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"/data/rluo4/database/Breast/Epi/sample_figures/uwot_projection_GSM4909279_3200_vargenes_all_32PCs.pdf" "33950524" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE161529" "10X Genomics" "GSE161529" "GSM4909279_Pal" "/home/lorihan/RPMfunc/PCTanno/Breast/Pal/initial_clustering/Pal_epithelial_immune_stromal_initial.rds" "6521" 4 "GSM4909280" "Breast" "BRCA1-mut" "Pal" "/data/rluo4/database/Breast/Epi/sample_figures/uwot_projection_GSM4909280_3200_vargenes_all_32PCs.pdf" "33950524" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE161529" "10X Genomics" "GSE161529" "GSM4909280_Pal" "/home/lorihan/RPMfunc/PCTanno/Breast/Pal/initial_clustering/Pal_epithelial_immune_stromal_initial.rds" "6726" 5 "GSM4909281" "Breast" "IDC" "Pal" "/data/rluo4/database/Breast/Epi/sample_figures/uwot_projection_GSM4909281_3200_vargenes_all_32PCs.pdf" "33950524" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE161529" "10X Genomics" "GSE161529" "GSM4909281_Pal" "/home/lorihan/RPMfunc/PCTanno/Breast/Pal/initial_clustering/Pal_epithelial_immune_stromal_initial.rds" "7388" 6 "GSM4909282" "Breast" "IDC" "Pal" "/data/rluo4/database/Breast/Epi/sample_figures/uwot_projection_GSM4909282_3200_vargenes_all_32PCs.pdf" "33950524" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE161529" "10X Genomics" "GSE161529" "GSM4909282_Pal" "/home/lorihan/RPMfunc/PCTanno/Breast/Pal/initial_clustering/Pal_epithelial_immune_stromal_initial.rds" "19662" 7 "GSM4909283" "Breast" "IDC" "Pal" "/data/rluo4/database/Breast/Epi/sample_figures/uwot_projection_GSM4909283_3200_vargenes_all_32PCs.pdf" "33950524" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE161529" "10X Genomics" "GSE161529" "GSM4909283_Pal" "/home/lorihan/RPMfunc/PCTanno/Breast/Pal/initial_clustering/Pal_epithelial_immune_stromal_initial.rds" "19691" 8 "GSM4909284" "Breast" "IDC" "Pal" "/data/rluo4/database/Breast/Epi/sample_figures/uwot_projection_GSM4909284_3200_vargenes_all_32PCs.pdf" 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"/home/lorihan/RPMfunc/PCTanno/Breast/Pal/initial_clustering/Pal_epithelial_immune_stromal_initial.rds" "27815" 14 "GSM4909290" "Breast" "IDC" "Pal" "/data/rluo4/database/Breast/Epi/sample_figures/uwot_projection_GSM4909290_3200_vargenes_all_32PCs.pdf" "33950524" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE161529" "10X Genomics" "GSE161529" "GSM4909290_Pal" "/home/lorihan/RPMfunc/PCTanno/Breast/Pal/initial_clustering/Pal_epithelial_immune_stromal_initial.rds" "29275" 15 "GSM4909291" "Breast" "IDC" "Pal" "/data/rluo4/database/Breast/Epi/sample_figures/uwot_projection_GSM4909291_3200_vargenes_all_32PCs.pdf" "33950524" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE161529" "10X Genomics" "GSE161529" "GSM4909291_Pal" "/home/lorihan/RPMfunc/PCTanno/Breast/Pal/initial_clustering/Pal_epithelial_immune_stromal_initial.rds" "30857" 16 "GSM4909292" "Breast" "IDC" "Pal" "/data/rluo4/database/Breast/Epi/sample_figures/uwot_projection_GSM4909292_3200_vargenes_all_32PCs.pdf" 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"IDC" "Pal" "/data/rluo4/database/Breast/Epi/sample_figures/uwot_projection_GSM4909295_3200_vargenes_all_32PCs.pdf" "33950524" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE161529" "10X Genomics" "GSE161529" "GSM4909295_Pal" "/home/lorihan/RPMfunc/PCTanno/Breast/Pal/initial_clustering/Pal_epithelial_immune_stromal_initial.rds" "38432" 20 "GSM4909296" "Breast" "IDC" "Pal" "/data/rluo4/database/Breast/Epi/sample_figures/uwot_projection_GSM4909296_3200_vargenes_all_32PCs.pdf" "33950524" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE161529" "10X Genomics" "GSE161529" "GSM4909296_Pal" "/home/lorihan/RPMfunc/PCTanno/Breast/Pal/initial_clustering/Pal_epithelial_immune_stromal_initial.rds" "43947" 21 "GSM4909297" "Breast" "IDC" "Pal" "/data/rluo4/database/Breast/Epi/sample_figures/uwot_projection_GSM4909297_3200_vargenes_all_32PCs.pdf" "33950524" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE161529" "10X Genomics" "GSE161529" "GSM4909297_Pal" "/home/lorihan/RPMfunc/PCTanno/Breast/Pal/initial_clustering/Pal_epithelial_immune_stromal_initial.rds" "49548" 22 "GSM4909298" "Breast" "IDC" "Pal" "/data/rluo4/database/Breast/Epi/sample_figures/uwot_projection_GSM4909298_3200_vargenes_all_32PCs.pdf" "33950524" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE161529" "10X Genomics" "GSE161529" "GSM4909298_Pal" "/home/lorihan/RPMfunc/PCTanno/Breast/Pal/initial_clustering/Pal_epithelial_immune_stromal_initial.rds" "51241" 23 "GSM4909299" "Breast" "IDC" "Pal" "/data/rluo4/database/Breast/Epi/sample_figures/uwot_projection_GSM4909299_3200_vargenes_all_32PCs.pdf" "33950524" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE161529" "10X Genomics" "GSE161529" "GSM4909299_Pal" "/home/lorihan/RPMfunc/PCTanno/Breast/Pal/initial_clustering/Pal_epithelial_immune_stromal_initial.rds" "57169" 24 "GSM4909300" "Breast" "IDC" "Pal" "/data/rluo4/database/Breast/Epi/sample_figures/uwot_projection_GSM4909300_3200_vargenes_all_32PCs.pdf" 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"/home/lorihan/RPMfunc/PCTanno/Breast/Pal/initial_clustering/Pal_epithelial_immune_stromal_initial.rds" "72183" 30 "GSM4909306" "Breast" "IDC" "Pal" "/data/rluo4/database/Breast/Epi/sample_figures/uwot_projection_GSM4909306_3200_vargenes_all_32PCs.pdf" "33950524" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE161529" "10X Genomics" "GSE161529" "GSM4909306_Pal" "/home/lorihan/RPMfunc/PCTanno/Breast/Pal/initial_clustering/Pal_epithelial_immune_stromal_initial.rds" "78311" 31 "GSM4909307" "Breast" "IDC" "Pal" "/data/rluo4/database/Breast/Epi/sample_figures/uwot_projection_GSM4909307_3200_vargenes_all_32PCs.pdf" "33950524" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE161529" "10X Genomics" "GSE161529" "GSM4909307_Pal" "/home/lorihan/RPMfunc/PCTanno/Breast/Pal/initial_clustering/Pal_epithelial_immune_stromal_initial.rds" "83630" 32 "GSM4909308" "Breast" "IDC" "Pal" "/data/rluo4/database/Breast/Epi/sample_figures/uwot_projection_GSM4909308_3200_vargenes_all_32PCs.pdf" "33950524" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE161529" "10X Genomics" "GSE161529" "GSM4909308_Pal" "/home/lorihan/RPMfunc/PCTanno/Breast/Pal/initial_clustering/Pal_epithelial_immune_stromal_initial.rds" "87960" 33 "GSM4909309" "Breast" "IDC" "Pal" "/data/rluo4/database/Breast/Epi/sample_figures/uwot_projection_GSM4909309_3200_vargenes_all_32PCs.pdf" "33950524" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE161529" "10X Genomics" "GSE161529" "GSM4909309_Pal" "/home/lorihan/RPMfunc/PCTanno/Breast/Pal/initial_clustering/Pal_epithelial_immune_stromal_initial.rds" "90711" 34 "GSM4909310" "Breast" "IDC" "Pal" "/data/rluo4/database/Breast/Epi/sample_figures/uwot_projection_GSM4909310_3200_vargenes_all_32PCs.pdf" "33950524" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE161529" "10X Genomics" "GSE161529" "GSM4909310_Pal" "/home/lorihan/RPMfunc/PCTanno/Breast/Pal/initial_clustering/Pal_epithelial_immune_stromal_initial.rds" "91158" 35 "GSM4909311" "Breast" 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"/home/lorihan/RPMfunc/PCTanno/Breast/Pal/initial_clustering/Pal_epithelial_immune_stromal_initial.rds" "105239" 38 "GSM4909314" "Breast" "IDC" "Pal" "/data/rluo4/database/Breast/Epi/sample_figures/uwot_projection_GSM4909314_3200_vargenes_all_32PCs.pdf" "33950524" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE161529" "10X Genomics" "GSE161529" "GSM4909314_Pal" "/home/lorihan/RPMfunc/PCTanno/Breast/Pal/initial_clustering/Pal_epithelial_immune_stromal_initial.rds" "105758" 39 "GSM4909315" "Breast" "IDC" "Pal" "/data/rluo4/database/Breast/Epi/sample_figures/uwot_projection_GSM4909315_3200_vargenes_all_32PCs.pdf" "33950524" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE161529" "10X Genomics" "GSE161529" "GSM4909315_Pal" "/home/lorihan/RPMfunc/PCTanno/Breast/Pal/initial_clustering/Pal_epithelial_immune_stromal_initial.rds" "108305" 40 "GSM4909316" "Breast" "IDC" "Pal" "/data/rluo4/database/Breast/Epi/sample_figures/uwot_projection_GSM4909316_3200_vargenes_all_32PCs.pdf" 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"/data/rluo4/database/Esophagus/Epi/sample_figures/uwot_projection_LZE24D1_3200_vargenes_all_32PCs.pdf" "35536873" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE199654" "10X Genomics" "GSE199654" "LZE24D1_Liu" "/home/lorihan/RPMfunc/PCTanno/Esophagus/Liu/initial_clustering/Liu_epithelial_immune_stromal_initial.rds" "1393554" 450 "LZE24D3" "Esophagus" "ADJ" "Liu" "/data/rluo4/database/Esophagus/Epi/sample_figures/uwot_projection_LZE24D3_3200_vargenes_all_32PCs.pdf" "35536873" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE199654" "10X Genomics" "GSE199654" "LZE24D3_Liu" "/home/lorihan/RPMfunc/PCTanno/Esophagus/Liu/initial_clustering/Liu_epithelial_immune_stromal_initial.rds" "1393575" 451 "LZE24N" "Esophagus" "ADJ" "Liu" "/data/rluo4/database/Esophagus/Epi/sample_figures/uwot_projection_LZE24N_3200_vargenes_all_32PCs.pdf" "35536873" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE199654" "10X Genomics" "GSE199654" "LZE24N_Liu" "/home/lorihan/RPMfunc/PCTanno/Esophagus/Liu/initial_clustering/Liu_epithelial_immune_stromal_initial.rds" "1393583" 452 "LZE24T" "Esophagus" "ESCC" "Liu" "/data/rluo4/database/Esophagus/Epi/sample_figures/uwot_projection_LZE24T_3200_vargenes_all_32PCs.pdf" "35536873" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE199654" "10X Genomics" "GSE199654" "LZE24T_Liu" "/home/lorihan/RPMfunc/PCTanno/Esophagus/Liu/initial_clustering/Liu_epithelial_immune_stromal_initial.rds" "1394005" 453 "LZE22D3" "Esophagus" "HGIN" "Liu" "/data/rluo4/database/Esophagus/Epi/sample_figures/uwot_projection_LZE22D3_3200_vargenes_all_32PCs.pdf" "35536873" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE199654" "10X Genomics" "GSE199654" "LZE22D3_Liu" "/home/lorihan/RPMfunc/PCTanno/Esophagus/Liu/initial_clustering/Liu_epithelial_immune_stromal_initial.rds" "1394068" 454 "LZE20N" "Esophagus" "ADJ" "Liu" "/data/rluo4/database/Esophagus/Epi/sample_figures/uwot_projection_LZE20N_3200_vargenes_all_32PCs.pdf" "35536873" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE199654" "10X Genomics" "GSE199654" "LZE20N_Liu" "/home/lorihan/RPMfunc/PCTanno/Esophagus/Liu/initial_clustering/Liu_epithelial_immune_stromal_initial.rds" "1394137" 455 "LZE21T" "Esophagus" "ESCC" "Liu" "/data/rluo4/database/Esophagus/Epi/sample_figures/uwot_projection_LZE21T_3200_vargenes_all_32PCs.pdf" "35536873" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE199654" "10X Genomics" "GSE199654" "LZE21T_Liu" "/home/lorihan/RPMfunc/PCTanno/Esophagus/Liu/initial_clustering/Liu_epithelial_immune_stromal_initial.rds" "1394410" 456 "LZE7D1" "Esophagus" "ADJ" "Liu" "/data/rluo4/database/Esophagus/Epi/sample_figures/uwot_projection_LZE7D1_3200_vargenes_all_32PCs.pdf" "35536873" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE199654" "10X Genomics" "GSE199654" "LZE7D1_Liu" "/home/lorihan/RPMfunc/PCTanno/Esophagus/Liu/initial_clustering/Liu_epithelial_immune_stromal_initial.rds" "1394414" 457 "LZE8D2" "Esophagus" "LGIN" "Liu" "/data/rluo4/database/Esophagus/Epi/sample_figures/uwot_projection_LZE8D2_3200_vargenes_all_32PCs.pdf" "35536873" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE199654" "10X Genomics" "GSE199654" "LZE8D2_Liu" "/home/lorihan/RPMfunc/PCTanno/Esophagus/Liu/initial_clustering/Liu_epithelial_immune_stromal_initial.rds" "1394417" 458 "LZE8N" "Esophagus" "ADJ" "Liu" "/data/rluo4/database/Esophagus/Epi/sample_figures/uwot_projection_LZE8N_3200_vargenes_all_32PCs.pdf" "35536873" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE199654" "10X Genomics" "GSE199654" "LZE8N_Liu" "/home/lorihan/RPMfunc/PCTanno/Esophagus/Liu/initial_clustering/Liu_epithelial_immune_stromal_initial.rds" "1394421" 459 "LZE6T" "Esophagus" "ESCC" "Liu" "/data/rluo4/database/Esophagus/Epi/sample_figures/uwot_projection_LZE6T_3200_vargenes_all_32PCs.pdf" "35536873" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE199654" "10X Genomics" "GSE199654" "LZE6T_Liu" "/home/lorihan/RPMfunc/PCTanno/Esophagus/Liu/initial_clustering/Liu_epithelial_immune_stromal_initial.rds" "1394809" 460 "LZE7D2" "Esophagus" "ADJ" "Liu" "/data/rluo4/database/Esophagus/Epi/sample_figures/uwot_projection_LZE7D2_3200_vargenes_all_32PCs.pdf" "35536873" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE199654" "10X Genomics" "GSE199654" "LZE7D2_Liu" "/home/lorihan/RPMfunc/PCTanno/Esophagus/Liu/initial_clustering/Liu_epithelial_immune_stromal_initial.rds" "1394813" 461 "P1T-E" "Esophagus" "ESCC" "Lin" "/data/rluo4/database/Esophagus/Epi/sample_figures/uwot_projection_P1T-E_3200_vargenes_all_32PCs.pdf" "34489433" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE160269" "10X Genomics" "GSE160269" "P1T-E_Lin" "/home/lorihan/RPMfunc/PCTanno/Esophagus/Lin/initial_clustering/Lin_epithelial_immune_stromal_initial.rds" "1395057" 462 "P2T-E" "Esophagus" "ESCC" 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"/home/lorihan/RPMfunc/PCTanno/Esophagus/Lin/initial_clustering/Lin_epithelial_immune_stromal_initial.rds" "1398755" 465 "P8T-E" "Esophagus" "ESCC" "Lin" "/data/rluo4/database/Esophagus/Epi/sample_figures/uwot_projection_P8T-E_3200_vargenes_all_32PCs.pdf" "34489433" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE160269" "10X Genomics" "GSE160269" "P8T-E_Lin" "/home/lorihan/RPMfunc/PCTanno/Esophagus/Lin/initial_clustering/Lin_epithelial_immune_stromal_initial.rds" "1399417" 466 "P9T-E" "Esophagus" "ESCC" "Lin" "/data/rluo4/database/Esophagus/Epi/sample_figures/uwot_projection_P9T-E_3200_vargenes_all_32PCs.pdf" "34489433" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE160269" "10X Genomics" "GSE160269" "P9T-E_Lin" "/home/lorihan/RPMfunc/PCTanno/Esophagus/Lin/initial_clustering/Lin_epithelial_immune_stromal_initial.rds" "1400356" 467 "P10T-E" "Esophagus" "ESCC" "Lin" "/data/rluo4/database/Esophagus/Epi/sample_figures/uwot_projection_P10T-E_3200_vargenes_all_32PCs.pdf" "34489433" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE160269" "10X Genomics" "GSE160269" "P10T-E_Lin" "/home/lorihan/RPMfunc/PCTanno/Esophagus/Lin/initial_clustering/Lin_epithelial_immune_stromal_initial.rds" "1401040" 468 "P11T-E" "Esophagus" "ESCC" "Lin" "/data/rluo4/database/Esophagus/Epi/sample_figures/uwot_projection_P11T-E_3200_vargenes_all_32PCs.pdf" "34489433" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE160269" "10X Genomics" "GSE160269" "P11T-E_Lin" "/home/lorihan/RPMfunc/PCTanno/Esophagus/Lin/initial_clustering/Lin_epithelial_immune_stromal_initial.rds" "1401135" 469 "P12T-E" "Esophagus" "ESCC" "Lin" "/data/rluo4/database/Esophagus/Epi/sample_figures/uwot_projection_P12T-E_3200_vargenes_all_32PCs.pdf" "34489433" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE160269" "10X Genomics" "GSE160269" "P12T-E_Lin" "/home/lorihan/RPMfunc/PCTanno/Esophagus/Lin/initial_clustering/Lin_epithelial_immune_stromal_initial.rds" "1401983" 470 "P15T-E" "Esophagus" "ESCC" "Lin" "/data/rluo4/database/Esophagus/Epi/sample_figures/uwot_projection_P15T-E_3200_vargenes_all_32PCs.pdf" "34489433" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE160269" "10X Genomics" "GSE160269" "P15T-E_Lin" "/home/lorihan/RPMfunc/PCTanno/Esophagus/Lin/initial_clustering/Lin_epithelial_immune_stromal_initial.rds" "1402741" 471 "P16T-E" "Esophagus" "ESCC" "Lin" "/data/rluo4/database/Esophagus/Epi/sample_figures/uwot_projection_P16T-E_3200_vargenes_all_32PCs.pdf" "34489433" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE160269" "10X Genomics" "GSE160269" "P16T-E_Lin" "/home/lorihan/RPMfunc/PCTanno/Esophagus/Lin/initial_clustering/Lin_epithelial_immune_stromal_initial.rds" "1405082" 472 "P17T-E" "Esophagus" "ESCC" "Lin" "/data/rluo4/database/Esophagus/Epi/sample_figures/uwot_projection_P17T-E_3200_vargenes_all_32PCs.pdf" "34489433" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE160269" "10X Genomics" "GSE160269" "P17T-E_Lin" "/home/lorihan/RPMfunc/PCTanno/Esophagus/Lin/initial_clustering/Lin_epithelial_immune_stromal_initial.rds" "1405306" 473 "P19T-E" "Esophagus" "ESCC" "Lin" "/data/rluo4/database/Esophagus/Epi/sample_figures/uwot_projection_P19T-E_3200_vargenes_all_32PCs.pdf" "34489433" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE160269" "10X Genomics" "GSE160269" "P19T-E_Lin" "/home/lorihan/RPMfunc/PCTanno/Esophagus/Lin/initial_clustering/Lin_epithelial_immune_stromal_initial.rds" "1405488" 474 "P20T-E" "Esophagus" "ESCC" "Lin" "/data/rluo4/database/Esophagus/Epi/sample_figures/uwot_projection_P20T-E_3200_vargenes_all_32PCs.pdf" "34489433" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE160269" "10X Genomics" "GSE160269" "P20T-E_Lin" "/home/lorihan/RPMfunc/PCTanno/Esophagus/Lin/initial_clustering/Lin_epithelial_immune_stromal_initial.rds" "1405957" 475 "P21T-E" "Esophagus" "ESCC" "Lin" "/data/rluo4/database/Esophagus/Epi/sample_figures/uwot_projection_P21T-E_3200_vargenes_all_32PCs.pdf" "34489433" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE160269" "10X Genomics" "GSE160269" "P21T-E_Lin" "/home/lorihan/RPMfunc/PCTanno/Esophagus/Lin/initial_clustering/Lin_epithelial_immune_stromal_initial.rds" "1406600" 476 "P22T-E" "Esophagus" "ESCC" "Lin" "/data/rluo4/database/Esophagus/Epi/sample_figures/uwot_projection_P22T-E_3200_vargenes_all_32PCs.pdf" "34489433" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE160269" "10X Genomics" "GSE160269" "P22T-E_Lin" "/home/lorihan/RPMfunc/PCTanno/Esophagus/Lin/initial_clustering/Lin_epithelial_immune_stromal_initial.rds" "1407190" 477 "P23T-E" "Esophagus" "ESCC" "Lin" "/data/rluo4/database/Esophagus/Epi/sample_figures/uwot_projection_P23T-E_3200_vargenes_all_32PCs.pdf" "34489433" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE160269" "10X Genomics" "GSE160269" "P23T-E_Lin" 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"/home/lorihan/RPMfunc/PCTanno/Stomach/Kim/initial_clustering/Kim_epithelial_immune_stromal_initial.rds" "1674746" 590 "Pat28-A" "Stomach" "CSG" "Kim" "/data/rluo4/database/Stomach/Epi/sample_figures/uwot_projection_Pat28-A_3200_vargenes_all_32PCs.pdf" "35087207" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE150290" "10X Genomics" "GSE150290" "Pat28-A_Kim" "/home/lorihan/RPMfunc/PCTanno/Stomach/Kim/initial_clustering/Kim_epithelial_immune_stromal_initial.rds" "1676365" 591 "Pat29-A" "Stomach" "CAG with IM" "Kim" "/data/rluo4/database/Stomach/Epi/sample_figures/uwot_projection_Pat29-A_3200_vargenes_all_32PCs.pdf" "35087207" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE150290" "10X Genomics" "GSE150290" "Pat29-A_Kim" "/home/lorihan/RPMfunc/PCTanno/Stomach/Kim/initial_clustering/Kim_epithelial_immune_stromal_initial.rds" "1677715" 592 "Pt1_Normal" "Stomach" "ADJ" "HY" "/data/rluo4/database/Stomach/Epi/sample_figures/uwot_projection_Pt1_Normal_3200_vargenes_all_32PCs.pdf" "34385296" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE167297" "10X Genomics" "GSE167297" "Pt1_Normal_HY" "/home/lorihan/RPMfunc/PCTanno/Stomach/HY/initial_clustering/HY_epithelial_immune_stromal_initial.rds" "1677784" 593 "Pt1_Superficial" "Stomach" "GC" "HY" "/data/rluo4/database/Stomach/Epi/sample_figures/uwot_projection_Pt1_Superficial_3200_vargenes_all_32PCs.pdf" "34385296" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE167297" "10X Genomics" "GSE167297" "Pt1_Superficial_HY" "/home/lorihan/RPMfunc/PCTanno/Stomach/HY/initial_clustering/HY_epithelial_immune_stromal_initial.rds" "1677988" 594 "Pt1_Deep" "Stomach" "GC" "HY" "/data/rluo4/database/Stomach/Epi/sample_figures/uwot_projection_Pt1_Deep_3200_vargenes_all_32PCs.pdf" "34385296" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE167297" "10X Genomics" "GSE167297" "Pt1_Deep_HY" 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"/home/lorihan/RPMfunc/PCTanno/Skin/Boldo/initial_clustering/Boldo_epithelial_immune_stromal_initial.rds" "4713457" 1298 "o3" "Skin" "Healthy" "Boldo" "No Image" "32327715" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE130973" "10X Genomics" "GSE130973" "o3_Boldo" "/home/lorihan/RPMfunc/PCTanno/Skin/Boldo/initial_clustering/Boldo_epithelial_immune_stromal_initial.rds" "4714025" 1299 "SC1" "Skin" "Healthy" "Xue" "No Image" "34042322" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE138669" "10X Genomics" "GSE138669" "SC1_Xue" "/home/lorihan/RPMfunc/PCTanno/Skin/Xue/initial_clustering/Xue_epithelial_immune_stromal_initial.rds" "4714658" 1300 "SC4" "Skin" "Healthy" "Xue" "No Image" "34042322" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE138669" "10X Genomics" "GSE138669" "SC4_Xue" "/home/lorihan/RPMfunc/PCTanno/Skin/Xue/initial_clustering/Xue_epithelial_immune_stromal_initial.rds" "4716088" 1301 "SC18" "Skin" "Healthy" "Xue" "No Image" "34042322" 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"/home/lorihan/RPMfunc/PCTanno/Skin/Xue/initial_clustering/Xue_epithelial_immune_stromal_initial.rds" "4719046" 1305 "SC50" "Skin" "Healthy" "Xue" "No Image" "34042322" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE138669" "10X Genomics" "GSE138669" "SC50_Xue" "/home/lorihan/RPMfunc/PCTanno/Skin/Xue/initial_clustering/Xue_epithelial_immune_stromal_initial.rds" "4720160" 1306 "SC68" "Skin" "Healthy" "Xue" "No Image" "34042322" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE138669" "10X Genomics" "GSE138669" "SC68_Xue" "/home/lorihan/RPMfunc/PCTanno/Skin/Xue/initial_clustering/Xue_epithelial_immune_stromal_initial.rds" "4720640" 1307 "SC124" "Skin" "Healthy" "Xue" "No Image" "34042322" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE138669" "10X Genomics" "GSE138669" "SC124_Xue" "/home/lorihan/RPMfunc/PCTanno/Skin/Xue/initial_clustering/Xue_epithelial_immune_stromal_initial.rds" "4721953" 1308 "SC125" "Skin" "Healthy" "Xue" "No Image" "34042322" 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"/data/rluo4/database/Thyroid/Epi/sample_figures/uwot_projection_female-WTA_3200_vargenes_all_32PCs.pdf" "33588924" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE158291" "BD Rhapsody" "GSE158291" "female-WTA_Peng" "/home/lorihan/RPMfunc/PCTanno/Thyroid/Peng/initial_clustering/Peng_epithelial_immune_stromal_initial.rds" "4830318" 1322 "nodule-WTA" "Thyroid" "Goiters" "Peng" "/data/rluo4/database/Thyroid/Epi/sample_figures/uwot_projection_nodule-WTA_3200_vargenes_all_32PCs.pdf" "33588924" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE158291" "BD Rhapsody" "GSE158291" "nodule-WTA_Peng" "/home/lorihan/RPMfunc/PCTanno/Thyroid/Peng/initial_clustering/Peng_epithelial_immune_stromal_initial.rds" "4830608" 1323 "PTC01" "Thyroid" "PTC" "Lu" "/data/rluo4/database/Thyroid/Epi/sample_figures/uwot_projection_PTC01_3200_vargenes_all_32PCs.pdf" "37053016" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE193581" "10X Genomics" "GSE193581" "PTC01_Lu" "/home/lorihan/RPMfunc/PCTanno/Thyroid/Lu/initial_clustering/Lu_epithelial_immune_stromal_initial.rds" "4834238" 1324 "PTC03" "Thyroid" "PTC" "Lu" "/data/rluo4/database/Thyroid/Epi/sample_figures/uwot_projection_PTC03_3200_vargenes_all_32PCs.pdf" "37053016" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE193581" "10X Genomics" "GSE193581" "PTC03_Lu" "/home/lorihan/RPMfunc/PCTanno/Thyroid/Lu/initial_clustering/Lu_epithelial_immune_stromal_initial.rds" "4834398" 1325 "NORM03" "Thyroid" "ADJ" "Lu" "/data/rluo4/database/Thyroid/Epi/sample_figures/uwot_projection_NORM03_3200_vargenes_all_32PCs.pdf" "37053016" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE193581" "10X Genomics" "GSE193581" "NORM03_Lu" "/home/lorihan/RPMfunc/PCTanno/Thyroid/Lu/initial_clustering/Lu_epithelial_immune_stromal_initial.rds" "4834566" 1326 "PTC04" "Thyroid" "PTC" "Lu" "/data/rluo4/database/Thyroid/Epi/sample_figures/uwot_projection_PTC04_3200_vargenes_all_32PCs.pdf" "37053016" 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"/data/rluo4/database/Thyroid/Epi/sample_figures/uwot_projection_PTC07_3200_vargenes_all_32PCs.pdf" "37053016" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE193581" "10X Genomics" "GSE193581" "PTC07_Lu" "/home/lorihan/RPMfunc/PCTanno/Thyroid/Lu/initial_clustering/Lu_epithelial_immune_stromal_initial.rds" "4840111" 1330 "NORM07" "Thyroid" "ADJ" "Lu" "/data/rluo4/database/Thyroid/Epi/sample_figures/uwot_projection_NORM07_3200_vargenes_all_32PCs.pdf" "37053016" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE193581" "10X Genomics" "GSE193581" "NORM07_Lu" "/home/lorihan/RPMfunc/PCTanno/Thyroid/Lu/initial_clustering/Lu_epithelial_immune_stromal_initial.rds" "4840276" 1331 "ATC08" "Thyroid" "ATC" "Lu" "/data/rluo4/database/Thyroid/Epi/sample_figures/uwot_projection_ATC08_3200_vargenes_all_32PCs.pdf" "37053016" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE193581" "10X Genomics" "GSE193581" "ATC08_Lu" "/home/lorihan/RPMfunc/PCTanno/Thyroid/Lu/initial_clustering/Lu_epithelial_immune_stromal_initial.rds" "4840511" 1332 "ATC09" "Thyroid" "ATC" "Lu" "/data/rluo4/database/Thyroid/Epi/sample_figures/uwot_projection_ATC09_3200_vargenes_all_32PCs.pdf" "37053016" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE193581" "10X Genomics" "GSE193581" "ATC09_Lu" "/home/lorihan/RPMfunc/PCTanno/Thyroid/Lu/initial_clustering/Lu_epithelial_immune_stromal_initial.rds" "4841444" 1333 "ATC10" "Thyroid" "ATC" "Lu" "/data/rluo4/database/Thyroid/Epi/sample_figures/uwot_projection_ATC10_3200_vargenes_all_32PCs.pdf" "37053016" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE193581" "10X Genomics" "GSE193581" "ATC10_Lu" "/home/lorihan/RPMfunc/PCTanno/Thyroid/Lu/initial_clustering/Lu_epithelial_immune_stromal_initial.rds" "4841514" 1334 "ATC11" "Thyroid" "ATC" "Lu" "/data/rluo4/database/Thyroid/Epi/sample_figures/uwot_projection_ATC11_3200_vargenes_all_32PCs.pdf" "37053016" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE193581" "10X Genomics" "GSE193581" "ATC11_Lu" "/home/lorihan/RPMfunc/PCTanno/Thyroid/Lu/initial_clustering/Lu_epithelial_immune_stromal_initial.rds" "4841714" 1335 "ATC12" "Thyroid" "ATC" "Lu" "/data/rluo4/database/Thyroid/Epi/sample_figures/uwot_projection_ATC12_3200_vargenes_all_32PCs.pdf" "37053016" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE193581" "10X Genomics" "GSE193581" "ATC12_Lu" "/home/lorihan/RPMfunc/PCTanno/Thyroid/Lu/initial_clustering/Lu_epithelial_immune_stromal_initial.rds" "4843109" 1336 "ATC13" "Thyroid" "ATC" "Lu" "/data/rluo4/database/Thyroid/Epi/sample_figures/uwot_projection_ATC13_3200_vargenes_all_32PCs.pdf" "37053016" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE193581" "10X Genomics" "GSE193581" "ATC13_Lu" "/home/lorihan/RPMfunc/PCTanno/Thyroid/Lu/initial_clustering/Lu_epithelial_immune_stromal_initial.rds" "4846933" 1337 "ATC14" "Thyroid" "ATC" "Lu" "/data/rluo4/database/Thyroid/Epi/sample_figures/uwot_projection_ATC14_3200_vargenes_all_32PCs.pdf" "37053016" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE193581" "10X Genomics" "GSE193581" "ATC14_Lu" "/home/lorihan/RPMfunc/PCTanno/Thyroid/Lu/initial_clustering/Lu_epithelial_immune_stromal_initial.rds" "4846956" 1338 "ATC15" "Thyroid" "ATC" "Lu" "/data/rluo4/database/Thyroid/Epi/sample_figures/uwot_projection_ATC15_3200_vargenes_all_32PCs.pdf" "37053016" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE193581" "10X Genomics" "GSE193581" "ATC15_Lu" "/home/lorihan/RPMfunc/PCTanno/Thyroid/Lu/initial_clustering/Lu_epithelial_immune_stromal_initial.rds" "4847012" 1339 "ATC17" "Thyroid" "ATC" "Lu" "/data/rluo4/database/Thyroid/Epi/sample_figures/uwot_projection_ATC17_3200_vargenes_all_32PCs.pdf" "37053016" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE193581" "10X Genomics" "GSE193581" "ATC17_Lu" "/home/lorihan/RPMfunc/PCTanno/Thyroid/Lu/initial_clustering/Lu_epithelial_immune_stromal_initial.rds" "4847021" 1340 "NORM18" "Thyroid" "ADJ" "Lu" "/data/rluo4/database/Thyroid/Epi/sample_figures/uwot_projection_NORM18_3200_vargenes_all_32PCs.pdf" "37053016" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE193581" "10X Genomics" "GSE193581" "NORM18_Lu" "/home/lorihan/RPMfunc/PCTanno/Thyroid/Lu/initial_clustering/Lu_epithelial_immune_stromal_initial.rds" "4847148" 1341 "NORM19" "Thyroid" "ADJ" "Lu" "/data/rluo4/database/Thyroid/Epi/sample_figures/uwot_projection_NORM19_3200_vargenes_all_32PCs.pdf" "37053016" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE193581" "10X Genomics" "GSE193581" "NORM19_Lu" "/home/lorihan/RPMfunc/PCTanno/Thyroid/Lu/initial_clustering/Lu_epithelial_immune_stromal_initial.rds" "4847445" 1342 "NORM20" "Thyroid" "ADJ" "Lu" "/data/rluo4/database/Thyroid/Epi/sample_figures/uwot_projection_NORM20_3200_vargenes_all_32PCs.pdf" "37053016" 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"/data/rluo4/database/Thyroid/Epi/sample_figures/uwot_projection_ATC2_3200_vargenes_all_32PCs.pdf" "33462507" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148673" "10X Genomics" "GSE148673" "ATC2_Gao" "/home/lorihan/RPMfunc/PCTanno/Thyroid/Gao/initial_clustering/Gao_epithelial_immune_stromal_initial.rds" "4848647" 1346 "ATC3" "Thyroid" "ATC" "Gao" "/data/rluo4/database/Thyroid/Epi/sample_figures/uwot_projection_ATC3_3200_vargenes_all_32PCs.pdf" "33462507" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148673" "10X Genomics" "GSE148673" "ATC3_Gao" "/home/lorihan/RPMfunc/PCTanno/Thyroid/Gao/initial_clustering/Gao_epithelial_immune_stromal_initial.rds" "4849049" 1347 "ATC4" "Thyroid" "ATC" "Gao" "/data/rluo4/database/Thyroid/Epi/sample_figures/uwot_projection_ATC4_3200_vargenes_all_32PCs.pdf" "33462507" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148673" "10X Genomics" "GSE148673" "ATC4_Gao" "/home/lorihan/RPMfunc/PCTanno/Thyroid/Gao/initial_clustering/Gao_epithelial_immune_stromal_initial.rds" "4850424" 1348 "ATC5" "Thyroid" "ATC" "Gao" "/data/rluo4/database/Thyroid/Epi/sample_figures/uwot_projection_ATC5_3200_vargenes_all_32PCs.pdf" "33462507" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148673" "10X Genomics" "GSE148673" "ATC5_Gao" "/home/lorihan/RPMfunc/PCTanno/Thyroid/Gao/initial_clustering/Gao_epithelial_immune_stromal_initial.rds" "4855150" 1349 "AdultThyroid_1" "Thyroid" "Healthy" "AdultThyroid" "No Image" "32214235" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE134355" "Microwell-seq" "GSE134355" "AdultThyroid_1_AdultThyroid" "/home/lorihan/RPMfunc/PCTanno/All/AdultThyroid.h5seurat" "4860680" 1350 "AdultThyroid_2" "Thyroid" "Healthy" "AdultThyroid" "No Image" "32214235" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE134355" "Microwell-seq" "GSE134355" "AdultThyroid_2_AdultThyroid" "/home/lorihan/RPMfunc/PCTanno/All/AdultThyroid.h5seurat" "4910271" 1351 "PTC02" "Thyroid" "PTC" "Lu" "/data/rluo4/database/Thyroid/Epi/sample_figures/uwot_projection_PTC02_3200_vargenes_all_32PCs.pdf" "37053016" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE193581" "10X Genomics" "GSE193581" "PTC02_Lu" "/home/lorihan/RPMfunc/PCTanno/Thyroid/Lu/initial_clustering/Lu_epithelial_immune_stromal_initial.rds" "4950178" 1352 "ATC18" "Thyroid" "ATC" "Lu" "/data/rluo4/database/Thyroid/Epi/sample_figures/uwot_projection_ATC18_3200_vargenes_all_32PCs.pdf" "37053016" "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE193581" "10X Genomics" "GSE193581" "ATC18_Lu" "/home/lorihan/RPMfunc/PCTanno/Thyroid/Lu/initial_clustering/Lu_epithelial_immune_stromal_initial.rds"