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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

Spatial pattern genes

Soverview

Spatial pattern pathway

Soverview

Cell cell interactions using single cell data

Soverview

Cell-cell/spot-spot interactions using spatial data

Soverview

Transcription factors events

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Spatial pattern gene: Pbx3 (spascer ID:18516)

Gene summary for Pbx3

check button Gene summary
Gene information
SpeciesMouse
Gene symbol

Pbx3

Gene ID

18516

Gene namepre B cell leukemia homeobox 3
Synonyms-
Cytomap2 B|2 22.84 cM
Type of geneprotein-coding
Descriptionpre-B-cell leukemia transcription factor 3homeobox protein PBX3
Modification date20220424
UniProtAcc

O35317


check button Gene ontology with evidence Inferred from Direct Assay (IDA) and Biological aspect of Ancestor (IBA).
GeneGO IDGO termPubMed IDCategory
Pbx3

GO:0000978

RNA polymerase II cis-regulatory region sequence-specific DNA binding

21873635

Function
Pbx3

GO:0000981

DNA-binding transcription factor activity, RNA polymerase II-specific

21873635

Function
Pbx3

GO:0001654

eye development

21873635

Process
Pbx3

GO:0006357

regulation of transcription by RNA polymerase II

21873635

Process
Pbx3

GO:0007420

brain development

21873635

Process
Pbx3

GO:0009887

animal organ morphogenesis

21873635

Process
Pbx3

GO:0048568

embryonic organ development

21873635

Process
Pbx3

GO:0048666

neuron development

21873635

Process

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Spatial pattern events for Pbx3

check buttonspatial pattern gene list.
Gene symbolSpeciesTissueReplicationPMIDAdj p-value
Pbx3MouseBrainS1 344135152.07e-15
Pbx3MouseBrainS2 344135151.56e-15
Pbx3MouseBrainS3 344135151.64e-15
Pbx3MouseBrainS4 344135151.37e-15
Pbx3MouseBrainS6 344135151.46e-15
Pbx3MouseBrainS7 344135151.55e-15
Pbx3MouseBrain01A 326376222.14e-10
Pbx3MouseBrain01B 326376229.29e-14
Pbx3MouseBrain04A 326376229.48e-06
Pbx3MouseBrain04B 326376226.54e-09
Pbx3MouseBrain05A 326376224.78e-14
Pbx3MouseBrain05B 326376224.48e-14
Pbx3MouseBrain06A 326376222.13e-08
Pbx3MouseBrain06B 326376221.68e-14
Pbx3MouseBrain07A 326376223.98e-11
Pbx3MouseBrain07B 326376221.82e-14
Pbx3MouseBrain08A 326376221.03e-11
Pbx3MouseBrain08B 326376225.71e-14
Pbx3MouseBrain09A 326376229.89e-11
Pbx3MouseBrain09B 326376221.34e-12
Pbx3MouseBrain10B 326376222.29e-08
Pbx3MouseBrain12A 326376226.35e-06
Pbx3MouseBrain12B 326376229.11e-09
Pbx3MouseBrain13B 326376221.07e-06
Pbx3MouseBrain14A 326376224.32e-08
Pbx3MouseBrain14B 326376221.35e-14
Pbx3MouseBrain15A 326376224.86e-11
Pbx3MouseBrain17B 326376229.61e-06
Pbx3MouseBrain19A 326376224.00e-11
Pbx3MouseBrain19B 326376227.19e-06
Pbx3MouseBrain26A 326376222.20e-14
Pbx3MouseBrain26B 326376223.61e-10
Pbx3MouseBrain27A 326376221.03e-14
Pbx3MouseBrain27B 326376221.06e-14
Pbx3MouseBrain28A 326376221.06e-14
Pbx3MouseBrain28B 326376222.54e-13
Pbx3MouseBrain29A 326376221.08e-14
Pbx3MouseBrain29B 326376221.08e-14
Pbx3MouseBrain30A 326376225.45e-13
Pbx3MouseBrain31A 326376222.04e-10
Pbx3MouseBrain32A 326376226.90e-13
Pbx3MouseBrain33A 326376221.50e-14
Pbx3MouseBrain33B 326376222.38e-10
Pbx3MouseBrain34A 326376224.09e-07
Pbx3MouseBrain34B 326376228.35e-07
Pbx3MouseBrain35A 326376226.31e-08
Pbx3MouseBrainrep_1 351413742.02e-15
Pbx3MouseBrainrep_2 351413741.69e-15
Pbx3MouseBrainrep_3 351413741.64e-15
Pbx3MouseBrainrep_4 351413741.57e-15
Pbx3MouseBrainrep_5 351413741.47e-15
Pbx3MouseBrainrep_6 351413741.73e-15
Pbx3MouseEmbryo1G 342108871.44e-07
Pbx3MouseEmbryo3D 342108872.57e-09
Pbx3MouseEmbryo3F 342108874.26e-11
Pbx3MouseEmbryo3G 342108873.82e-10
Pbx3MouseEmbryo4D 342108873.20e-11
Pbx3MouseEmbryo4E 342108874.53e-15
Pbx3MouseEmbryorep_2 331887761.97e-14
Pbx3MouseEmbryorep_3 331887761.81e-14
Pbx3MouseEmbryorep_4 331887761.53e-14
Pbx3MouseEmbryorep_5 331887761.49e-06
Pbx3MouseEmbryorep_7 331887764.39e-13
Pbx3MouseEmbryorep_13 331887767.90e-15
Pbx3MouseKidneySham 340037978.32e-12
Pbx3MouseBrainrep_1 334690251.30e-15
Pbx3MouseBrainrep_1 350277291.66e-15
Pbx3MouseBrainrep_2 350277291.57e-15
Pbx3MouseBrainrep_3 350277291.32e-15
Pbx3MouseBrainrep_4 350277291.76e-15
Pbx3MouseBrainrep_5 350277291.46e-15
Pbx3MouseIntestinerep_2 351497211.00e-14
Pbx3MouseBrainB02_E1 327023141.67e-09
Pbx3MouseBrainB03_D2 327023141.46e-09
Pbx3MouseBrainN03_D2 327023141.38e-14
Pbx3MouseBrainN04_D1 327023144.62e-07
Pbx3MouseLungrep_2 352908017.28e-07
Pbx3MouseBrainOFB_ad_rep1 330837251.83e-03
Pbx3MouseBrainOFB_ad_rep2 330837253.99e-03
Pbx3MouseBrainOFB_ad_rep3 330837259.18e-08
Pbx3MouseBrainOFB_ad_rep4 330837252.14e-11
Pbx3MouseBrainOFB_adpolb_rep1 330837253.10e-05
Pbx3MouseBrainOFB_adpolb_rep2 330837251.25e-12
Pbx3MouseBrainOFB_adpolb_rep3 330837254.53e-09
Pbx3MouseBrainOFB_adpolb_rep4 330837254.74e-13
Pbx3MouseBrainOFB_adpolb_rep5 330837251.06e-02
Pbx3MouseBrainOFB_adpolb_rep6 330837252.27e-03
Pbx3MouseBrainOFB_polb_rep5 330837252.19e-04
Pbx3MouseBrainOFB_polb_rep7 330837251.26e-06
Pbx3MouseBrainOFB_polb_rep8 330837257.19e-05
Pbx3MouseBrainOFB_wt_rep1 330837254.24e-06
Pbx3MouseBrainOFB_wt_rep2 330837254.85e-04
Pbx3MouseBrainOFB_wt_rep3 330837253.84e-04
Pbx3MouseBrainOFB_wt_rep4 330837251.56e-02
Pbx3MouseBrainOFB_wt_rep5 330837258.35e-04

check buttonspatial pattern gene map.(click to enlarge the image in a new window)

H&E staining (if available)Singel gene map
Brain_rep_1_H&E
boxplot

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Brain_rep_2_H&E
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Brain_rep_3_H&E
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Brain_rep_4_H&E
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boxplot
Brain_rep_5_H&E
boxplot

boxplot
Brain_rep_6_H&E
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boxplot
Kidney_Sham_H&E
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boxplot
Brain_rep_1_H&E
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Brain_rep_1_H&E
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Brain_rep_2_H&E
boxplot

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Brain_rep_3_H&E
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Brain_rep_4_H&E
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boxplot
Brain_rep_5_H&E
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boxplot
Brain_B02_E1_H&E
boxplot

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Brain_B03_D2_H&E
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boxplot
Brain_N03_D2_H&E
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boxplot
Brain_N04_D1_H&E
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boxplot
Lung_rep_2_H&E
boxplot

boxplot
Brain_OFB_ad_rep1_H&E
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Brain_OFB_ad_rep2_H&E
boxplot
Brain_OFB_ad_rep3_H&E
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Brain_OFB_ad_rep4_H&E
boxplot
Brain_OFB_adpolb_rep1_H&E
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Brain_OFB_adpolb_rep2_H&E
boxplot
Brain_OFB_adpolb_rep3_H&E
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Brain_OFB_adpolb_rep4_H&E
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Brain_OFB_adpolb_rep5_H&E
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Brain_OFB_adpolb_rep6_H&E
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Brain_OFB_polb_rep5_H&E
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Brain_OFB_polb_rep7_H&E
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Brain_OFB_polb_rep8_H&E
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Brain_OFB_wt_rep1_H&E
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Brain_OFB_wt_rep2_H&E
boxplot
Brain_OFB_wt_rep3_H&E
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Brain_OFB_wt_rep4_H&E
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Brain_OFB_wt_rep5_H&E
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Spatial pattern pathway has Pbx3 envolved


SymbolPathwaySpeciesTissue typeReplicationP-value
Pbx3GOBP_Animal_Organ_MorphogenesisMouseSpinal cordCN94_E1 6.6e-06
Pbx3GOBP_RegionalizationMouseSpinal cordCN94_E1 7.3e-06
Pbx3GOBP_Sensory_Organ_DevelopmentMouseSpinal cordCN94_E1 4.5e-06
Pbx3GOBP_Central_Nervous_System_DevelopmentMouseSpinal cordL7CN45_C1 5.5e-10
Pbx3GOBP_Embryo_DevelopmentMouseSpinal cordL7CN45_C1 3.4e-09
Pbx3GOBP_Embryonic_Organ_DevelopmentMouseSpinal cordL7CN45_C1 5.1e-08
Pbx3GOBP_Head_DevelopmentMouseSpinal cordL7CN45_C1 3.4e-09
Pbx3GOBP_NeurogenesisMouseSpinal cordL7CN45_C1 3.4e-09
Pbx3GOBP_Neuron_DevelopmentMouseSpinal cordL7CN45_C1 5.6e-08
Pbx3GOBP_Neuron_DifferentiationMouseSpinal cordL7CN45_C1 3.4e-09
Pbx3GOBP_Pattern_Specification_ProcessMouseSpinal cordL7CN45_C1 2.2e-09
Pbx3GOBP_Sensory_System_DevelopmentMouseSpinal cordL7CN45_C1 3.4e-08
Pbx3GOBP_Anterior_Posterior_Pattern_SpecificationMouseSpinal cordL8CN17_E1 2.7e-06
Pbx3GOBP_Animal_Organ_MorphogenesisMouseBrainrep_27 2.0e-06
Pbx3GOBP_Anterior_Posterior_Pattern_SpecificationMouseBrainrep_27 3.1e-05
Pbx3GOBP_Pattern_Specification_ProcessMouseBrainrep_27 3.2e-09
Pbx3GOBP_RegionalizationMouseBrainrep_27 3.9e-08
Pbx3GOBP_Sensory_Organ_DevelopmentMouseBrainrep_27 4.9e-05
Pbx3GOBP_Sensory_System_DevelopmentMouseBrainrep_27 1.2e-05
Pbx3GOBP_Central_Nervous_System_DevelopmentMouseBrainrep_1 8.6e-30
Pbx3GOBP_Head_DevelopmentMouseBrainrep_1 3.9e-29
Pbx3GOBP_NeurogenesisMouseBrainrep_1 6.4e-19
Pbx3GOBP_Neuron_DevelopmentMouseBrainrep_1 3.8e-29
Pbx3GOBP_Neuron_DifferentiationMouseBrainrep_1 8.7e-25
Pbx3GOBP_Sensory_System_DevelopmentMouseBrainrep_1 1.6e-12
Pbx3GOBP_Animal_Organ_MorphogenesisMouseBrainrep_3 5.4e-57
Pbx3GOBP_Anterior_Posterior_Pattern_SpecificationMouseBrainrep_31.2e-140
Pbx3GOBP_Embryo_DevelopmentMouseBrainrep_31.3e-126
Pbx3GOBP_Embryonic_Organ_DevelopmentMouseBrainrep_34.3e-190
Pbx3GOBP_Pattern_Specification_ProcessMouseBrainrep_31.6e-118
Pbx3GOBP_RegionalizationMouseBrainrep_31.3e-180
Pbx3GOBP_Sensory_Organ_DevelopmentMouseBrainrep_31.6e-123
Pbx3GOBP_Anterior_Posterior_Pattern_SpecificationMouseEmbryorep_6 1.5e-09
Pbx3GOBP_Animal_Organ_MorphogenesisMouseEmbryorep_1 1.7e-10
Pbx3GOBP_Central_Nervous_System_DevelopmentMouseEmbryorep_13.0e-261
Pbx3GOBP_Head_DevelopmentMouseEmbryorep_1 1.8e-91
Pbx3GOBP_NeurogenesisMouseEmbryorep_1 8.2e-08
Pbx3GOBP_Sensory_System_DevelopmentMouseEmbryorep_1 1.3e-72
Pbx3GOBP_Anterior_Posterior_Pattern_SpecificationMouseEmbryorep_28.6e-166
Pbx3GOBP_Neuron_DevelopmentMouseEmbryorep_2 4.8e-18
Pbx3GOBP_RegionalizationMouseEmbryorep_2 5.4e-84
Pbx3GOBP_Embryo_DevelopmentMouseEmbryorep_31.2e-173
Pbx3GOBP_Neuron_DifferentiationMouseEmbryorep_32.1e-193
Pbx3GOBP_Pattern_Specification_ProcessMouseEmbryorep_32.8e-168
Pbx3GOBP_Sensory_Organ_DevelopmentMouseEmbryorep_32.1e-266
Pbx3GOBP_Central_Nervous_System_DevelopmentMouseKidneyNep 4.2e-26
Pbx3GOBP_NeurogenesisMouseKidneyNep 4.6e-22
Pbx3GOBP_Neuron_DevelopmentMouseKidneyNep 8.3e-23
Pbx3GOBP_Neuron_DifferentiationMouseKidneyNep 8.3e-23
Pbx3GOBP_Animal_Organ_MorphogenesisMouseKidneyrep_2 4.2e-71
Pbx3GOBP_Anterior_Posterior_Pattern_SpecificationMouseKidneyrep_2 3.0e-23
Pbx3GOBP_Central_Nervous_System_DevelopmentMouseKidneyrep_2 1.3e-23
Pbx3GOBP_Embryo_DevelopmentMouseKidneyrep_2 7.4e-46
Pbx3GOBP_Embryonic_Organ_DevelopmentMouseKidneyrep_2 1.3e-60
Pbx3GOBP_Head_DevelopmentMouseKidneyrep_2 1.9e-29
Pbx3GOBP_NeurogenesisMouseKidneyrep_2 2.4e-78
Pbx3GOBP_Neuron_DevelopmentMouseKidneyrep_2 1.3e-42
Pbx3GOBP_Neuron_DifferentiationMouseKidneyrep_2 3.9e-32
Pbx3GOBP_Pattern_Specification_ProcessMouseKidneyrep_2 2.3e-36
Pbx3GOBP_RegionalizationMouseKidneyrep_2 2.1e-25
Pbx3GOBP_Sensory_Organ_DevelopmentMouseKidneyrep_2 4.7e-27
Pbx3GOBP_Sensory_System_DevelopmentMouseKidneyrep_2 7.2e-08
Pbx3GOBP_Neuron_DifferentiationMouseLiverCN16-D2 5.1e-07
Pbx3GOBP_Central_Nervous_System_DevelopmentMouseLiverrep_16 8.2e-15
Pbx3GOBP_Head_DevelopmentMouseLiverrep_16 4.3e-18
Pbx3GOBP_Pattern_Specification_ProcessMouseLiverrep_16 3.6e-20
Pbx3GOBP_RegionalizationMouseLiverrep_16 1.2e-11
Pbx3GOBP_Animal_Organ_MorphogenesisMouseLymphMS-1 4.4e-09
Pbx3GOBP_Central_Nervous_System_DevelopmentMouseLymphMS-1 3.8e-07
Pbx3GOBP_Embryo_DevelopmentMouseLymphMS-1 2.5e-08
Pbx3GOBP_Embryonic_Organ_DevelopmentMouseLymphMS-1 1.1e-11
Pbx3GOBP_NeurogenesisMouseLymphMS-1 4.1e-08
Pbx3GOBP_Pattern_Specification_ProcessMouseLymphMS-1 3.9e-12
Pbx3GOBP_RegionalizationMouseLymphMS-1 2.7e-12
Pbx3GOBP_Sensory_Organ_DevelopmentMouseLymphMS-1 1.5e-10
Pbx3GOBP_Sensory_System_DevelopmentMouseLymphMS-1 1.2e-07
Pbx3GOBP_RegionalizationMouseBrainrep_4 6.3e-07
Pbx3GOBP_Embryonic_Organ_DevelopmentMouseBrainrep_7 7.0e-07
Pbx3GOBP_Pattern_Specification_ProcessMouseBrainrep_7 1.0e-12
Pbx3GOBP_Central_Nervous_System_DevelopmentMouseBrainHP_ad_rep7 2.3e-07
Pbx3GOBP_Head_DevelopmentMouseBrainHP_ad_rep7 3.0e-07
Pbx3GOBP_NeurogenesisMouseBrainHP_ad_rep7 3.9e-07
Pbx3GOBP_Neuron_DevelopmentMouseBrainHP_ad_rep7 3.9e-07
Pbx3GOBP_Neuron_DifferentiationMouseBrainHP_ad_rep7 3.9e-07
Pbx3GOBP_Pattern_Specification_ProcessMouseBrainHP_ad_rep7 2.1e-10
Pbx3GOBP_RegionalizationMouseBrainHP_ad_rep7 2.8e-09
Pbx3GOBP_Sensory_Organ_DevelopmentMouseBrainHP_ad_rep7 4.6e-10
Pbx3GOBP_Sensory_System_DevelopmentMouseBrainHP_ad_rep7 1.6e-11
Pbx3GOBP_Anterior_Posterior_Pattern_SpecificationMouseBrainHP_adpolb_rep1 3.0e-08
Pbx3GOBP_Embryo_DevelopmentMouseBrainHP_polb_rep9 1.5e-10
Pbx3GOBP_Embryonic_Organ_DevelopmentMouseBrainHP_polb_rep9 9.6e-11

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Pbx3 function as liang/receptor in single cell data

TissueSourceSourceCellTargetTargetCellPMIDGroup

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Pbx3 function as liang/receptor across spatial transcriptomics tissue

check button Interactions using deconvoluted spatial data.

LigandReceptor LR pairTissueReplication

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Transcription factor for Pbx3 envolved

check buttonTranscription factor analysis using single cell data.
TFTissueGroupCell typesTarget genesRss score
PBX3IntestinedevelopmentEpitheliumFBLN1,OGN,DCN, etc.0.378
PBX3IntestinedevelopmentFibroblastsFBLN1,OGN,DCN, etc.0.47
PBX3IntestinedevelopmentMyoFibroblastsFBLN1,OGN,DCN, etc.0.295
PBX3IntestinedevelopmentNeuralFBLN1,OGN,DCN, etc.0.256
Pbx3KidneyShamCNTNt5dc2,Pdp1,Pnrc1, etc.0.411
Pbx3KidneyShamCD_ICNt5dc2,Pdp1,Pnrc1, etc.0.272
Pbx3KidneyShamTALNt5dc2,Pdp1,Pnrc1, etc.0.328

check button Motif information.
boxplot

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Related Drugs for Pbx3

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.9 2022-01-04)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for Pbx3

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease namePubmedsSource