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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 9125

FusionGeneSummary for CYFIP1_UBR4

check button Fusion gene summary
Fusion gene informationFusion gene name: CYFIP1_UBR4
Fusion gene ID: 9125
HgeneTgene
Gene symbol

CYFIP1

UBR4

Gene ID

23191

23352

Gene namecytoplasmic FMR1 interacting protein 1ubiquitin protein ligase E3 component n-recognin 4
SynonymsP140SRA-1|SHYC|SRA-1|SRA1RBAF600|ZUBR1|p600
Cytomap

15q11.2

1p36.13

Type of geneprotein-codingprotein-coding
Descriptioncytoplasmic FMR1-interacting protein 1cytoplasmic FMRP interacting protein 1selective hybridizing clonespecifically Rac1-associated protein 1E3 ubiquitin-protein ligase UBR4N-recognin-4RING-type E3 ubiquitin transferase UBR4retinoblastoma-associated factor 600-like proteinretinoblastoma-associated factor of 600 kDazinc finger UBR1-type protein 1
Modification date2018052320180523
UniProtAcc

Q7L576

Q5T4S7

Ensembl transtripts involved in fusion geneENST00000313077, ENST00000560848, 
ENST00000435939, 
ENST00000375217, 
ENST00000375226, ENST00000375267, 
ENST00000375254, ENST00000375225, 
ENST00000429347, ENST00000375224, 
ENST00000543981, ENST00000467272, 
ENST00000375218, 
Fusion gene scores* DoF score6 X 6 X 3=1089 X 10 X 4=360
# samples 510
** MAII scorelog2(5/108*10)=-1.11103131238874
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(10/360*10)=-1.84799690655495
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: CYFIP1 [Title/Abstract] AND UBR4 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
TgeneUBR4

GO:0006511

ubiquitin-dependent protein catabolic process

23932781


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChiTaRS3.1BF748810CYFIP1chr15

22929835

-UBR4chr1

19423732

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
Frame-shitENST00000313077ENST00000375217CYFIP1chr15

22929835

-UBR4chr1

19423732

+
Frame-shitENST00000313077ENST00000375226CYFIP1chr15

22929835

-UBR4chr1

19423732

+
Frame-shitENST00000313077ENST00000375267CYFIP1chr15

22929835

-UBR4chr1

19423732

+
Frame-shitENST00000313077ENST00000375254CYFIP1chr15

22929835

-UBR4chr1

19423732

+
5CDS-intronENST00000313077ENST00000375225CYFIP1chr15

22929835

-UBR4chr1

19423732

+
5CDS-intronENST00000313077ENST00000429347CYFIP1chr15

22929835

-UBR4chr1

19423732

+
5CDS-intronENST00000313077ENST00000375224CYFIP1chr15

22929835

-UBR4chr1

19423732

+
5CDS-intronENST00000313077ENST00000543981CYFIP1chr15

22929835

-UBR4chr1

19423732

+
5CDS-5UTRENST00000313077ENST00000467272CYFIP1chr15

22929835

-UBR4chr1

19423732

+
5CDS-intronENST00000313077ENST00000375218CYFIP1chr15

22929835

-UBR4chr1

19423732

+
Frame-shitENST00000560848ENST00000375217CYFIP1chr15

22929835

-UBR4chr1

19423732

+
Frame-shitENST00000560848ENST00000375226CYFIP1chr15

22929835

-UBR4chr1

19423732

+
Frame-shitENST00000560848ENST00000375267CYFIP1chr15

22929835

-UBR4chr1

19423732

+
Frame-shitENST00000560848ENST00000375254CYFIP1chr15

22929835

-UBR4chr1

19423732

+
5CDS-intronENST00000560848ENST00000375225CYFIP1chr15

22929835

-UBR4chr1

19423732

+
5CDS-intronENST00000560848ENST00000429347CYFIP1chr15

22929835

-UBR4chr1

19423732

+
5CDS-intronENST00000560848ENST00000375224CYFIP1chr15

22929835

-UBR4chr1

19423732

+
5CDS-intronENST00000560848ENST00000543981CYFIP1chr15

22929835

-UBR4chr1

19423732

+
5CDS-5UTRENST00000560848ENST00000467272CYFIP1chr15

22929835

-UBR4chr1

19423732

+
5CDS-intronENST00000560848ENST00000375218CYFIP1chr15

22929835

-UBR4chr1

19423732

+
intron-3CDSENST00000435939ENST00000375217CYFIP1chr15

22929835

-UBR4chr1

19423732

+
intron-3CDSENST00000435939ENST00000375226CYFIP1chr15

22929835

-UBR4chr1

19423732

+
intron-3CDSENST00000435939ENST00000375267CYFIP1chr15

22929835

-UBR4chr1

19423732

+
intron-3CDSENST00000435939ENST00000375254CYFIP1chr15

22929835

-UBR4chr1

19423732

+
intron-intronENST00000435939ENST00000375225CYFIP1chr15

22929835

-UBR4chr1

19423732

+
intron-intronENST00000435939ENST00000429347CYFIP1chr15

22929835

-UBR4chr1

19423732

+
intron-intronENST00000435939ENST00000375224CYFIP1chr15

22929835

-UBR4chr1

19423732

+
intron-intronENST00000435939ENST00000543981CYFIP1chr15

22929835

-UBR4chr1

19423732

+
intron-5UTRENST00000435939ENST00000467272CYFIP1chr15

22929835

-UBR4chr1

19423732

+
intron-intronENST00000435939ENST00000375218CYFIP1chr15

22929835

-UBR4chr1

19423732

+

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FusionProtFeatures for CYFIP1_UBR4


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
CYFIP1

Q7L576

UBR4

Q5T4S7

Component of the CYFIP1-EIF4E-FMR1 complex which bindsto the mRNA cap and mediates translational repression. In theCYFIP1-EIF4E-FMR1 complex this subunit is an adapter between EIF4Eand FMR1. Promotes the translation repression activity of FMR1 inbrain probably by mediating its association with EIF4E and mRNA(By similarity). Regulates formation of membrane ruffles andlamellipodia. Plays a role in axon outgrowth. Binds to F-actin butnot to RNA. Part of the WAVE complex that regulates actin filamentreorganization via its interaction with the Arp2/3 complex. Actinremodeling activity is regulated by RAC1. Regulator of epithelialmorphogenesis. As component of the WAVE1 complex, required forBDNF-NTRK2 endocytic trafficking and signaling from earlyendosomes (By similarity). May act as an invasion suppressor incancers. {ECO:0000250|UniProtKB:Q7TMB8,ECO:0000269|PubMed:16260607, ECO:0000269|PubMed:19524508,ECO:0000269|PubMed:21107423, ECO:0000269|PubMed:9417078}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for CYFIP1_UBR4


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for CYFIP1_UBR4


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for CYFIP1_UBR4


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for CYFIP1_UBR4


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneCYFIP1C0036341Schizophrenia1PSYGENET