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	Gene summary
	Spatial pattern genes
	Spatial pattern pathway
	Cell cell interactions using single cell data
	Cell-cell/spot-spot interactions using spatial data
	Transcription factors events
	Related drugs with this gene
	Related diseases with this gene

Spatial pattern gene: Pcdh9 (spascer ID:211712)

Gene summary for Pcdh9

Gene summary

Gene information
	Species	Mouse
	Gene symbol	Pcdh9
	Gene ID	211712
	Gene name	protocadherin 9
	Synonyms	-
	Cytomap	14 E2.1\|14 45.8 cM
	Type of gene	protein-coding
	Description	protocadherin-9
	Modification date	20220514
	UniProtAcc

Gene ontology with evidence Inferred from Direct Assay (IDA) and Biological aspect of Ancestor (IBA).

Gene	GO ID	GO term	PubMed ID	Category
Pcdh9	GO:0005887	integral component of plasma membrane	21873635	Component
Pcdh9	GO:0007155	cell adhesion	21873635	Process

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Spatial pattern events for Pcdh9

spatial pattern gene list.

Gene symbol	Species	Tissue	Replication	PMID	Adj p-value
Pcdh9	Mouse	Brain	S1	34413515	2.07e-15
Pcdh9	Mouse	Brain	S2	34413515	1.56e-15
Pcdh9	Mouse	Brain	S3	34413515	2.01e-08
Pcdh9	Mouse	Brain	S4	34413515	1.37e-15
Pcdh9	Mouse	Brain	S6	34413515	1.46e-15
Pcdh9	Mouse	Brain	S7	34413515	1.55e-15
Pcdh9	Mouse	Brain	17B	32637622	1.95e-06
Pcdh9	Mouse	Brain	21A	32637622	1.69e-08
Pcdh9	Mouse	Brain	22A	32637622	5.37e-11
Pcdh9	Mouse	Brain	27A	32637622	8.83e-10
Pcdh9	Mouse	Brain	27B	32637622	1.27e-13
Pcdh9	Mouse	Brain	28A	32637622	6.40e-09
Pcdh9	Mouse	Brain	rep_1	35141374	4.69e-13
Pcdh9	Mouse	Brain	rep_2	35141374	3.05e-15
Pcdh9	Mouse	Brain	rep_3	35141374	3.00e-15
Pcdh9	Mouse	Brain	rep_4	35141374	2.84e-15
Pcdh9	Mouse	Brain	rep_5	35141374	1.47e-15
Pcdh9	Mouse	Brain	rep_6	35141374	3.15e-15
Pcdh9	Mouse	Embryo	1D	34210887	8.24e-10
Pcdh9	Mouse	Embryo	1E	34210887	3.31e-13
Pcdh9	Mouse	Embryo	1F	34210887	2.30e-14
Pcdh9	Mouse	Embryo	1G	34210887	6.15e-15
Pcdh9	Mouse	Embryo	2G	34210887	2.23e-10
Pcdh9	Mouse	Embryo	2H	34210887	1.06e-13
Pcdh9	Mouse	Embryo	3D	34210887	1.73e-13
Pcdh9	Mouse	Embryo	3F	34210887	5.82e-15
Pcdh9	Mouse	Embryo	3G	34210887	8.80e-15
Pcdh9	Mouse	Embryo	3H	34210887	2.22e-07
Pcdh9	Mouse	Embryo	4A	34210887	2.38e-14
Pcdh9	Mouse	Embryo	4C	34210887	1.12e-10
Pcdh9	Mouse	Embryo	4D	34210887	1.36e-14
Pcdh9	Mouse	Embryo	4E	34210887	4.53e-15
Pcdh9	Mouse	Embryo	rep_2	33188776	2.23e-09
Pcdh9	Mouse	Embryo	rep_5	33188776	1.24e-06
Pcdh9	Mouse	Brain	rep_1	33469025	1.30e-15
Pcdh9	Mouse	Brain	rep_1	35027729	1.66e-15
Pcdh9	Mouse	Brain	rep_2	35027729	1.57e-15
Pcdh9	Mouse	Brain	rep_3	35027729	1.32e-15
Pcdh9	Mouse	Brain	rep_4	35027729	1.76e-15
Pcdh9	Mouse	Brain	rep_5	35027729	1.46e-15
Pcdh9	Mouse	Brain	N02_D1	32702314	1.30e-08
Pcdh9	Mouse	Brain	N03_C2	32702314	1.13e-08
Pcdh9	Mouse	Brain	N03_D2	32702314	5.98e-07
Pcdh9	Mouse	Testicle	rep_6	34731600	1.42e-09
Pcdh9	Mouse	Brain	rep_2	35210624	1.93e-08
Pcdh9	Mouse	Brain	rep_3	35210624	6.25e-15
Pcdh9	Mouse	Brain	rep_4	35210624	5.17e-14
Pcdh9	Mouse	Brain	rep_5	35210624	3.62e-15
Pcdh9	Mouse	Brain	rep_6	35210624	1.64e-12
Pcdh9	Mouse	Brain	rep_7	35210624	8.98e-13

spatial pattern gene map.(click to enlarge the image in a new window)

H&E staining (if available)	Singel gene map
Brain_rep_1_H&E
Brain_rep_2_H&E
Brain_rep_3_H&E
Brain_rep_4_H&E
Brain_rep_5_H&E
Brain_rep_6_H&E
Brain_rep_1_H&E
Brain_rep_1_H&E
Brain_rep_2_H&E
Brain_rep_3_H&E
Brain_rep_4_H&E
Brain_rep_5_H&E
Brain_N02_D1_H&E
Brain_N03_C2_H&E
Brain_N03_D2_H&E

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Spatial pattern pathway has Pcdh9 envolved

Symbol	Pathway	Species	Tissue type	Replication	P-value
Pcdh9	GOBP_Cell_Cell_Adhesion_Via_Plasma_Membrane_Adhesion_Molecules	Mouse	Spinal cord	L7bCN02_E1	2.3e-06
Pcdh9	GOBP_Biological_Adhesion	Mouse	Spinal cord	L7CN45_C1	2.4e-08
Pcdh9	GOBP_Cell_Cell_Adhesion	Mouse	Spinal cord	L7CN45_C1	6.8e-10
Pcdh9	GOBP_Central_Nervous_System_Development	Mouse	Spinal cord	L7CN45_C1	5.5e-10
Pcdh9	GOBP_Forebrain_Development	Mouse	Spinal cord	L7CN45_C1	1.0e-08
Pcdh9	GOBP_Head_Development	Mouse	Spinal cord	L7CN45_C1	3.4e-09
Pcdh9	GOBP_Homophilic_Cell_Adhesion_Via_Plasma_Membrane_Adhesion_Molecules	Mouse	Spinal cord	L7CN45_C1	1.8e-06
Pcdh9	GOBP_Homophilic_Cell_Adhesion_Via_Plasma_Membrane_Adhesion_Molecules	Mouse	Brain	rep_27	1.1e-05
Pcdh9	GOBP_Central_Nervous_System_Development	Mouse	Brain	rep_1	8.6e-30
Pcdh9	GOBP_Forebrain_Development	Mouse	Brain	rep_1	7.3e-42
Pcdh9	GOBP_Head_Development	Mouse	Brain	rep_1	3.9e-29
Pcdh9	GOBP_Biological_Adhesion	Mouse	Brain	rep_3	4.3e-106
Pcdh9	GOBP_Cell_Cell_Adhesion	Mouse	Brain	rep_3	5.2e-118
Pcdh9	GOBP_Cell_Cell_Adhesion_Via_Plasma_Membrane_Adhesion_Molecules	Mouse	Brain	rep_3	3.5e-23
Pcdh9	GOBP_Homophilic_Cell_Adhesion_Via_Plasma_Membrane_Adhesion_Molecules	Mouse	Brain	rep_3	1.8e-39
Pcdh9	GOBP_Homophilic_Cell_Adhesion_Via_Plasma_Membrane_Adhesion_Molecules	Mouse	Embryo	rep_14	5.8e-12
Pcdh9	GOBP_Biological_Adhesion	Mouse	Embryo	rep_1	2.2e-19
Pcdh9	GOBP_Central_Nervous_System_Development	Mouse	Embryo	rep_1	3.0e-261
Pcdh9	GOBP_Head_Development	Mouse	Embryo	rep_1	1.8e-91
Pcdh9	GOBP_Central_Nervous_System_Development	Mouse	Kidney	Nep	4.2e-26
Pcdh9	GOBP_Biological_Adhesion	Mouse	Kidney	rep_2	1.3e-48
Pcdh9	GOBP_Cell_Cell_Adhesion	Mouse	Kidney	rep_2	1.1e-24
Pcdh9	GOBP_Central_Nervous_System_Development	Mouse	Kidney	rep_2	1.3e-23
Pcdh9	GOBP_Forebrain_Development	Mouse	Kidney	rep_2	7.6e-21
Pcdh9	GOBP_Head_Development	Mouse	Kidney	rep_2	1.9e-29
Pcdh9	GOBP_Homophilic_Cell_Adhesion_Via_Plasma_Membrane_Adhesion_Molecules	Mouse	Kidney	rep_2	1.6e-83
Pcdh9	GOBP_Biological_Adhesion	Mouse	Liver	rep_16	2.1e-07
Pcdh9	GOBP_Cell_Cell_Adhesion	Mouse	Liver	rep_16	1.4e-11
Pcdh9	GOBP_Central_Nervous_System_Development	Mouse	Liver	rep_16	8.2e-15
Pcdh9	GOBP_Head_Development	Mouse	Liver	rep_16	4.3e-18
Pcdh9	GOBP_Biological_Adhesion	Mouse	Lymph	MS-1	8.0e-14
Pcdh9	GOBP_Cell_Cell_Adhesion	Mouse	Lymph	MS-1	1.9e-13
Pcdh9	GOBP_Central_Nervous_System_Development	Mouse	Lymph	MS-1	3.8e-07
Pcdh9	GOBP_Forebrain_Development	Mouse	Lymph	MS-1	4.2e-09
Pcdh9	GOBP_Homophilic_Cell_Adhesion_Via_Plasma_Membrane_Adhesion_Molecules	Mouse	Lymph	MS-1	1.0e-10
Pcdh9	GOBP_Biological_Adhesion	Mouse	Lung	rep_1	3.0e-22
Pcdh9	GOBP_Cell_Cell_Adhesion	Mouse	Lung	rep_1	2.9e-07
Pcdh9	GOBP_Homophilic_Cell_Adhesion_Via_Plasma_Membrane_Adhesion_Molecules	Mouse	Brain	rep_4	8.5e-80
Pcdh9	GOBP_Central_Nervous_System_Development	Mouse	Brain	HP_ad_rep7	2.3e-07
Pcdh9	GOBP_Forebrain_Development	Mouse	Brain	HP_ad_rep7	5.5e-07
Pcdh9	GOBP_Head_Development	Mouse	Brain	HP_ad_rep7	3.0e-07
Pcdh9	GOBP_Homophilic_Cell_Adhesion_Via_Plasma_Membrane_Adhesion_Molecules	Mouse	Brain	HP_ad_rep7	6.4e-10
Pcdh9	GOBP_Biological_Adhesion	Mouse	Brain	HP_polb_rep9	1.5e-07
Pcdh9	GOBP_Cell_Cell_Adhesion	Mouse	Brain	HP_polb_rep9	3.6e-11
Pcdh9	GOBP_Cell_Cell_Adhesion_Via_Plasma_Membrane_Adhesion_Molecules	Mouse	Brain	HP_polb_rep9	1.0e-07

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Pcdh9 function as liang/receptor in single cell data

Tissue

Source

SourceCell

Target

TargetCell

PMID

Group

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Pcdh9 function as liang/receptor across spatial transcriptomics tissue

Interactions using deconvoluted spatial data.

Ligand

Receptor

LR pair

Tissue

Replication

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Transcription factor for Pcdh9 envolved

Transcription factor analysis using single cell data.

Tissue

Group

Cell types

Target genes

Rss score

Motif information.

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Related Drugs for Pcdh9

Approved drugs targeting this gene.
(DrugBank Version 5.1.9 2022-01-04)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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Related Diseases for Pcdh9

Diseases associated with this gene.
(DisGeNet 7.0)

Gene	Disease ID	Disease name	Pubmeds	Source
Pcdh9	C1510586	Autism Spectrum Disorders	1	CTD_human