Soverview

Cell-cell/spot-spot interactions using spatial data

Soverview

Transcription factors events

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Related drugs with this gene

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Related diseases with this gene

Spatial pattern gene: Csde1 (spascer ID:229663)

Gene summary for Csde1

check button Gene summary
Gene information
SpeciesMouse
Gene symbol

Csde1

Gene ID

229663

Gene namecold shock domain containing E1, RNA binding
SynonymsAA960392|BC016898|D3Jfr1|mKIAA0885|unr
Cytomap3 F2.2|3 45.25 cM
Type of geneprotein-coding
Descriptioncold shock domain-containing protein E1NRAS-relatedupstream of NRAS
Modification date20220424
UniProtAcc

Q91W50


check button Gene ontology with evidence Inferred from Direct Assay (IDA) and Biological aspect of Ancestor (IBA).
GeneGO IDGO termPubMed IDCategory

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Spatial pattern events for Csde1

check buttonspatial pattern gene list.
Gene symbolSpeciesTissueReplicationPMIDAdj p-value
Csde1MouseBrainS2 344135151.56e-15
Csde1MouseBrainS6 344135154.44e-13
Csde1MouseBrain24B 326376227.11e-13
Csde1MouseBrainrep_4 351413743.55e-07
Csde1MouseEmbryorep_4 331887762.34e-11
Csde1MouseKidneyCLP 340037971.13e-13
Csde1MouseKidneyIRI 340037973.80e-10
Csde1MouseKidneySham 340037974.22e-07
Csde1MouseKidneyrep_3 348531517.77e-08
Csde1MouseBrainrep_1 350277296.21e-07
Csde1MouseBrainrep_2 350277292.83e-15
Csde1MouseBrainrep_3 350277296.23e-14
Csde1MouseBrainrep_4 350277297.79e-11
Csde1MouseBrainrep_5 350277297.77e-14
Csde1MouseIntestinerep_3 351497215.78e-13
Csde1MouseIntestinerep_4 351497212.30e-15
Csde1MouseBrainB05_D2 327023145.46e-09
Csde1MouseLungrep_1 352908018.15e-14
Csde1MouseLungrep_2 352908018.75e-15
Csde1MouseLungrep_3 352908015.64e-07
Csde1MouseLungrep_4 352908013.04e-15
Csde1MouseBrainrep_5 352106242.43e-06

check buttonspatial pattern gene map.(click to enlarge the image in a new window)

H&E staining (if available)Singel gene map
Brain_rep_4_H&E
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Kidney_CLP_H&E
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Kidney_IRI_H&E
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Kidney_Sham_H&E
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Kidney_rep_3_H&E
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Brain_rep_1_H&E
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Brain_rep_2_H&E
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Brain_rep_3_H&E
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Brain_rep_4_H&E
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Brain_rep_5_H&E
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Brain_B05_D2_H&E
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Lung_rep_1_H&E
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Lung_rep_2_H&E
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Lung_rep_3_H&E
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Lung_rep_4_H&E
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Spatial pattern pathway has Csde1 envolved


SymbolPathwaySpeciesTissue typeReplicationP-value
Csde1GOBP_Developmental_Process_Involved_In_ReproductionMouseSpinal cordCN94_E1 3.2e-07
Csde1GOBP_Mrna_Metabolic_ProcessMouseSpinal cordCN94_E1 5.9e-06
Csde1GOBP_Organelle_AssemblyMouseSpinal cordCN94_E1 9.5e-06
Csde1GOBP_ReproductionMouseSpinal cordCN94_E1 7.8e-08
Csde1GOBP_Stress_Granule_AssemblyMouseSpinal cordCN94_E1 7.3e-06
Csde1GOBP_Amide_Biosynthetic_ProcessMouseSpinal cordL7CN45_C1 2.2e-09
Csde1GOBP_Cellular_Amide_Metabolic_ProcessMouseSpinal cordL7CN45_C1 3.4e-09
Csde1GOBP_Ires_Dependent_Viral_Translational_InitiationMouseSpinal cordL7CN45_C1 7.6e-09
Csde1GOBP_Macromolecule_Catabolic_ProcessMouseSpinal cordL7CN45_C1 7.5e-06
Csde1GOBP_Negative_Regulation_Of_Gene_ExpressionMouseSpinal cordL7CN45_C1 5.6e-06
Csde1GOBP_Nuclear_Transcribed_Mrna_Catabolic_ProcessMouseSpinal cordL7CN45_C1 8.4e-07
Csde1GOBP_Organic_Cyclic_Compound_Catabolic_ProcessMouseSpinal cordL7CN45_C1 5.6e-06
Csde1GOBP_Organonitrogen_Compound_Biosynthetic_ProcessMouseSpinal cordL7CN45_C1 5.6e-08
Csde1GOBP_Peptide_Biosynthetic_ProcessMouseSpinal cordL7CN45_C1 3.5e-08
Csde1GOBP_Peptide_Metabolic_ProcessMouseSpinal cordL7CN45_C1 3.4e-09
Csde1GOBP_Posttranscriptional_Regulation_Of_Gene_ExpressionMouseSpinal cordL7CN45_C1 7.4e-09
Csde1GOBP_Regulation_Of_Cellular_Amide_Metabolic_ProcessMouseSpinal cordL7CN45_C1 2.4e-08
Csde1GOBP_Regulation_Of_Translational_InitiationMouseSpinal cordL7CN45_C1 7.9e-07
Csde1GOBP_Rna_Catabolic_ProcessMouseSpinal cordL7CN45_C1 3.0e-07
Csde1GOBP_Translational_InitiationMouseSpinal cordL7CN45_C1 1.6e-08
Csde1GOBP_Viral_Gene_ExpressionMouseSpinal cordL7CN45_C1 5.3e-10
Csde1GOBP_Viral_TranslationMouseSpinal cordL7CN45_C1 5.1e-08
Csde1GOBP_Male_Sex_DifferentiationMouseSpinal cordL7CN47_C1 4.2e-06
Csde1GOBP_Biological_Process_Involved_In_Symbiotic_InteractionMouseSpinal cordL7CN97_E2 6.8e-06
Csde1GOBP_Negative_Regulation_Of_Gene_ExpressionMouseBrainrep_27 4.7e-05
Csde1GOBP_Stress_Granule_AssemblyMouseBrainrep_41 4.7e-05
Csde1GOBP_Ires_Dependent_Viral_Translational_InitiationMouseBrainrep_71 2.3e-05
Csde1GOBP_Viral_TranslationMouseBrainrep_75 4.7e-05
Csde1GOBP_Amide_Biosynthetic_ProcessMouseBrainrep_3 2.5e-86
Csde1GOBP_Biological_Process_Involved_In_Symbiotic_InteractionMouseBrainrep_31.9e-146
Csde1GOBP_Cellular_Amide_Metabolic_ProcessMouseBrainrep_3 2.1e-87
Csde1GOBP_Development_Of_Primary_Sexual_CharacteristicsMouseBrainrep_32.5e-171
Csde1GOBP_Developmental_Process_Involved_In_ReproductionMouseBrainrep_32.9e-159
Csde1GOBP_Ires_Dependent_Viral_Translational_InitiationMouseBrainrep_37.9e-217
Csde1GOBP_Macromolecule_Catabolic_ProcessMouseBrainrep_31.7e-159
Csde1GOBP_Male_Sex_DifferentiationMouseBrainrep_34.2e-151
Csde1GOBP_Mrna_Metabolic_ProcessMouseBrainrep_33.9e-221
Csde1GOBP_Negative_Regulation_Of_Gene_ExpressionMouseBrainrep_31.1e-139
Csde1GOBP_Nuclear_Transcribed_Mrna_Catabolic_ProcessMouseBrainrep_31.5e-183
Csde1GOBP_Organelle_AssemblyMouseBrainrep_32.0e-160
Csde1GOBP_Organic_Cyclic_Compound_Catabolic_ProcessMouseBrainrep_31.2e-230
Csde1GOBP_Organonitrogen_Compound_Biosynthetic_ProcessMouseBrainrep_32.9e-144
Csde1GOBP_Peptide_Biosynthetic_ProcessMouseBrainrep_3 2.1e-69
Csde1GOBP_Peptide_Metabolic_ProcessMouseBrainrep_3 1.3e-86
Csde1GOBP_Posttranscriptional_Regulation_Of_Gene_ExpressionMouseBrainrep_38.5e-206
Csde1GOBP_Regulation_Of_Cellular_Amide_Metabolic_ProcessMouseBrainrep_35.2e-187
Csde1GOBP_Regulation_Of_Translational_InitiationMouseBrainrep_31.0e-196
Csde1GOBP_ReproductionMouseBrainrep_33.4e-125
Csde1GOBP_Reproductive_System_DevelopmentMouseBrainrep_31.3e-174
Csde1GOBP_Rna_Catabolic_ProcessMouseBrainrep_33.7e-202
Csde1GOBP_Sex_DifferentiationMouseBrainrep_36.9e-174
Csde1GOBP_Stress_Granule_AssemblyMouseBrainrep_37.9e-174
Csde1GOBP_Translational_InitiationMouseBrainrep_31.2e-197
Csde1GOBP_Viral_Gene_ExpressionMouseBrainrep_34.6e-154
Csde1GOBP_Viral_TranslationMouseBrainrep_35.6e-213
Csde1GOBP_Amide_Biosynthetic_ProcessMouseEmbryorep_14 3.7e-18
Csde1GOBP_Cellular_Amide_Metabolic_ProcessMouseEmbryorep_14 4.7e-16
Csde1GOBP_Development_Of_Primary_Sexual_CharacteristicsMouseEmbryorep_14 1.2e-09
Csde1GOBP_Ires_Dependent_Viral_Translational_InitiationMouseEmbryorep_14 1.0e-08
Csde1GOBP_Male_Sex_DifferentiationMouseEmbryorep_14 5.8e-13
Csde1GOBP_Nuclear_Transcribed_Mrna_Catabolic_ProcessMouseEmbryorep_14 3.5e-09
Csde1GOBP_Organonitrogen_Compound_Biosynthetic_ProcessMouseEmbryorep_14 2.4e-12
Csde1GOBP_Peptide_Biosynthetic_ProcessMouseEmbryorep_14 2.8e-15
Csde1GOBP_Peptide_Metabolic_ProcessMouseEmbryorep_14 4.7e-16
Csde1GOBP_Posttranscriptional_Regulation_Of_Gene_ExpressionMouseEmbryorep_14 1.4e-11
Csde1GOBP_Regulation_Of_Cellular_Amide_Metabolic_ProcessMouseEmbryorep_14 9.9e-25
Csde1GOBP_Regulation_Of_Translational_InitiationMouseEmbryorep_14 1.2e-21
Csde1GOBP_Reproductive_System_DevelopmentMouseEmbryorep_14 1.6e-09
Csde1GOBP_Sex_DifferentiationMouseEmbryorep_14 1.7e-14
Csde1GOBP_Translational_InitiationMouseEmbryorep_14 1.2e-37
Csde1GOBP_Viral_TranslationMouseEmbryorep_14 3.0e-16
Csde1GOBP_Development_Of_Primary_Sexual_CharacteristicsMouseEmbryorep_1 1.2e-66
Csde1GOBP_Mrna_Metabolic_ProcessMouseEmbryorep_1 5.8e-21
Csde1GOBP_Negative_Regulation_Of_Gene_ExpressionMouseEmbryorep_1 9.4e-07
Csde1GOBP_Sex_DifferentiationMouseEmbryorep_1 7.0e-66
Csde1GOBP_Biological_Process_Involved_In_Symbiotic_InteractionMouseEmbryorep_27.4e-121
Csde1GOBP_Organic_Cyclic_Compound_Catabolic_ProcessMouseEmbryorep_2 3.3e-45
Csde1GOBP_Rna_Catabolic_ProcessMouseEmbryorep_2 4.2e-77
Csde1GOBP_Viral_Gene_ExpressionMouseEmbryorep_2 3.8e-28
Csde1GOBP_Organelle_AssemblyMouseEmbryorep_6 4.1e-70
Csde1GOBP_Amide_Biosynthetic_ProcessMouseKidneyrep_2 1.9e-84
Csde1GOBP_Cellular_Amide_Metabolic_ProcessMouseKidneyrep_2 2.5e-85
Csde1GOBP_Development_Of_Primary_Sexual_CharacteristicsMouseKidneyrep_2 3.2e-15
Csde1GOBP_Developmental_Process_Involved_In_ReproductionMouseKidneyrep_2 3.6e-46
Csde1GOBP_Ires_Dependent_Viral_Translational_InitiationMouseKidneyrep_29.1e-121
Csde1GOBP_Macromolecule_Catabolic_ProcessMouseKidneyrep_2 7.0e-40
Csde1GOBP_Male_Sex_DifferentiationMouseKidneyrep_2 5.6e-14
Csde1GOBP_Mrna_Metabolic_ProcessMouseKidneyrep_2 3.1e-08
Csde1GOBP_Negative_Regulation_Of_Gene_ExpressionMouseKidneyrep_2 1.0e-19
Csde1GOBP_Nuclear_Transcribed_Mrna_Catabolic_ProcessMouseKidneyrep_2 9.3e-33
Csde1GOBP_Organelle_AssemblyMouseKidneyrep_2 2.8e-62
Csde1GOBP_Organonitrogen_Compound_Biosynthetic_ProcessMouseKidneyrep_2 8.9e-78
Csde1GOBP_Peptide_Biosynthetic_ProcessMouseKidneyrep_2 2.9e-85
Csde1GOBP_Peptide_Metabolic_ProcessMouseKidneyrep_2 1.4e-80
Csde1GOBP_Posttranscriptional_Regulation_Of_Gene_ExpressionMouseKidneyrep_2 1.1e-92
Csde1GOBP_Regulation_Of_Cellular_Amide_Metabolic_ProcessMouseKidneyrep_29.8e-137
Csde1GOBP_Regulation_Of_Translational_InitiationMouseKidneyrep_2 3.5e-71
Csde1GOBP_ReproductionMouseKidneyrep_2 9.0e-46
Csde1GOBP_Reproductive_System_DevelopmentMouseKidneyrep_2 6.4e-28
Csde1GOBP_Sex_DifferentiationMouseKidneyrep_2 4.6e-19
Csde1GOBP_Stress_Granule_AssemblyMouseKidneyrep_2 1.9e-77
Csde1GOBP_Translational_InitiationMouseKidneyrep_21.3e-103
Csde1GOBP_Viral_Gene_ExpressionMouseKidneyrep_2 7.6e-94
Csde1GOBP_Viral_TranslationMouseKidneyrep_25.5e-136
Csde1GOBP_Ires_Dependent_Viral_Translational_InitiationMouseLiverCN16-D2 2.3e-16
Csde1GOBP_Mrna_Metabolic_ProcessMouseLiverCN16-D2 5.2e-07
Csde1GOBP_Regulation_Of_Translational_InitiationMouseLiverCN16-D2 6.4e-08
Csde1GOBP_Development_Of_Primary_Sexual_CharacteristicsMouseLiverCN16-E1 4.8e-07
Csde1GOBP_Amide_Biosynthetic_ProcessMouseLymphMS-1 1.3e-09
Csde1GOBP_Biological_Process_Involved_In_Symbiotic_InteractionMouseLymphMS-1 4.6e-18
Csde1GOBP_Cellular_Amide_Metabolic_ProcessMouseLymphMS-1 5.8e-11
Csde1GOBP_Development_Of_Primary_Sexual_CharacteristicsMouseLymphMS-1 4.7e-12
Csde1GOBP_Developmental_Process_Involved_In_ReproductionMouseLymphMS-1 2.2e-10
Csde1GOBP_Macromolecule_Catabolic_ProcessMouseLymphMS-1 1.2e-13
Csde1GOBP_Male_Sex_DifferentiationMouseLymphMS-1 5.2e-09
Csde1GOBP_Mrna_Metabolic_ProcessMouseLymphMS-1 3.2e-11
Csde1GOBP_Negative_Regulation_Of_Gene_ExpressionMouseLymphMS-1 6.3e-11
Csde1GOBP_Nuclear_Transcribed_Mrna_Catabolic_ProcessMouseLymphMS-1 1.4e-09
Csde1GOBP_Organelle_AssemblyMouseLymphMS-1 5.5e-08
Csde1GOBP_Organic_Cyclic_Compound_Catabolic_ProcessMouseLymphMS-1 1.2e-13
Csde1GOBP_Organonitrogen_Compound_Biosynthetic_ProcessMouseLymphMS-1 1.4e-09
Csde1GOBP_Peptide_Biosynthetic_ProcessMouseLymphMS-1 7.1e-07
Csde1GOBP_Peptide_Metabolic_ProcessMouseLymphMS-1 5.8e-11
Csde1GOBP_Posttranscriptional_Regulation_Of_Gene_ExpressionMouseLymphMS-1 7.1e-09
Csde1GOBP_Regulation_Of_Cellular_Amide_Metabolic_ProcessMouseLymphMS-1 2.1e-08
Csde1GOBP_Regulation_Of_Translational_InitiationMouseLymphMS-1 3.5e-09
Csde1GOBP_ReproductionMouseLymphMS-1 1.1e-09
Csde1GOBP_Reproductive_System_DevelopmentMouseLymphMS-1 2.4e-11
Csde1GOBP_Rna_Catabolic_ProcessMouseLymphMS-1 8.7e-12
Csde1GOBP_Sex_DifferentiationMouseLymphMS-1 4.7e-12
Csde1GOBP_Stress_Granule_AssemblyMouseLymphMS-1 2.4e-10
Csde1GOBP_Translational_InitiationMouseLymphMS-1 7.5e-07
Csde1GOBP_Viral_Gene_ExpressionMouseLymphMS-1 1.4e-09
Csde1GOBP_Viral_TranslationMouseLymphMS-2 2.2e-08
Csde1GOBP_Macromolecule_Catabolic_ProcessMouseLungrep_1 2.0e-21
Csde1GOBP_Negative_Regulation_Of_Gene_ExpressionMouseLungrep_1 4.5e-23
Csde1GOBP_Posttranscriptional_Regulation_Of_Gene_ExpressionMouseLungrep_1 1.6e-15
Csde1GOBP_ReproductionMouseLungrep_1 9.6e-12
Csde1GOBP_Amide_Biosynthetic_ProcessMouseBrainHP_ad_rep7 8.0e-10
Csde1GOBP_Cellular_Amide_Metabolic_ProcessMouseBrainHP_ad_rep7 5.6e-11
Csde1GOBP_Developmental_Process_Involved_In_ReproductionMouseBrainHP_ad_rep7 2.5e-08
Csde1GOBP_Macromolecule_Catabolic_ProcessMouseBrainHP_ad_rep7 1.3e-09
Csde1GOBP_Male_Sex_DifferentiationMouseBrainHP_ad_rep7 5.6e-07
Csde1GOBP_Mrna_Metabolic_ProcessMouseBrainHP_ad_rep7 2.2e-09
Csde1GOBP_Negative_Regulation_Of_Gene_ExpressionMouseBrainHP_ad_rep7 2.1e-08
Csde1GOBP_Nuclear_Transcribed_Mrna_Catabolic_ProcessMouseBrainHP_ad_rep7 1.2e-08
Csde1GOBP_Organonitrogen_Compound_Biosynthetic_ProcessMouseBrainHP_ad_rep7 2.8e-08
Csde1GOBP_Peptide_Biosynthetic_ProcessMouseBrainHP_ad_rep7 4.4e-10
Csde1GOBP_Peptide_Metabolic_ProcessMouseBrainHP_ad_rep7 2.8e-10
Csde1GOBP_Posttranscriptional_Regulation_Of_Gene_ExpressionMouseBrainHP_ad_rep7 1.9e-10
Csde1GOBP_Regulation_Of_Cellular_Amide_Metabolic_ProcessMouseBrainHP_ad_rep7 5.9e-07
Csde1GOBP_Regulation_Of_Translational_InitiationMouseBrainHP_ad_rep7 3.8e-08
Csde1GOBP_ReproductionMouseBrainHP_ad_rep7 7.9e-09
Csde1GOBP_Rna_Catabolic_ProcessMouseBrainHP_ad_rep7 5.9e-09
Csde1GOBP_Sex_DifferentiationMouseBrainHP_ad_rep7 6.4e-09
Csde1GOBP_Stress_Granule_AssemblyMouseBrainHP_ad_rep7 6.7e-21
Csde1GOBP_Translational_InitiationMouseBrainHP_ad_rep7 6.9e-08
Csde1GOBP_Development_Of_Primary_Sexual_CharacteristicsMouseBrainHP_adpolb_rep1 7.3e-09
Csde1GOBP_Ires_Dependent_Viral_Translational_InitiationMouseBrainHP_adpolb_rep1 6.9e-13
Csde1GOBP_Organelle_AssemblyMouseBrainHP_adpolb_rep1 1.8e-07
Csde1GOBP_Viral_TranslationMouseBrainHP_adpolb_rep1 3.4e-15
Csde1GOBP_Biological_Process_Involved_In_Symbiotic_InteractionMouseBrainHP_polb_rep9 1.1e-12
Csde1GOBP_Organic_Cyclic_Compound_Catabolic_ProcessMouseBrainHP_polb_rep9 1.6e-08
Csde1GOBP_Reproductive_System_DevelopmentMouseBrainHP_polb_rep9 8.3e-10
Csde1GOBP_Viral_Gene_ExpressionMouseBrainHP_polb_rep9 1.1e-14

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Csde1 function as liang/receptor in single cell data

TissueSourceSourceCellTargetTargetCellPMIDGroup

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Csde1 function as liang/receptor across spatial transcriptomics tissue

check button Interactions using deconvoluted spatial data.

LigandReceptor LR pairTissueReplication

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Transcription factor for Csde1 envolved

check buttonTranscription factor analysis using single cell data.
TFTissueGroupCell typesTarget genesRss score

check button Motif information.

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Related Drugs for Csde1

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.9 2022-01-04)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for Csde1

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease namePubmedsSource
Csde1C0004352Autistic Disorder1GENOMICS_ENGLAND
Csde1C0557874Global developmental delay1GENOMICS_ENGLAND
Csde1C3714756Intellectual Disability1GENOMICS_ENGLAND