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	Gene summary
	Spatial pattern genes
	Spatial pattern pathway
	Cell cell interactions using single cell data
	Cell-cell/spot-spot interactions using spatial data
	Transcription factors events
	Related drugs with this gene
	Related diseases with this gene

Spatial pattern gene: Sdc3 (spascer ID:20970)

Gene summary for Sdc3

Gene summary

Gene information
	Species	Mouse
	Gene symbol	Sdc3
	Gene ID	20970
	Gene name	syndecan 3
	Synonyms	Synd3\|mKIAA0468\|syn-3
	Cytomap	4 D2.2\|4 63.63 cM
	Type of gene	protein-coding
	Description	syndecan-3
	Modification date	20220424
	UniProtAcc	Q64519

Gene ontology with evidence Inferred from Direct Assay (IDA) and Biological aspect of Ancestor (IBA).

Gene	GO ID	GO term	PubMed ID	Category
Sdc3	GO:0009986	cell surface	21873635	Component
Sdc3	GO:0016477	cell migration	21873635	Process

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Spatial pattern events for Sdc3

spatial pattern gene list.

Gene symbol	Species	Tissue	Replication	PMID	Adj p-value
Sdc3	Mouse	Brain	S1	34413515	2.07e-15
Sdc3	Mouse	Brain	S2	34413515	1.56e-15
Sdc3	Mouse	Brain	S3	34413515	1.64e-15
Sdc3	Mouse	Brain	S4	34413515	1.37e-15
Sdc3	Mouse	Brain	S6	34413515	1.46e-15
Sdc3	Mouse	Brain	S7	34413515	1.55e-15
Sdc3	Mouse	Brain	rep_1	35141374	2.02e-15
Sdc3	Mouse	Brain	rep_2	35141374	1.69e-15
Sdc3	Mouse	Brain	rep_3	35141374	1.64e-15
Sdc3	Mouse	Brain	rep_4	35141374	1.57e-15
Sdc3	Mouse	Brain	rep_5	35141374	1.47e-15
Sdc3	Mouse	Brain	rep_6	35141374	1.73e-15
Sdc3	Mouse	Embryo	4E	34210887	2.85e-08
Sdc3	Mouse	Kidney	CLP	34003797	2.19e-15
Sdc3	Mouse	Kidney	IRI	34003797	5.97e-08
Sdc3	Mouse	Kidney	Sham	34003797	4.30e-15
Sdc3	Mouse	Kidney	rep_1	34853151	1.07e-12
Sdc3	Mouse	Kidney	rep_3	34853151	1.46e-06
Sdc3	Mouse	Kidney	rep_5	34853151	9.99e-09
Sdc3	Mouse	Brain	rep_1	33469025	1.30e-15
Sdc3	Mouse	Liver	rep_20	35021063	9.91e-15
Sdc3	Mouse	Liver	rep_22	35021063	1.07e-14
Sdc3	Mouse	Brain	rep_1	35027729	1.66e-15
Sdc3	Mouse	Brain	rep_2	35027729	1.57e-15
Sdc3	Mouse	Brain	rep_3	35027729	1.32e-15
Sdc3	Mouse	Brain	rep_4	35027729	1.76e-15
Sdc3	Mouse	Brain	rep_5	35027729	1.46e-15
Sdc3	Mouse	Intestine	rep_1	35149721	1.81e-14
Sdc3	Mouse	Intestine	rep_2	35149721	3.44e-15
Sdc3	Mouse	Intestine	rep_3	35149721	3.25e-15
Sdc3	Mouse	Intestine	rep_4	35149721	2.30e-15
Sdc3	Mouse	Brain	B02_D1	32702314	2.44e-11
Sdc3	Mouse	Brain	B02_E1	32702314	1.88e-10
Sdc3	Mouse	Brain	B03_D2	32702314	9.88e-07
Sdc3	Mouse	Brain	N03_D2	32702314	1.65e-06
Sdc3	Mouse	Brain	N04_E1	32702314	7.52e-08
Sdc3	Mouse	Testicle	rep_3	34731600	2.77e-09
Sdc3	Mouse	Lymph	MS-1	0	3.72e-14
Sdc3	Mouse	Lymph	MS-2	0	2.69e-14
Sdc3	Mouse	Lymph	A1	0	2.07e-10
Sdc3	Mouse	Lymph	B1	0	7.43e-14
Sdc3	Mouse	Lung	rep_1	35290801	6.56e-15
Sdc3	Mouse	Lung	rep_2	35290801	1.42e-14
Sdc3	Mouse	Lung	rep_3	35290801	1.52e-14
Sdc3	Mouse	Lung	rep_4	35290801	3.86e-10
Sdc3	Mouse	Brain	rep_1	35210624	1.74e-15
Sdc3	Mouse	Brain	rep_2	35210624	1.74e-15
Sdc3	Mouse	Brain	rep_3	35210624	1.82e-15
Sdc3	Mouse	Brain	rep_4	35210624	2.34e-15
Sdc3	Mouse	Brain	rep_5	35210624	2.07e-15
Sdc3	Mouse	Brain	rep_6	35210624	2.05e-15
Sdc3	Mouse	Brain	rep_7	35210624	1.87e-15

spatial pattern gene map.(click to enlarge the image in a new window)

H&E staining (if available)	Singel gene map
Brain_rep_1_H&E
Brain_rep_2_H&E
Brain_rep_3_H&E
Brain_rep_4_H&E
Brain_rep_5_H&E
Brain_rep_6_H&E
Kidney_CLP_H&E
Kidney_IRI_H&E
Kidney_Sham_H&E
Kidney_rep_1_H&E
Kidney_rep_3_H&E
Kidney_rep_5_H&E
Brain_rep_1_H&E
Liver_rep_20_H&E
Liver_rep_22_H&E
Brain_rep_1_H&E
Brain_rep_2_H&E
Brain_rep_3_H&E
Brain_rep_4_H&E
Brain_rep_5_H&E
Brain_B02_D1_H&E
Brain_B02_E1_H&E
Brain_B03_D2_H&E
Brain_N03_D2_H&E
Brain_N04_E1_H&E
Lung_rep_1_H&E
Lung_rep_2_H&E
Lung_rep_3_H&E
Lung_rep_4_H&E

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Spatial pattern pathway has Sdc3 envolved

Symbol	Pathway	Species	Tissue type	Replication	P-value
Sdc3	GOBP_Cellular_Lipid_Metabolic_Process	Mouse	Spinal cord	L7bCN02_E1	3.7e-06
Sdc3	GOBP_Lipid_Metabolic_Process	Mouse	Spinal cord	L7bCN02_E1	8.9e-07
Sdc3	GOBP_Aminoglycan_Catabolic_Process	Mouse	Spinal cord	L7CN45_C1	8.7e-07
Sdc3	GOBP_Carbohydrate_Derivative_Biosynthetic_Process	Mouse	Spinal cord	L7CN45_C1	1.6e-07
Sdc3	GOBP_Carbohydrate_Derivative_Catabolic_Process	Mouse	Spinal cord	L7CN45_C1	2.7e-07
Sdc3	GOBP_Carbohydrate_Derivative_Metabolic_Process	Mouse	Spinal cord	L7CN45_C1	1.8e-07
Sdc3	GOBP_Isoprenoid_Metabolic_Process	Mouse	Spinal cord	L7CN45_C1	5.2e-09
Sdc3	GOBP_Leukocyte_Migration	Mouse	Spinal cord	L7CN45_C1	4.2e-06
Sdc3	GOBP_Macromolecule_Catabolic_Process	Mouse	Spinal cord	L7CN45_C1	7.5e-06
Sdc3	GOBP_Organonitrogen_Compound_Biosynthetic_Process	Mouse	Spinal cord	L7CN45_C1	5.6e-08
Sdc3	GOBP_Organonitrogen_Compound_Catabolic_Process	Mouse	Spinal cord	L7CN45_C1	5.1e-08
Sdc3	GOBP_Terpenoid_Metabolic_Process	Mouse	Spinal cord	L7CN45_C1	3.6e-09
Sdc3	GOBP_Aminoglycan_Biosynthetic_Process	Mouse	Spinal cord	L7CN47_C1	1.3e-06
Sdc3	GOBP_Aminoglycan_Metabolic_Process	Mouse	Spinal cord	L7CN47_D1	4.0e-07
Sdc3	GOBP_Cell_Migration	Mouse	Spinal cord	L8CN11_D1	8.5e-06
Sdc3	GOBP_Locomotion	Mouse	Spinal cord	L8CN11_D1	8.5e-06
Sdc3	GOBP_Aminoglycan_Biosynthetic_Process	Mouse	Brain	rep_27	4.3e-05
Sdc3	GOBP_Aminoglycan_Catabolic_Process	Mouse	Brain	rep_27	5.0e-07
Sdc3	GOBP_Isoprenoid_Metabolic_Process	Mouse	Brain	rep_71	5.6e-05
Sdc3	GOBP_Aminoglycan_Biosynthetic_Process	Mouse	Brain	rep_1	2.1e-28
Sdc3	GOBP_Aminoglycan_Catabolic_Process	Mouse	Brain	rep_3	3.0e-90
Sdc3	GOBP_Aminoglycan_Metabolic_Process	Mouse	Brain	rep_3	3.9e-113
Sdc3	GOBP_Carbohydrate_Derivative_Biosynthetic_Process	Mouse	Brain	rep_3	2.7e-27
Sdc3	GOBP_Carbohydrate_Derivative_Catabolic_Process	Mouse	Brain	rep_3	3.4e-221
Sdc3	GOBP_Carbohydrate_Derivative_Metabolic_Process	Mouse	Brain	rep_3	4.5e-61
Sdc3	GOBP_Cell_Migration	Mouse	Brain	rep_3	4.9e-108
Sdc3	GOBP_Leukocyte_Migration	Mouse	Brain	rep_3	5.3e-139
Sdc3	GOBP_Locomotion	Mouse	Brain	rep_3	5.4e-74
Sdc3	GOBP_Macromolecule_Catabolic_Process	Mouse	Brain	rep_3	1.7e-159
Sdc3	GOBP_Organonitrogen_Compound_Biosynthetic_Process	Mouse	Brain	rep_3	2.9e-144
Sdc3	GOBP_Organonitrogen_Compound_Catabolic_Process	Mouse	Brain	rep_3	7.1e-166
Sdc3	GOBP_Aminoglycan_Catabolic_Process	Mouse	Embryo	rep_6	1.1e-09
Sdc3	GOBP_Aminoglycan_Biosynthetic_Process	Mouse	Embryo	rep_14	1.4e-44
Sdc3	GOBP_Aminoglycan_Metabolic_Process	Mouse	Embryo	rep_14	8.7e-35
Sdc3	GOBP_Carbohydrate_Derivative_Biosynthetic_Process	Mouse	Embryo	rep_14	4.5e-09
Sdc3	GOBP_Carbohydrate_Derivative_Catabolic_Process	Mouse	Embryo	rep_14	1.7e-43
Sdc3	GOBP_Isoprenoid_Metabolic_Process	Mouse	Embryo	rep_14	2.6e-24
Sdc3	GOBP_Leukocyte_Migration	Mouse	Embryo	rep_14	2.9e-16
Sdc3	GOBP_Organonitrogen_Compound_Biosynthetic_Process	Mouse	Embryo	rep_14	2.4e-12
Sdc3	GOBP_Terpenoid_Metabolic_Process	Mouse	Embryo	rep_14	1.1e-19
Sdc3	GOBP_Cell_Migration	Mouse	Embryo	rep_1	7.4e-36
Sdc3	GOBP_Lipid_Metabolic_Process	Mouse	Embryo	rep_1	2.1e-39
Sdc3	GOBP_Locomotion	Mouse	Embryo	rep_1	1.7e-10
Sdc3	GOBP_Organonitrogen_Compound_Catabolic_Process	Mouse	Embryo	rep_1	5.7e-21
Sdc3	GOBP_Cell_Migration	Mouse	Kidney	Nep	5.3e-07
Sdc3	GOBP_Lipid_Metabolic_Process	Mouse	Kidney	Nep	4.2e-26
Sdc3	GOBP_Locomotion	Mouse	Kidney	Nep	5.3e-07
Sdc3	GOBP_Aminoglycan_Catabolic_Process	Mouse	Kidney	rep_2	1.4e-63
Sdc3	GOBP_Carbohydrate_Derivative_Biosynthetic_Process	Mouse	Kidney	rep_2	1.3e-08
Sdc3	GOBP_Carbohydrate_Derivative_Catabolic_Process	Mouse	Kidney	rep_2	5.9e-48
Sdc3	GOBP_Carbohydrate_Derivative_Metabolic_Process	Mouse	Kidney	rep_2	2.5e-42
Sdc3	GOBP_Cell_Migration	Mouse	Kidney	rep_2	4.7e-40
Sdc3	GOBP_Cellular_Lipid_Metabolic_Process	Mouse	Kidney	rep_2	7.4e-43
Sdc3	GOBP_Isoprenoid_Metabolic_Process	Mouse	Kidney	rep_2	5.6e-68
Sdc3	GOBP_Leukocyte_Migration	Mouse	Kidney	rep_2	8.5e-09
Sdc3	GOBP_Lipid_Metabolic_Process	Mouse	Kidney	rep_2	1.4e-78
Sdc3	GOBP_Locomotion	Mouse	Kidney	rep_2	2.1e-43
Sdc3	GOBP_Macromolecule_Catabolic_Process	Mouse	Kidney	rep_2	7.0e-40
Sdc3	GOBP_Organonitrogen_Compound_Biosynthetic_Process	Mouse	Kidney	rep_2	8.9e-78
Sdc3	GOBP_Organonitrogen_Compound_Catabolic_Process	Mouse	Kidney	rep_2	1.2e-14
Sdc3	GOBP_Terpenoid_Metabolic_Process	Mouse	Kidney	rep_2	2.3e-61
Sdc3	GOBP_Aminoglycan_Metabolic_Process	Mouse	Liver	CN73-C1	9.1e-08
Sdc3	GOBP_Carbohydrate_Derivative_Biosynthetic_Process	Mouse	Liver	CN73-C1	3.2e-07
Sdc3	GOBP_Carbohydrate_Derivative_Metabolic_Process	Mouse	Liver	CN73-C1	5.1e-08
Sdc3	GOBP_Cellular_Lipid_Metabolic_Process	Mouse	Liver	CN73-C1	9.9e-09
Sdc3	GOBP_Aminoglycan_Catabolic_Process	Mouse	Liver	rep_15	5.6e-10
Sdc3	GOBP_Aminoglycan_Metabolic_Process	Mouse	Liver	rep_16	2.1e-07
Sdc3	GOBP_Carbohydrate_Derivative_Biosynthetic_Process	Mouse	Liver	rep_16	2.6e-08
Sdc3	GOBP_Cell_Migration	Mouse	Liver	rep_26	1.6e-10
Sdc3	GOBP_Locomotion	Mouse	Liver	rep_26	1.6e-10
Sdc3	GOBP_Isoprenoid_Metabolic_Process	Mouse	Intestine	rep_2	4.0e-48
Sdc3	GOBP_Terpenoid_Metabolic_Process	Mouse	Intestine	rep_2	9.3e-72
Sdc3	GOBP_Aminoglycan_Biosynthetic_Process	Mouse	Lymph	MS-1	3.1e-16
Sdc3	GOBP_Aminoglycan_Catabolic_Process	Mouse	Lymph	MS-1	7.5e-16
Sdc3	GOBP_Aminoglycan_Metabolic_Process	Mouse	Lymph	MS-1	2.1e-14
Sdc3	GOBP_Carbohydrate_Derivative_Catabolic_Process	Mouse	Lymph	MS-1	6.0e-17
Sdc3	GOBP_Carbohydrate_Derivative_Metabolic_Process	Mouse	Lymph	MS-1	2.8e-10
Sdc3	GOBP_Cell_Migration	Mouse	Lymph	MS-1	5.7e-13
Sdc3	GOBP_Cellular_Lipid_Metabolic_Process	Mouse	Lymph	MS-1	1.1e-14
Sdc3	GOBP_Isoprenoid_Metabolic_Process	Mouse	Lymph	MS-1	2.0e-11
Sdc3	GOBP_Leukocyte_Migration	Mouse	Lymph	MS-1	5.5e-13
Sdc3	GOBP_Lipid_Metabolic_Process	Mouse	Lymph	MS-1	9.7e-11
Sdc3	GOBP_Locomotion	Mouse	Lymph	MS-1	1.2e-12
Sdc3	GOBP_Macromolecule_Catabolic_Process	Mouse	Lymph	MS-1	1.2e-13
Sdc3	GOBP_Organonitrogen_Compound_Biosynthetic_Process	Mouse	Lymph	MS-1	1.4e-09
Sdc3	GOBP_Organonitrogen_Compound_Catabolic_Process	Mouse	Lymph	MS-1	1.2e-13
Sdc3	GOBP_Terpenoid_Metabolic_Process	Mouse	Lymph	MS-1	1.5e-09
Sdc3	GOBP_Macromolecule_Catabolic_Process	Mouse	Lung	rep_1	2.0e-21
Sdc3	GOBP_Aminoglycan_Biosynthetic_Process	Mouse	Brain	rep_4	1.4e-08
Sdc3	GOBP_Aminoglycan_Catabolic_Process	Mouse	Brain	HP_ad_rep3	3.8e-18
Sdc3	GOBP_Aminoglycan_Biosynthetic_Process	Mouse	Brain	HP_ad_rep7	7.9e-08
Sdc3	GOBP_Aminoglycan_Metabolic_Process	Mouse	Brain	HP_ad_rep7	1.6e-11
Sdc3	GOBP_Carbohydrate_Derivative_Biosynthetic_Process	Mouse	Brain	HP_ad_rep7	9.8e-07
Sdc3	GOBP_Cell_Migration	Mouse	Brain	HP_ad_rep7	2.2e-07
Sdc3	GOBP_Leukocyte_Migration	Mouse	Brain	HP_ad_rep7	4.3e-08
Sdc3	GOBP_Locomotion	Mouse	Brain	HP_ad_rep7	3.8e-07
Sdc3	GOBP_Macromolecule_Catabolic_Process	Mouse	Brain	HP_ad_rep7	1.3e-09
Sdc3	GOBP_Organonitrogen_Compound_Biosynthetic_Process	Mouse	Brain	HP_ad_rep7	2.8e-08
Sdc3	GOBP_Organonitrogen_Compound_Catabolic_Process	Mouse	Brain	HP_ad_rep7	3.3e-07
Sdc3	GOBP_Carbohydrate_Derivative_Catabolic_Process	Mouse	Brain	HP_polb_rep9	4.0e-16
Sdc3	GOBP_Carbohydrate_Derivative_Metabolic_Process	Mouse	Brain	HP_polb_rep9	5.2e-12
Sdc3	GOBP_Cellular_Lipid_Metabolic_Process	Mouse	Brain	HP_polb_rep9	2.9e-07
Sdc3	GOBP_Lipid_Metabolic_Process	Mouse	Brain	HP_polb_rep9	9.9e-11

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Sdc3 function as liang/receptor in single cell data

Tissue

Source

SourceCell

Target

TargetCell

PMID

Group

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Sdc3 function as liang/receptor across spatial transcriptomics tissue

Interactions using deconvoluted spatial data.

Ligand	Receptor	LR pair	Tissue	Replication
Nrtn	Sdc3	Nrtn_Sdc3	Brain	rep_2

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Transcription factor for Sdc3 envolved

Transcription factor analysis using single cell data.

Tissue

Group

Cell types

Target genes

Rss score

Motif information.

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Related Drugs for Sdc3

Approved drugs targeting this gene.
(DrugBank Version 5.1.9 2022-01-04)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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Related Diseases for Sdc3

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

Pubmeds

Source