| Symbol | Pathway | Species | Tissue type | Replication | P-value |
| Bhlhe40 | GOBP_Circadian_Regulation_Of_Gene_Expression | Mouse | Spinal cord | CN94_E1 | 4.9e-06 |
| Bhlhe40 | GOBP_Negative_Regulation_Of_Biosynthetic_Process | Mouse | Spinal cord | CN94_E1 | 1.6e-06 |
| Bhlhe40 | GOBP_Negative_Regulation_Of_Nucleobase_Containing_Compound_Metabolic_Process | Mouse | Spinal cord | CN94_E1 | 6.2e-07 |
| Bhlhe40 | GOBP_Negative_Regulation_Of_Transcription_By_Rna_Polymerase_Ii | Mouse | Spinal cord | CN94_E1 | 2.2e-06 |
| Bhlhe40 | GOBP_Regionalization | Mouse | Spinal cord | CN94_E1 | 7.3e-06 |
| Bhlhe40 | GOBP_Regulation_Of_Cell_Development | Mouse | Spinal cord | CN94_E1 | 1.2e-06 |
| Bhlhe40 | GOBP_Regulation_Of_Nervous_System_Development | Mouse | Spinal cord | CN94_E1 | 6.7e-06 |
| Bhlhe40 | GOBP_Regulation_Of_Neurogenesis | Mouse | Spinal cord | CN94_E1 | 4.5e-06 |
| Bhlhe40 | GOBP_Circadian_Rhythm | Mouse | Spinal cord | L7bCN02_E1 | 4.0e-06 |
| Bhlhe40 | GOBP_Negative_Regulation_Of_Molecular_Function | Mouse | Spinal cord | L7CN45_C1 | 1.1e-06 |
| Bhlhe40 | GOBP_Neurogenesis | Mouse | Spinal cord | L7CN45_C1 | 3.4e-09 |
| Bhlhe40 | GOBP_Pattern_Specification_Process | Mouse | Spinal cord | L7CN45_C1 | 2.2e-09 |
| Bhlhe40 | GOBP_Regulation_Of_Cell_Differentiation | Mouse | Spinal cord | L7CN45_C1 | 8.5e-07 |
| Bhlhe40 | GOBP_Regulation_Of_Multicellular_Organismal_Development | Mouse | Spinal cord | L7CN45_C1 | 4.0e-08 |
| Bhlhe40 | GOBP_Response_To_Radiation | Mouse | Spinal cord | L7CN45_C1 | 4.5e-07 |
| Bhlhe40 | GOBP_Rhythmic_Process | Mouse | Spinal cord | L7CN45_C1 | 1.9e-06 |
| Bhlhe40 | GOBP_Regulation_Of_Circadian_Rhythm | Mouse | Spinal cord | L7CN47_C1 | 1.2e-07 |
| Bhlhe40 | GOBP_Response_To_Light_Stimulus | Mouse | Spinal cord | L7CN47_C1 | 3.8e-06 |
| Bhlhe40 | GOBP_Photoperiodism | Mouse | Spinal cord | L7CN85_E2 | 2.2e-06 |
| Bhlhe40 | GOBP_Anterior_Posterior_Pattern_Specification | Mouse | Spinal cord | L8CN17_E1 | 2.7e-06 |
| Bhlhe40 | GOBP_Anterior_Posterior_Pattern_Specification | Mouse | Brain | rep_27 | 3.1e-05 |
| Bhlhe40 | GOBP_Negative_Regulation_Of_Biosynthetic_Process | Mouse | Brain | rep_27 | 7.2e-05 |
| Bhlhe40 | GOBP_Negative_Regulation_Of_Transcription_By_Rna_Polymerase_Ii | Mouse | Brain | rep_27 | 2.8e-05 |
| Bhlhe40 | GOBP_Pattern_Specification_Process | Mouse | Brain | rep_27 | 3.2e-09 |
| Bhlhe40 | GOBP_Regionalization | Mouse | Brain | rep_27 | 3.9e-08 |
| Bhlhe40 | GOBP_Regulation_Of_Circadian_Rhythm | Mouse | Brain | rep_27 | 5.5e-05 |
| Bhlhe40 | GOBP_Circadian_Regulation_Of_Gene_Expression | Mouse | Brain | rep_72 | 3.3e-05 |
| Bhlhe40 | GOBP_Circadian_Regulation_Of_Gene_Expression | Mouse | Brain | rep_1 | 3.1e-14 |
| Bhlhe40 | GOBP_Circadian_Rhythm | Mouse | Brain | rep_1 | 2.6e-25 |
| Bhlhe40 | GOBP_Entrainment_Of_Circadian_Clock | Mouse | Brain | rep_1 | 6.5e-19 |
| Bhlhe40 | GOBP_Negative_Regulation_Of_Molecular_Function | Mouse | Brain | rep_1 | 1.0e-08 |
| Bhlhe40 | GOBP_Neurogenesis | Mouse | Brain | rep_1 | 6.4e-19 |
| Bhlhe40 | GOBP_Photoperiodism | Mouse | Brain | rep_1 | 3.4e-12 |
| Bhlhe40 | GOBP_Regulation_Of_Cell_Development | Mouse | Brain | rep_1 | 5.8e-13 |
| Bhlhe40 | GOBP_Regulation_Of_Cell_Differentiation | Mouse | Brain | rep_1 | 2.3e-15 |
| Bhlhe40 | GOBP_Regulation_Of_Circadian_Rhythm | Mouse | Brain | rep_1 | 1.6e-27 |
| Bhlhe40 | GOBP_Regulation_Of_Neurogenesis | Mouse | Brain | rep_1 | 1.1e-12 |
| Bhlhe40 | GOBP_Response_To_Abiotic_Stimulus | Mouse | Brain | rep_1 | 6.0e-28 |
| Bhlhe40 | GOBP_Rhythmic_Process | Mouse | Brain | rep_1 | 4.6e-47 |
| Bhlhe40 | GOBP_Anterior_Posterior_Pattern_Specification | Mouse | Brain | rep_3 | 1.2e-140 |
| Bhlhe40 | GOBP_Negative_Regulation_Of_Biosynthetic_Process | Mouse | Brain | rep_3 | 1.4e-196 |
| Bhlhe40 | GOBP_Negative_Regulation_Of_Dna_Binding_Transcription_Factor_Activity | Mouse | Brain | rep_3 | 4.3e-75 |
| Bhlhe40 | GOBP_Negative_Regulation_Of_Nucleobase_Containing_Compound_Metabolic_Process | Mouse | Brain | rep_3 | 9.4e-206 |
| Bhlhe40 | GOBP_Negative_Regulation_Of_Transcription_By_Rna_Polymerase_Ii | Mouse | Brain | rep_3 | 7.5e-168 |
| Bhlhe40 | GOBP_Pattern_Specification_Process | Mouse | Brain | rep_3 | 1.6e-118 |
| Bhlhe40 | GOBP_Regionalization | Mouse | Brain | rep_3 | 1.3e-180 |
| Bhlhe40 | GOBP_Regulation_Of_Dna_Binding_Transcription_Factor_Activity | Mouse | Brain | rep_3 | 1.8e-138 |
| Bhlhe40 | GOBP_Regulation_Of_Multicellular_Organismal_Development | Mouse | Brain | rep_3 | 5.2e-95 |
| Bhlhe40 | GOBP_Regulation_Of_Nervous_System_Development | Mouse | Brain | rep_3 | 3.7e-35 |
| Bhlhe40 | GOBP_Response_To_Light_Stimulus | Mouse | Brain | rep_3 | 3.8e-27 |
| Bhlhe40 | GOBP_Response_To_Radiation | Mouse | Brain | rep_3 | 4.6e-08 |
| Bhlhe40 | GOBP_Anterior_Posterior_Pattern_Specification | Mouse | Embryo | rep_6 | 1.5e-09 |
| Bhlhe40 | GOBP_Negative_Regulation_Of_Dna_Binding_Transcription_Factor_Activity | Mouse | Embryo | rep_6 | 1.4e-07 |
| Bhlhe40 | GOBP_Circadian_Rhythm | Mouse | Embryo | rep_14 | 5.3e-08 |
| Bhlhe40 | GOBP_Entrainment_Of_Circadian_Clock | Mouse | Embryo | rep_14 | 6.4e-41 |
| Bhlhe40 | GOBP_Photoperiodism | Mouse | Embryo | rep_14 | 6.4e-64 |
| Bhlhe40 | GOBP_Regulation_Of_Circadian_Rhythm | Mouse | Embryo | rep_14 | 4.4e-17 |
| Bhlhe40 | GOBP_Neurogenesis | Mouse | Embryo | rep_1 | 8.2e-08 |
| Bhlhe40 | GOBP_Regulation_Of_Cell_Development | Mouse | Embryo | rep_1 | 3.5e-55 |
| Bhlhe40 | GOBP_Regulation_Of_Multicellular_Organismal_Development | Mouse | Embryo | rep_1 | 2.8e-203 |
| Bhlhe40 | GOBP_Regulation_Of_Neurogenesis | Mouse | Embryo | rep_1 | 2.3e-08 |
| Bhlhe40 | GOBP_Response_To_Light_Stimulus | Mouse | Embryo | rep_1 | 1.5e-185 |
| Bhlhe40 | GOBP_Response_To_Radiation | Mouse | Embryo | rep_1 | 0.0e+00 |
| Bhlhe40 | GOBP_Anterior_Posterior_Pattern_Specification | Mouse | Embryo | rep_2 | 8.6e-166 |
| Bhlhe40 | GOBP_Circadian_Rhythm | Mouse | Embryo | rep_2 | 5.3e-10 |
| Bhlhe40 | GOBP_Negative_Regulation_Of_Biosynthetic_Process | Mouse | Embryo | rep_2 | 8.0e-13 |
| Bhlhe40 | GOBP_Regionalization | Mouse | Embryo | rep_2 | 5.4e-84 |
| Bhlhe40 | GOBP_Regulation_Of_Circadian_Rhythm | Mouse | Embryo | rep_2 | 1.1e-224 |
| Bhlhe40 | GOBP_Regulation_Of_Nervous_System_Development | Mouse | Embryo | rep_2 | 3.0e-74 |
| Bhlhe40 | GOBP_Rhythmic_Process | Mouse | Embryo | rep_2 | 7.6e-139 |
| Bhlhe40 | GOBP_Negative_Regulation_Of_Nucleobase_Containing_Compound_Metabolic_Process | Mouse | Embryo | rep_3 | 1.5e-267 |
| Bhlhe40 | GOBP_Negative_Regulation_Of_Transcription_By_Rna_Polymerase_Ii | Mouse | Embryo | rep_3 | 0.0e+00 |
| Bhlhe40 | GOBP_Pattern_Specification_Process | Mouse | Embryo | rep_3 | 2.8e-168 |
| Bhlhe40 | GOBP_Regulation_Of_Cell_Differentiation | Mouse | Embryo | rep_3 | 6.3e-72 |
| Bhlhe40 | GOBP_Negative_Regulation_Of_Molecular_Function | Mouse | Kidney | Nep | 8.3e-23 |
| Bhlhe40 | GOBP_Neurogenesis | Mouse | Kidney | Nep | 4.6e-22 |
| Bhlhe40 | GOBP_Regulation_Of_Multicellular_Organismal_Development | Mouse | Kidney | Nep | 1.3e-32 |
| Bhlhe40 | GOBP_Anterior_Posterior_Pattern_Specification | Mouse | Kidney | rep_2 | 3.0e-23 |
| Bhlhe40 | GOBP_Circadian_Regulation_Of_Gene_Expression | Mouse | Kidney | rep_2 | 6.4e-21 |
| Bhlhe40 | GOBP_Circadian_Rhythm | Mouse | Kidney | rep_2 | 1.8e-75 |
| Bhlhe40 | GOBP_Entrainment_Of_Circadian_Clock | Mouse | Kidney | rep_2 | 2.4e-86 |
| Bhlhe40 | GOBP_Negative_Regulation_Of_Biosynthetic_Process | Mouse | Kidney | rep_2 | 7.3e-42 |
| Bhlhe40 | GOBP_Negative_Regulation_Of_Dna_Binding_Transcription_Factor_Activity | Mouse | Kidney | rep_2 | 3.3e-62 |
| Bhlhe40 | GOBP_Negative_Regulation_Of_Molecular_Function | Mouse | Kidney | rep_2 | 2.5e-99 |
| Bhlhe40 | GOBP_Negative_Regulation_Of_Nucleobase_Containing_Compound_Metabolic_Process | Mouse | Kidney | rep_2 | 7.7e-30 |
| Bhlhe40 | GOBP_Negative_Regulation_Of_Transcription_By_Rna_Polymerase_Ii | Mouse | Kidney | rep_2 | 2.2e-14 |
| Bhlhe40 | GOBP_Neurogenesis | Mouse | Kidney | rep_2 | 2.4e-78 |
| Bhlhe40 | GOBP_Pattern_Specification_Process | Mouse | Kidney | rep_2 | 2.3e-36 |
| Bhlhe40 | GOBP_Photoperiodism | Mouse | Kidney | rep_2 | 1.3e-53 |
| Bhlhe40 | GOBP_Regionalization | Mouse | Kidney | rep_2 | 2.1e-25 |
| Bhlhe40 | GOBP_Regulation_Of_Cell_Development | Mouse | Kidney | rep_2 | 5.3e-55 |
| Bhlhe40 | GOBP_Regulation_Of_Cell_Differentiation | Mouse | Kidney | rep_2 | 2.6e-14 |
| Bhlhe40 | GOBP_Regulation_Of_Circadian_Rhythm | Mouse | Kidney | rep_2 | 2.9e-35 |
| Bhlhe40 | GOBP_Regulation_Of_Dna_Binding_Transcription_Factor_Activity | Mouse | Kidney | rep_2 | 2.6e-30 |
| Bhlhe40 | GOBP_Regulation_Of_Multicellular_Organismal_Development | Mouse | Kidney | rep_2 | 8.2e-110 |
| Bhlhe40 | GOBP_Regulation_Of_Nervous_System_Development | Mouse | Kidney | rep_2 | 3.8e-54 |
| Bhlhe40 | GOBP_Regulation_Of_Neurogenesis | Mouse | Kidney | rep_2 | 6.9e-62 |
| Bhlhe40 | GOBP_Response_To_Light_Stimulus | Mouse | Kidney | rep_2 | 4.7e-16 |
| Bhlhe40 | GOBP_Rhythmic_Process | Mouse | Kidney | rep_2 | 4.7e-69 |
| Bhlhe40 | GOBP_Negative_Regulation_Of_Molecular_Function | Mouse | Liver | CN73-C1 | 9.9e-07 |
| Bhlhe40 | GOBP_Entrainment_Of_Circadian_Clock | Mouse | Liver | rep_15 | 6.6e-15 |
| Bhlhe40 | GOBP_Photoperiodism | Mouse | Liver | rep_15 | 5.7e-18 |
| Bhlhe40 | GOBP_Circadian_Regulation_Of_Gene_Expression | Mouse | Liver | rep_16 | 7.9e-10 |
| Bhlhe40 | GOBP_Circadian_Rhythm | Mouse | Liver | rep_16 | 4.6e-09 |
| Bhlhe40 | GOBP_Pattern_Specification_Process | Mouse | Liver | rep_16 | 3.6e-20 |
| Bhlhe40 | GOBP_Regionalization | Mouse | Liver | rep_16 | 1.2e-11 |
| Bhlhe40 | GOBP_Regulation_Of_Cell_Differentiation | Mouse | Liver | rep_16 | 3.6e-08 |
| Bhlhe40 | GOBP_Entrainment_Of_Circadian_Clock | Mouse | Lymph | MS-1 | 9.9e-08 |
| Bhlhe40 | GOBP_Negative_Regulation_Of_Biosynthetic_Process | Mouse | Lymph | MS-1 | 6.1e-11 |
| Bhlhe40 | GOBP_Negative_Regulation_Of_Dna_Binding_Transcription_Factor_Activity | Mouse | Lymph | MS-1 | 3.0e-08 |
| Bhlhe40 | GOBP_Negative_Regulation_Of_Molecular_Function | Mouse | Lymph | MS-1 | 6.9e-11 |
| Bhlhe40 | GOBP_Negative_Regulation_Of_Nucleobase_Containing_Compound_Metabolic_Process | Mouse | Lymph | MS-1 | 1.8e-10 |
| Bhlhe40 | GOBP_Negative_Regulation_Of_Transcription_By_Rna_Polymerase_Ii | Mouse | Lymph | MS-1 | 2.2e-09 |
| Bhlhe40 | GOBP_Neurogenesis | Mouse | Lymph | MS-1 | 4.1e-08 |
| Bhlhe40 | GOBP_Pattern_Specification_Process | Mouse | Lymph | MS-1 | 3.9e-12 |
| Bhlhe40 | GOBP_Photoperiodism | Mouse | Lymph | MS-1 | 1.0e-09 |
| Bhlhe40 | GOBP_Regionalization | Mouse | Lymph | MS-1 | 2.7e-12 |
| Bhlhe40 | GOBP_Regulation_Of_Cell_Development | Mouse | Lymph | MS-1 | 2.7e-13 |
| Bhlhe40 | GOBP_Regulation_Of_Cell_Differentiation | Mouse | Lymph | MS-1 | 1.3e-14 |
| Bhlhe40 | GOBP_Regulation_Of_Dna_Binding_Transcription_Factor_Activity | Mouse | Lymph | MS-1 | 8.0e-12 |
| Bhlhe40 | GOBP_Regulation_Of_Multicellular_Organismal_Development | Mouse | Lymph | MS-1 | 7.2e-15 |
| Bhlhe40 | GOBP_Regulation_Of_Nervous_System_Development | Mouse | Lymph | MS-1 | 4.3e-11 |
| Bhlhe40 | GOBP_Regulation_Of_Neurogenesis | Mouse | Lymph | MS-1 | 4.3e-11 |
| Bhlhe40 | GOBP_Response_To_Abiotic_Stimulus | Mouse | Lymph | MS-1 | 1.5e-07 |
| Bhlhe40 | GOBP_Response_To_Light_Stimulus | Mouse | Lymph | MS-1 | 3.8e-09 |
| Bhlhe40 | GOBP_Response_To_Radiation | Mouse | Lymph | MS-1 | 9.1e-12 |
| Bhlhe40 | GOBP_Negative_Regulation_Of_Biosynthetic_Process | Mouse | Lung | rep_1 | 7.5e-20 |
| Bhlhe40 | GOBP_Negative_Regulation_Of_Molecular_Function | Mouse | Lung | rep_1 | 9.4e-15 |
| Bhlhe40 | GOBP_Negative_Regulation_Of_Nucleobase_Containing_Compound_Metabolic_Process | Mouse | Lung | rep_1 | 5.8e-10 |
| Bhlhe40 | GOBP_Circadian_Rhythm | Mouse | Brain | rep_4 | 2.1e-77 |
| Bhlhe40 | GOBP_Regionalization | Mouse | Brain | rep_4 | 6.3e-07 |
| Bhlhe40 | GOBP_Regulation_Of_Circadian_Rhythm | Mouse | Brain | rep_4 | 6.3e-75 |
| Bhlhe40 | GOBP_Rhythmic_Process | Mouse | Brain | rep_4 | 3.3e-35 |
| Bhlhe40 | GOBP_Pattern_Specification_Process | Mouse | Brain | rep_7 | 1.0e-12 |
| Bhlhe40 | GOBP_Circadian_Regulation_Of_Gene_Expression | Mouse | Brain | HP_ad_rep7 | 1.2e-07 |
| Bhlhe40 | GOBP_Circadian_Rhythm | Mouse | Brain | HP_ad_rep7 | 4.9e-12 |
| Bhlhe40 | GOBP_Entrainment_Of_Circadian_Clock | Mouse | Brain | HP_ad_rep7 | 4.4e-07 |
| Bhlhe40 | GOBP_Negative_Regulation_Of_Biosynthetic_Process | Mouse | Brain | HP_ad_rep7 | 3.3e-12 |
| Bhlhe40 | GOBP_Negative_Regulation_Of_Molecular_Function | Mouse | Brain | HP_ad_rep7 | 3.4e-10 |
| Bhlhe40 | GOBP_Negative_Regulation_Of_Nucleobase_Containing_Compound_Metabolic_Process | Mouse | Brain | HP_ad_rep7 | 5.9e-11 |
| Bhlhe40 | GOBP_Negative_Regulation_Of_Transcription_By_Rna_Polymerase_Ii | Mouse | Brain | HP_ad_rep7 | 7.1e-13 |
| Bhlhe40 | GOBP_Neurogenesis | Mouse | Brain | HP_ad_rep7 | 3.9e-07 |
| Bhlhe40 | GOBP_Pattern_Specification_Process | Mouse | Brain | HP_ad_rep7 | 2.1e-10 |
| Bhlhe40 | GOBP_Photoperiodism | Mouse | Brain | HP_ad_rep7 | 4.1e-08 |
| Bhlhe40 | GOBP_Regionalization | Mouse | Brain | HP_ad_rep7 | 2.8e-09 |
| Bhlhe40 | GOBP_Regulation_Of_Cell_Development | Mouse | Brain | HP_ad_rep7 | 3.8e-09 |
| Bhlhe40 | GOBP_Regulation_Of_Multicellular_Organismal_Development | Mouse | Brain | HP_ad_rep7 | 1.1e-08 |
| Bhlhe40 | GOBP_Regulation_Of_Nervous_System_Development | Mouse | Brain | HP_ad_rep7 | 1.1e-07 |
| Bhlhe40 | GOBP_Regulation_Of_Neurogenesis | Mouse | Brain | HP_ad_rep7 | 1.1e-08 |
| Bhlhe40 | GOBP_Response_To_Abiotic_Stimulus | Mouse | Brain | HP_ad_rep7 | 4.3e-08 |
| Bhlhe40 | GOBP_Response_To_Light_Stimulus | Mouse | Brain | HP_ad_rep7 | 1.6e-09 |
| Bhlhe40 | GOBP_Response_To_Radiation | Mouse | Brain | HP_ad_rep7 | 9.1e-09 |
| Bhlhe40 | GOBP_Rhythmic_Process | Mouse | Brain | HP_ad_rep7 | 4.3e-13 |
| Bhlhe40 | GOBP_Anterior_Posterior_Pattern_Specification | Mouse | Brain | HP_adpolb_rep1 | 3.0e-08 |
| Bhlhe40 | GOBP_Negative_Regulation_Of_Dna_Binding_Transcription_Factor_Activity | Mouse | Brain | HP_polb_rep9 | 2.1e-11 |
| Bhlhe40 | GOBP_Regulation_Of_Cell_Differentiation | Mouse | Brain | HP_polb_rep9 | 6.5e-09 |
| Bhlhe40 | GOBP_Regulation_Of_Circadian_Rhythm | Mouse | Brain | HP_polb_rep9 | 1.8e-10 |
| Bhlhe40 | GOBP_Regulation_Of_Dna_Binding_Transcription_Factor_Activity | Mouse | Brain | HP_polb_rep9 | 7.0e-08 |