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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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Fusion gene ID: 8615

FusionGeneSummary for CSMD2_TMEM222

check button Fusion gene summary
Fusion gene informationFusion gene name: CSMD2_TMEM222
Fusion gene ID: 8615
HgeneTgene
Gene symbol

CSMD2

TMEM222

Gene ID

114784

84065

Gene nameCUB and Sushi multiple domains 2transmembrane protein 222
SynonymsdJ1007G16.1|dJ1007G16.2|dJ947L8.1C1orf160
Cytomap

1p35.1

1p36.11

Type of geneprotein-codingprotein-coding
DescriptionCUB and sushi domain-containing protein 2CUB and Sushi (SCR repeat) domainCUB and sushi multiple domains protein 2transmembrane protein 222
Modification date2018040320180519
UniProtAcc

Q7Z408

Q9H0R3

Ensembl transtripts involved in fusion geneENST00000373381, ENST00000373380, 
ENST00000373377, ENST00000373388, 
ENST00000489419, ENST00000338325, 
ENST00000374076, ENST00000608611, 
Fusion gene scores* DoF score5 X 4 X 4=805 X 2 X 5=50
# samples 55
** MAII scorelog2(5/80*10)=-0.678071905112638
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(5/50*10)=0
Context

PubMed: CSMD2 [Title/Abstract] AND TMEM222 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGARVGBMTCGA-28-2514-01ACSMD2chr1

34312485

-TMEM222chr1

27657211

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
In-frameENST00000373381ENST00000374076CSMD2chr1

34312485

-TMEM222chr1

27657211

+
In-frameENST00000373381ENST00000608611CSMD2chr1

34312485

-TMEM222chr1

27657211

+
intron-3CDSENST00000373380ENST00000374076CSMD2chr1

34312485

-TMEM222chr1

27657211

+
intron-3CDSENST00000373380ENST00000608611CSMD2chr1

34312485

-TMEM222chr1

27657211

+
intron-3CDSENST00000373377ENST00000374076CSMD2chr1

34312485

-TMEM222chr1

27657211

+
intron-3CDSENST00000373377ENST00000608611CSMD2chr1

34312485

-TMEM222chr1

27657211

+
intron-3CDSENST00000373388ENST00000374076CSMD2chr1

34312485

-TMEM222chr1

27657211

+
intron-3CDSENST00000373388ENST00000608611CSMD2chr1

34312485

-TMEM222chr1

27657211

+
intron-3CDSENST00000489419ENST00000374076CSMD2chr1

34312485

-TMEM222chr1

27657211

+
intron-3CDSENST00000489419ENST00000608611CSMD2chr1

34312485

-TMEM222chr1

27657211

+
intron-3CDSENST00000338325ENST00000374076CSMD2chr1

34312485

-TMEM222chr1

27657211

+
intron-3CDSENST00000338325ENST00000608611CSMD2chr1

34312485

-TMEM222chr1

27657211

+

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FusionProtFeatures for CSMD2_TMEM222


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
CSMD2

Q7Z408

TMEM222

Q9H0R3


check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
>>>>>
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
TgeneTMEM222chr1:34312485chr1:27657211ENST00000374076+06186_18664209Topological domainExtracellular
TgeneTMEM222chr1:34312485chr1:27657211ENST00000374076+06208_20864209Topological domainCytoplasmic
TgeneTMEM222chr1:34312485chr1:27657211ENST00000374076+0677_16464209Topological domainCytoplasmic
TgeneTMEM222chr1:34312485chr1:27657211ENST00000374076+06165_18564209TransmembraneHelical
TgeneTMEM222chr1:34312485chr1:27657211ENST00000374076+06187_20764209TransmembraneHelical

- In-frame and not-retained protein feature among the 13 regional features.
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneCSMD2chr1:34312485chr1:27657211ENST00000373380-1241037_1096-741168DomainSushi 6
HgeneCSMD2chr1:34312485chr1:27657211ENST00000373380-1241098_1206-741168DomainCUB 7
HgeneCSMD2chr1:34312485chr1:27657211ENST00000373380-1241209_1269-741168DomainSushi 7
HgeneCSMD2chr1:34312485chr1:27657211ENST00000373380-1241271_1380-741168DomainCUB 8
HgeneCSMD2chr1:34312485chr1:27657211ENST00000373380-124137_198-741168DomainSushi 1
HgeneCSMD2chr1:34312485chr1:27657211ENST00000373380-1241383_1443-741168DomainSushi 8
HgeneCSMD2chr1:34312485chr1:27657211ENST00000373380-1241445_1553-741168DomainCUB 9
HgeneCSMD2chr1:34312485chr1:27657211ENST00000373380-1241556_1617-741168DomainSushi 9
HgeneCSMD2chr1:34312485chr1:27657211ENST00000373380-1241619_1727-741168DomainCUB 10
HgeneCSMD2chr1:34312485chr1:27657211ENST00000373380-1241733_1794-741168DomainSushi 10
HgeneCSMD2chr1:34312485chr1:27657211ENST00000373380-1241796_1904-741168DomainCUB 11
HgeneCSMD2chr1:34312485chr1:27657211ENST00000373380-1241907_1966-741168DomainSushi 11
HgeneCSMD2chr1:34312485chr1:27657211ENST00000373380-1241968_2076-741168DomainCUB 12
HgeneCSMD2chr1:34312485chr1:27657211ENST00000373380-124202_306-741168DomainCUB 2
HgeneCSMD2chr1:34312485chr1:27657211ENST00000373380-1242121_2180-741168DomainSushi 12
HgeneCSMD2chr1:34312485chr1:27657211ENST00000373380-1242182_2293-741168DomainCUB 13
HgeneCSMD2chr1:34312485chr1:27657211ENST00000373380-1242292_2353-741168DomainSushi 13
HgeneCSMD2chr1:34312485chr1:27657211ENST00000373380-1242355_2466-741168DomainCUB 14
HgeneCSMD2chr1:34312485chr1:27657211ENST00000373380-1242466_2528-741168DomainSushi 14
HgeneCSMD2chr1:34312485chr1:27657211ENST00000373380-1242529_2590-741168DomainSushi 15
HgeneCSMD2chr1:34312485chr1:27657211ENST00000373380-1242591_2655-741168DomainSushi 16
HgeneCSMD2chr1:34312485chr1:27657211ENST00000373380-1242656_2713-741168DomainSushi 17
HgeneCSMD2chr1:34312485chr1:27657211ENST00000373380-12426_134-741168DomainCUB 1
HgeneCSMD2chr1:34312485chr1:27657211ENST00000373380-1242714_2771-741168DomainSushi 18
HgeneCSMD2chr1:34312485chr1:27657211ENST00000373380-1242772_2829-741168DomainSushi 19
HgeneCSMD2chr1:34312485chr1:27657211ENST00000373380-1242833_2890-741168DomainSushi 20
HgeneCSMD2chr1:34312485chr1:27657211ENST00000373380-1242891_2949-741168DomainSushi 21
HgeneCSMD2chr1:34312485chr1:27657211ENST00000373380-1242950_3009-741168DomainSushi 22
HgeneCSMD2chr1:34312485chr1:27657211ENST00000373380-1243010_3067-741168DomainSushi 23
HgeneCSMD2chr1:34312485chr1:27657211ENST00000373380-1243068_3125-741168DomainSushi 24
HgeneCSMD2chr1:34312485chr1:27657211ENST00000373380-1243129_3187-741168DomainSushi 25
HgeneCSMD2chr1:34312485chr1:27657211ENST00000373380-1243188_3247-741168DomainSushi 26
HgeneCSMD2chr1:34312485chr1:27657211ENST00000373380-124341_402-741168DomainSushi 2
HgeneCSMD2chr1:34312485chr1:27657211ENST00000373380-124405_516-741168DomainCUB 3
HgeneCSMD2chr1:34312485chr1:27657211ENST00000373380-124519_576-741168DomainSushi 3
HgeneCSMD2chr1:34312485chr1:27657211ENST00000373380-124578_686-741168DomainCUB 4
HgeneCSMD2chr1:34312485chr1:27657211ENST00000373380-124689_750-741168DomainSushi 4
HgeneCSMD2chr1:34312485chr1:27657211ENST00000373380-124752_860-741168DomainCUB 5
HgeneCSMD2chr1:34312485chr1:27657211ENST00000373380-124865_922-741168DomainSushi 5
HgeneCSMD2chr1:34312485chr1:27657211ENST00000373380-124924_1034-741168DomainCUB 6
HgeneCSMD2chr1:34312485chr1:27657211ENST00000373380-1241_3408-741168Topological domainExtracellular
HgeneCSMD2chr1:34312485chr1:27657211ENST00000373380-1243430_3487-741168Topological domainCytoplasmic
HgeneCSMD2chr1:34312485chr1:27657211ENST00000373380-1243409_3429-741168TransmembraneHelical
TgeneTMEM222chr1:34312485chr1:27657211ENST00000374076+061_5564209Topological domainExtracellular
TgeneTMEM222chr1:34312485chr1:27657211ENST00000374076+0656_7664209TransmembraneHelical


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FusionGeneSequence for CSMD2_TMEM222


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.
>In-frame_CSMD2_ENST00000373381_chr1_34312485_-_TMEM222_ENST00000374076_chr1_27657211_+_488aa
MPRSRGRELGRCGCPAGRARGETGISALVPGAGSRWGRPPPPTPPPLLLLLGCGLLSVSAAAGQNCTFQLHGPNGTVESPGFPYGYPNYA
NCTWTITAEEQHRIQLVFQSFALEEDFDVLSVFDGPPQPENLRTRLTGFQLPATIVSAATTLSLRLISDYAVSAQGFHATYEVLPSHTCG
NPGRLPNGIQQGSTFNLGDKVRYSCNLGFFLEGHAVLTCHAGSENSATWDFPLPSCRADDACGGTLRGQSGIISSPHFPSEYHNNADCTW
TILAELGDTIALVFIDFQLEDGYDFLEVTGTEGSSLWFTGASLPAPVISSKNWLRLHFTSDGNHRQRGFSAQYQGGFSPSSATWASAHPQ
ESFGTSRAPTLSQRTTWPLESLPSTGSWTLLRSMLAGPTHGTRLCTTPLRSTSTACTISAVTTATRTWHWPXIXCATTTAPTGIWXRSAS

>In-frame_CSMD2_ENST00000373381_chr1_34312485_-_TMEM222_ENST00000608611_chr1_27657211_+_488aa
MPRSRGRELGRCGCPAGRARGETGISALVPGAGSRWGRPPPPTPPPLLLLLGCGLLSVSAAAGQNCTFQLHGPNGTVESPGFPYGYPNYA
NCTWTITAEEQHRIQLVFQSFALEEDFDVLSVFDGPPQPENLRTRLTGFQLPATIVSAATTLSLRLISDYAVSAQGFHATYEVLPSHTCG
NPGRLPNGIQQGSTFNLGDKVRYSCNLGFFLEGHAVLTCHAGSENSATWDFPLPSCRADDACGGTLRGQSGIISSPHFPSEYHNNADCTW
TILAELGDTIALVFIDFQLEDGYDFLEVTGTEGSSLWFTGASLPAPVISSKNWLRLHFTSDGNHRQRGFSAQYQGGFSPSSATWASAHPQ
ESFGTSRAPTLSQRTTWPLESLPSTGSWTLLRSMLAGPTHGTRLCTTPLRSTSTACTISAVTTATRTWHWPXIXCATTTAPTGIWXRSAS


* Fusion transcript sequences (only coding sequence (CDS) region).
>In-frame_CSMD2_ENST00000373381_chr1_34312485_-_TMEM222_ENST00000374076_chr1_27657211_+_1466nt
ATGCCGCGCTCGCGGGGACGGGAGCTGGGGCGCTGCGGCTGCCCCGCGGGGAGGGCTCGCGGCGAAACCGGGATTTCGGCGCTTGTGCCG
GGCGCCGGGAGCCGCTGGGGCCGCCCGCCGCCGCCAACGCCGCCGCCTCTGCTGCTGTTGCTGGGCTGTGGGTTGCTCAGCGTCTCGGCC
GCCGCGGGCCAGAACTGCACGTTCCAACTGCACGGTCCCAATGGGACAGTTGAGAGCCCAGGGTTCCCATATGGCTACCCCAATTACGCC
AACTGCACGTGGACCATCACCGCGGAAGAGCAGCACAGAATCCAGCTTGTGTTCCAGTCCTTTGCCCTGGAAGAGGACTTTGATGTCCTG
TCGGTGTTTGATGGTCCACCCCAGCCAGAGAATCTGCGTACGAGGCTCACAGGCTTTCAGCTGCCAGCCACCATTGTTAGTGCAGCCACC
ACCCTCTCTCTGCGCCTCATCAGCGACTATGCAGTCAGTGCCCAAGGCTTCCACGCCACCTATGAAGTTCTCCCCAGCCACACATGTGGG
AACCCAGGGAGGCTGCCCAATGGCATCCAGCAGGGTTCAACCTTCAACCTCGGTGACAAGGTCCGCTACAGCTGCAACCTTGGCTTCTTC
CTGGAGGGCCACGCCGTGCTCACCTGCCACGCTGGCTCTGAGAACAGCGCCACGTGGGACTTCCCCCTGCCTTCCTGCAGAGCTGATGAT
GCCTGTGGTGGGACCCTGCGGGGCCAGAGTGGCATCATCTCCAGCCCCCACTTCCCCTCGGAGTACCATAACAATGCCGACTGCACATGG
ACCATCCTGGCTGAGCTGGGGGACACCATCGCCCTGGTGTTTATTGACTTCCAGCTGGAGGATGGTTACGACTTTCTGGAAGTCACTGGG
ACAGAAGGCTCCTCCCTCTGGTTCACCGGAGCCAGCCTCCCAGCCCCCGTTATCAGCAGCAAGAACTGGCTGCGACTGCACTTCACATCG
GATGGCAACCACCGGCAGCGCGGATTCAGTGCCCAATACCAAGGTGGTTTTTCCCCATCATCGGCCACATGGGCATCTGCACATCCACAG
GAGTCATTCGGGACTTCGCGGGCCCCTACTTTGTCTCAGAGGACAACATGGCCTTTGGAAAGCCTGCCAAGTACTGGAAGTTGGACCCTG
CTCAGGTCTATGCTAGCGGGCCCAACGCATGGGACACGGCTGTGCACGACGCCTCTGAGGAGTACAAGCACCGCATGCACAATCTCTGCT
GTGACAACTGCCACTCGCACGTGGCATTGGCCCTGAATCTGATGCGCTACAACAACAGCACCAACTGGAATATGGTGACGCTCTGCTTCT
TCTGCCTGCTCTACGGGAAGTACGTCAGCGTTGGGGCCTTCGTGAAGACCTGGCTGCCCTTCATCCTTCTCCTGGGCATCATCCTCACCG

>In-frame_CSMD2_ENST00000373381_chr1_34312485_-_TMEM222_ENST00000608611_chr1_27657211_+_1466nt
ATGCCGCGCTCGCGGGGACGGGAGCTGGGGCGCTGCGGCTGCCCCGCGGGGAGGGCTCGCGGCGAAACCGGGATTTCGGCGCTTGTGCCG
GGCGCCGGGAGCCGCTGGGGCCGCCCGCCGCCGCCAACGCCGCCGCCTCTGCTGCTGTTGCTGGGCTGTGGGTTGCTCAGCGTCTCGGCC
GCCGCGGGCCAGAACTGCACGTTCCAACTGCACGGTCCCAATGGGACAGTTGAGAGCCCAGGGTTCCCATATGGCTACCCCAATTACGCC
AACTGCACGTGGACCATCACCGCGGAAGAGCAGCACAGAATCCAGCTTGTGTTCCAGTCCTTTGCCCTGGAAGAGGACTTTGATGTCCTG
TCGGTGTTTGATGGTCCACCCCAGCCAGAGAATCTGCGTACGAGGCTCACAGGCTTTCAGCTGCCAGCCACCATTGTTAGTGCAGCCACC
ACCCTCTCTCTGCGCCTCATCAGCGACTATGCAGTCAGTGCCCAAGGCTTCCACGCCACCTATGAAGTTCTCCCCAGCCACACATGTGGG
AACCCAGGGAGGCTGCCCAATGGCATCCAGCAGGGTTCAACCTTCAACCTCGGTGACAAGGTCCGCTACAGCTGCAACCTTGGCTTCTTC
CTGGAGGGCCACGCCGTGCTCACCTGCCACGCTGGCTCTGAGAACAGCGCCACGTGGGACTTCCCCCTGCCTTCCTGCAGAGCTGATGAT
GCCTGTGGTGGGACCCTGCGGGGCCAGAGTGGCATCATCTCCAGCCCCCACTTCCCCTCGGAGTACCATAACAATGCCGACTGCACATGG
ACCATCCTGGCTGAGCTGGGGGACACCATCGCCCTGGTGTTTATTGACTTCCAGCTGGAGGATGGTTACGACTTTCTGGAAGTCACTGGG
ACAGAAGGCTCCTCCCTCTGGTTCACCGGAGCCAGCCTCCCAGCCCCCGTTATCAGCAGCAAGAACTGGCTGCGACTGCACTTCACATCG
GATGGCAACCACCGGCAGCGCGGATTCAGTGCCCAATACCAAGGTGGTTTTTCCCCATCATCGGCCACATGGGCATCTGCACATCCACAG
GAGTCATTCGGGACTTCGCGGGCCCCTACTTTGTCTCAGAGGACAACATGGCCTTTGGAAAGCCTGCCAAGTACTGGAAGTTGGACCCTG
CTCAGGTCTATGCTAGCGGGCCCAACGCATGGGACACGGCTGTGCACGACGCCTCTGAGGAGTACAAGCACCGCATGCACAATCTCTGCT
GTGACAACTGCCACTCGCACGTGGCATTGGCCCTGAATCTGATGCGCTACAACAACAGCACCAACTGGAATATGGTGACGCTCTGCTTCT
TCTGCCTGCTCTACGGGAAGTACGTCAGCGTTGGGGCCTTCGTGAAGACCTGGCTGCCCTTCATCCTTCTCCTGGGCATCATCCTCACCG


* Fusion transcript sequences (Full-length transcript).
>In-frame_CSMD2_ENST00000373381_chr1_34312485_-_TMEM222_ENST00000374076_chr1_27657211_+_2577nt
GAGAGCGCAGCGCGCCTCTCCCCGGCCGGGCGGACACTTGGTTCATTCCAGCCGCAGAAGCTCAGGGCTCCCGCGTACCGGGATTTTTTC
CGAGCAGAAAAAAGCTCCAGAGCTCTCCTGACCTCCTTTCTCCTCGGCGGCGAGCGGAGCCTCTCCCTCGGCGCTGCCGGCCGCGCCATG
CCGCGCTCGCGGGGACGGGAGCTGGGGCGCTGCGGCTGCCCCGCGGGGAGGGCTCGCGGCGAAACCGGGATTTCGGCGCTTGTGCCGGGC
GCCGGGAGCCGCTGGGGCCGCCCGCCGCCGCCAACGCCGCCGCCTCTGCTGCTGTTGCTGGGCTGTGGGTTGCTCAGCGTCTCGGCCGCC
GCGGGCCAGAACTGCACGTTCCAACTGCACGGTCCCAATGGGACAGTTGAGAGCCCAGGGTTCCCATATGGCTACCCCAATTACGCCAAC
TGCACGTGGACCATCACCGCGGAAGAGCAGCACAGAATCCAGCTTGTGTTCCAGTCCTTTGCCCTGGAAGAGGACTTTGATGTCCTGTCG
GTGTTTGATGGTCCACCCCAGCCAGAGAATCTGCGTACGAGGCTCACAGGCTTTCAGCTGCCAGCCACCATTGTTAGTGCAGCCACCACC
CTCTCTCTGCGCCTCATCAGCGACTATGCAGTCAGTGCCCAAGGCTTCCACGCCACCTATGAAGTTCTCCCCAGCCACACATGTGGGAAC
CCAGGGAGGCTGCCCAATGGCATCCAGCAGGGTTCAACCTTCAACCTCGGTGACAAGGTCCGCTACAGCTGCAACCTTGGCTTCTTCCTG
GAGGGCCACGCCGTGCTCACCTGCCACGCTGGCTCTGAGAACAGCGCCACGTGGGACTTCCCCCTGCCTTCCTGCAGAGCTGATGATGCC
TGTGGTGGGACCCTGCGGGGCCAGAGTGGCATCATCTCCAGCCCCCACTTCCCCTCGGAGTACCATAACAATGCCGACTGCACATGGACC
ATCCTGGCTGAGCTGGGGGACACCATCGCCCTGGTGTTTATTGACTTCCAGCTGGAGGATGGTTACGACTTTCTGGAAGTCACTGGGACA
GAAGGCTCCTCCCTCTGGTTCACCGGAGCCAGCCTCCCAGCCCCCGTTATCAGCAGCAAGAACTGGCTGCGACTGCACTTCACATCGGAT
GGCAACCACCGGCAGCGCGGATTCAGTGCCCAATACCAAGGTGGTTTTTCCCCATCATCGGCCACATGGGCATCTGCACATCCACAGGAG
TCATTCGGGACTTCGCGGGCCCCTACTTTGTCTCAGAGGACAACATGGCCTTTGGAAAGCCTGCCAAGTACTGGAAGTTGGACCCTGCTC
AGGTCTATGCTAGCGGGCCCAACGCATGGGACACGGCTGTGCACGACGCCTCTGAGGAGTACAAGCACCGCATGCACAATCTCTGCTGTG
ACAACTGCCACTCGCACGTGGCATTGGCCCTGAATCTGATGCGCTACAACAACAGCACCAACTGGAATATGGTGACGCTCTGCTTCTTCT
GCCTGCTCTACGGGAAGTACGTCAGCGTTGGGGCCTTCGTGAAGACCTGGCTGCCCTTCATCCTTCTCCTGGGCATCATCCTCACCGTCA
GCCTGGTCTTTAACCTCCGGTGATGGCTGCTCGGTGGCCCCACACCCACCAGGGTCCCGAGGAAACAGCCGCCATCCCTTTTGGTTCCAG
ATTTTTTTCTCCTCACCCCAAAAGGCAGGGTTGGGCCTGCTGTTGTGGACCGGGGGTCGGGGCTGGCAGGATGGAAGGACTGAGGACCAG
CATGAAGTGGGGGTTTGTTGTCTCCCTGCCTCTCAGAAGCACCCTGTCCCCTCCTCCCCAGGCCTGTGACTCCGGCCCTGGAAGCCCCTT
TGTTCTTCTGTTGAAAGGCTTTGGCTTCCCGCTGTAGAGCTGCTCCCGCCACCACCTGCTGGGGTCCTGCCTCAGCCCAGTGCCCAGTAT
GGGGAGAGGAGGACATTTGGGCTCACCTGTCAAGGTGGCCCTGGGACCAGAGCTGGTCCCAGCATGGGGTGCACCGGGTACACTTAACGT
GTCTCTATAAGCCAAGTTGCTTCAGGACCTTCACCACTGGCCTCTAGAATGGTCCAGAGGGGCTGGCTGGGTCCCTTTGTCAGACTCCTG
CCGGCAGCTGCCCTGGGGGACATGTGTGCCCATCTGGCATCCTCCAGCCCGTGCAGTCCGCTCTTCACTGTTCCACGGCCTCCCAGTGCC
TCCCAGCATTGGACCCATCTCCCCCTGCAGTTTGAGGCCAGAGAGGTGAGTGGACCTGACAAGTGCCAGAGTAACCGTGTAGACAGAGCA
GTGTAGACAGCACTCAGCCCCAGCCCCAGGTGTGGACCTCATGCTGGTGATGGCTCCCCTGGGTGGCCTGCCAGCACAGCCAGTGCCATC
AGGGAGCTGAAGGGGCTGTCCCCCACCTAACTCCAGCTCCCCCTTCACGTTGTCACCAAGGCCCTGTGCCGCCCGCCTCGCCCCCCTGCT

>In-frame_CSMD2_ENST00000373381_chr1_34312485_-_TMEM222_ENST00000608611_chr1_27657211_+_2577nt
GAGAGCGCAGCGCGCCTCTCCCCGGCCGGGCGGACACTTGGTTCATTCCAGCCGCAGAAGCTCAGGGCTCCCGCGTACCGGGATTTTTTC
CGAGCAGAAAAAAGCTCCAGAGCTCTCCTGACCTCCTTTCTCCTCGGCGGCGAGCGGAGCCTCTCCCTCGGCGCTGCCGGCCGCGCCATG
CCGCGCTCGCGGGGACGGGAGCTGGGGCGCTGCGGCTGCCCCGCGGGGAGGGCTCGCGGCGAAACCGGGATTTCGGCGCTTGTGCCGGGC
GCCGGGAGCCGCTGGGGCCGCCCGCCGCCGCCAACGCCGCCGCCTCTGCTGCTGTTGCTGGGCTGTGGGTTGCTCAGCGTCTCGGCCGCC
GCGGGCCAGAACTGCACGTTCCAACTGCACGGTCCCAATGGGACAGTTGAGAGCCCAGGGTTCCCATATGGCTACCCCAATTACGCCAAC
TGCACGTGGACCATCACCGCGGAAGAGCAGCACAGAATCCAGCTTGTGTTCCAGTCCTTTGCCCTGGAAGAGGACTTTGATGTCCTGTCG
GTGTTTGATGGTCCACCCCAGCCAGAGAATCTGCGTACGAGGCTCACAGGCTTTCAGCTGCCAGCCACCATTGTTAGTGCAGCCACCACC
CTCTCTCTGCGCCTCATCAGCGACTATGCAGTCAGTGCCCAAGGCTTCCACGCCACCTATGAAGTTCTCCCCAGCCACACATGTGGGAAC
CCAGGGAGGCTGCCCAATGGCATCCAGCAGGGTTCAACCTTCAACCTCGGTGACAAGGTCCGCTACAGCTGCAACCTTGGCTTCTTCCTG
GAGGGCCACGCCGTGCTCACCTGCCACGCTGGCTCTGAGAACAGCGCCACGTGGGACTTCCCCCTGCCTTCCTGCAGAGCTGATGATGCC
TGTGGTGGGACCCTGCGGGGCCAGAGTGGCATCATCTCCAGCCCCCACTTCCCCTCGGAGTACCATAACAATGCCGACTGCACATGGACC
ATCCTGGCTGAGCTGGGGGACACCATCGCCCTGGTGTTTATTGACTTCCAGCTGGAGGATGGTTACGACTTTCTGGAAGTCACTGGGACA
GAAGGCTCCTCCCTCTGGTTCACCGGAGCCAGCCTCCCAGCCCCCGTTATCAGCAGCAAGAACTGGCTGCGACTGCACTTCACATCGGAT
GGCAACCACCGGCAGCGCGGATTCAGTGCCCAATACCAAGGTGGTTTTTCCCCATCATCGGCCACATGGGCATCTGCACATCCACAGGAG
TCATTCGGGACTTCGCGGGCCCCTACTTTGTCTCAGAGGACAACATGGCCTTTGGAAAGCCTGCCAAGTACTGGAAGTTGGACCCTGCTC
AGGTCTATGCTAGCGGGCCCAACGCATGGGACACGGCTGTGCACGACGCCTCTGAGGAGTACAAGCACCGCATGCACAATCTCTGCTGTG
ACAACTGCCACTCGCACGTGGCATTGGCCCTGAATCTGATGCGCTACAACAACAGCACCAACTGGAATATGGTGACGCTCTGCTTCTTCT
GCCTGCTCTACGGGAAGTACGTCAGCGTTGGGGCCTTCGTGAAGACCTGGCTGCCCTTCATCCTTCTCCTGGGCATCATCCTCACCGTCA
GCCTGGTCTTTAACCTCCGGTGATGGCTGCTCGGTGGCCCCACACCCACCAGGGTCCCGAGGAAACAGCCGCCATCCCTTTTGGTTCCAG
ATTTTTTTCTCCTCACCCCAAAAGGCAGGGTTGGGCCTGCTGTTGTGGACCGGGGGTCGGGGCTGGCAGGATGGAAGGACTGAGGACCAG
CATGAAGTGGGGGTTTGTTGTCTCCCTGCCTCTCAGAAGCACCCTGTCCCCTCCTCCCCAGGCCTGTGACTCCGGCCCTGGAAGCCCCTT
TGTTCTTCTGTTGAAAGGCTTTGGCTTCCCGCTGTAGAGCTGCTCCCGCCACCACCTGCTGGGGTCCTGCCTCAGCCCAGTGCCCAGTAT
GGGGAGAGGAGGACATTTGGGCTCACCTGTCAAGGTGGCCCTGGGACCAGAGCTGGTCCCAGCATGGGGTGCACCGGGTACACTTAACGT
GTCTCTATAAGCCAAGTTGCTTCAGGACCTTCACCACTGGCCTCTAGAATGGTCCAGAGGGGCTGGCTGGGTCCCTTTGTCAGACTCCTG
CCGGCAGCTGCCCTGGGGGACATGTGTGCCCATCTGGCATCCTCCAGCCCGTGCAGTCCGCTCTTCACTGTTCCACGGCCTCCCAGTGCC
TCCCAGCATTGGACCCATCTCCCCCTGCAGTTTGAGGCCAGAGAGGTGAGTGGACCTGACAAGTGCCAGAGTAACCGTGTAGACAGAGCA
GTGTAGACAGCACTCAGCCCCAGCCCCAGGTGTGGACCTCATGCTGGTGATGGCTCCCCTGGGTGGCCTGCCAGCACAGCCAGTGCCATC
AGGGAGCTGAAGGGGCTGTCCCCCACCTAACTCCAGCTCCCCCTTCACGTTGTCACCAAGGCCCTGTGCCGCCCGCCTCGCCCCCCTGCT


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FusionGenePPI for CSMD2_TMEM222


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
CSMD2TMEM222ABHD16A, PRSS23, MOV10, NXF1, GNAI3, TCTN2, CREB3, UPK1A, TMEM206, RTN4, LMNA


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for CSMD2_TMEM222


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for CSMD2_TMEM222


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneCSMD2C0011570Mental Depression1PSYGENET
HgeneCSMD2C0011581Depressive disorder1PSYGENET
HgeneCSMD2C0036341Schizophrenia1PSYGENET