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Fusion gene ID: 8615 |
FusionGeneSummary for CSMD2_TMEM222 |
Fusion gene summary |
Fusion gene information | Fusion gene name: CSMD2_TMEM222 | Fusion gene ID: 8615 | Hgene | Tgene | Gene symbol | CSMD2 | TMEM222 | Gene ID | 114784 | 84065 |
Gene name | CUB and Sushi multiple domains 2 | transmembrane protein 222 | |
Synonyms | dJ1007G16.1|dJ1007G16.2|dJ947L8.1 | C1orf160 | |
Cytomap | 1p35.1 | 1p36.11 | |
Type of gene | protein-coding | protein-coding | |
Description | CUB and sushi domain-containing protein 2CUB and Sushi (SCR repeat) domainCUB and sushi multiple domains protein 2 | transmembrane protein 222 | |
Modification date | 20180403 | 20180519 | |
UniProtAcc | Q7Z408 | Q9H0R3 | |
Ensembl transtripts involved in fusion gene | ENST00000373381, ENST00000373380, ENST00000373377, ENST00000373388, ENST00000489419, ENST00000338325, | ENST00000374076, ENST00000608611, | |
Fusion gene scores | * DoF score | 5 X 4 X 4=80 | 5 X 2 X 5=50 |
# samples | 5 | 5 | |
** MAII score | log2(5/80*10)=-0.678071905112638 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(5/50*10)=0 | |
Context | PubMed: CSMD2 [Title/Abstract] AND TMEM222 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | GBM | TCGA-28-2514-01A | CSMD2 | chr1 | 34312485 | - | TMEM222 | chr1 | 27657211 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000373381 | ENST00000374076 | CSMD2 | chr1 | 34312485 | - | TMEM222 | chr1 | 27657211 | + |
In-frame | ENST00000373381 | ENST00000608611 | CSMD2 | chr1 | 34312485 | - | TMEM222 | chr1 | 27657211 | + |
intron-3CDS | ENST00000373380 | ENST00000374076 | CSMD2 | chr1 | 34312485 | - | TMEM222 | chr1 | 27657211 | + |
intron-3CDS | ENST00000373380 | ENST00000608611 | CSMD2 | chr1 | 34312485 | - | TMEM222 | chr1 | 27657211 | + |
intron-3CDS | ENST00000373377 | ENST00000374076 | CSMD2 | chr1 | 34312485 | - | TMEM222 | chr1 | 27657211 | + |
intron-3CDS | ENST00000373377 | ENST00000608611 | CSMD2 | chr1 | 34312485 | - | TMEM222 | chr1 | 27657211 | + |
intron-3CDS | ENST00000373388 | ENST00000374076 | CSMD2 | chr1 | 34312485 | - | TMEM222 | chr1 | 27657211 | + |
intron-3CDS | ENST00000373388 | ENST00000608611 | CSMD2 | chr1 | 34312485 | - | TMEM222 | chr1 | 27657211 | + |
intron-3CDS | ENST00000489419 | ENST00000374076 | CSMD2 | chr1 | 34312485 | - | TMEM222 | chr1 | 27657211 | + |
intron-3CDS | ENST00000489419 | ENST00000608611 | CSMD2 | chr1 | 34312485 | - | TMEM222 | chr1 | 27657211 | + |
intron-3CDS | ENST00000338325 | ENST00000374076 | CSMD2 | chr1 | 34312485 | - | TMEM222 | chr1 | 27657211 | + |
intron-3CDS | ENST00000338325 | ENST00000608611 | CSMD2 | chr1 | 34312485 | - | TMEM222 | chr1 | 27657211 | + |
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FusionProtFeatures for CSMD2_TMEM222 |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
CSMD2 | TMEM222 |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | >TMEM222 | chr1:34312485 | chr1:27657211 | ENST00000374076 | + | 0 | 6 | 186_186 | 64 | 209 | Topological domain | Extracellular |
Tgene | >TMEM222 | chr1:34312485 | chr1:27657211 | ENST00000374076 | + | 0 | 6 | 208_208 | 64 | 209 | Topological domain | Cytoplasmic |
Tgene | >TMEM222 | chr1:34312485 | chr1:27657211 | ENST00000374076 | + | 0 | 6 | 77_164 | 64 | 209 | Topological domain | Cytoplasmic |
Tgene | >TMEM222 | chr1:34312485 | chr1:27657211 | ENST00000374076 | + | 0 | 6 | 165_185 | 64 | 209 | Transmembrane | Helical |
Tgene | >TMEM222 | chr1:34312485 | chr1:27657211 | ENST00000374076 | + | 0 | 6 | 187_207 | 64 | 209 | Transmembrane | Helical |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | >CSMD2 | chr1:34312485 | chr1:27657211 | ENST00000373380 | - | 1 | 24 | 1037_1096 | -74 | 1168 | Domain | Sushi 6 |
Hgene | >CSMD2 | chr1:34312485 | chr1:27657211 | ENST00000373380 | - | 1 | 24 | 1098_1206 | -74 | 1168 | Domain | CUB 7 |
Hgene | >CSMD2 | chr1:34312485 | chr1:27657211 | ENST00000373380 | - | 1 | 24 | 1209_1269 | -74 | 1168 | Domain | Sushi 7 |
Hgene | >CSMD2 | chr1:34312485 | chr1:27657211 | ENST00000373380 | - | 1 | 24 | 1271_1380 | -74 | 1168 | Domain | CUB 8 |
Hgene | >CSMD2 | chr1:34312485 | chr1:27657211 | ENST00000373380 | - | 1 | 24 | 137_198 | -74 | 1168 | Domain | Sushi 1 |
Hgene | >CSMD2 | chr1:34312485 | chr1:27657211 | ENST00000373380 | - | 1 | 24 | 1383_1443 | -74 | 1168 | Domain | Sushi 8 |
Hgene | >CSMD2 | chr1:34312485 | chr1:27657211 | ENST00000373380 | - | 1 | 24 | 1445_1553 | -74 | 1168 | Domain | CUB 9 |
Hgene | >CSMD2 | chr1:34312485 | chr1:27657211 | ENST00000373380 | - | 1 | 24 | 1556_1617 | -74 | 1168 | Domain | Sushi 9 |
Hgene | >CSMD2 | chr1:34312485 | chr1:27657211 | ENST00000373380 | - | 1 | 24 | 1619_1727 | -74 | 1168 | Domain | CUB 10 |
Hgene | >CSMD2 | chr1:34312485 | chr1:27657211 | ENST00000373380 | - | 1 | 24 | 1733_1794 | -74 | 1168 | Domain | Sushi 10 |
Hgene | >CSMD2 | chr1:34312485 | chr1:27657211 | ENST00000373380 | - | 1 | 24 | 1796_1904 | -74 | 1168 | Domain | CUB 11 |
Hgene | >CSMD2 | chr1:34312485 | chr1:27657211 | ENST00000373380 | - | 1 | 24 | 1907_1966 | -74 | 1168 | Domain | Sushi 11 |
Hgene | >CSMD2 | chr1:34312485 | chr1:27657211 | ENST00000373380 | - | 1 | 24 | 1968_2076 | -74 | 1168 | Domain | CUB 12 |
Hgene | >CSMD2 | chr1:34312485 | chr1:27657211 | ENST00000373380 | - | 1 | 24 | 202_306 | -74 | 1168 | Domain | CUB 2 |
Hgene | >CSMD2 | chr1:34312485 | chr1:27657211 | ENST00000373380 | - | 1 | 24 | 2121_2180 | -74 | 1168 | Domain | Sushi 12 |
Hgene | >CSMD2 | chr1:34312485 | chr1:27657211 | ENST00000373380 | - | 1 | 24 | 2182_2293 | -74 | 1168 | Domain | CUB 13 |
Hgene | >CSMD2 | chr1:34312485 | chr1:27657211 | ENST00000373380 | - | 1 | 24 | 2292_2353 | -74 | 1168 | Domain | Sushi 13 |
Hgene | >CSMD2 | chr1:34312485 | chr1:27657211 | ENST00000373380 | - | 1 | 24 | 2355_2466 | -74 | 1168 | Domain | CUB 14 |
Hgene | >CSMD2 | chr1:34312485 | chr1:27657211 | ENST00000373380 | - | 1 | 24 | 2466_2528 | -74 | 1168 | Domain | Sushi 14 |
Hgene | >CSMD2 | chr1:34312485 | chr1:27657211 | ENST00000373380 | - | 1 | 24 | 2529_2590 | -74 | 1168 | Domain | Sushi 15 |
Hgene | >CSMD2 | chr1:34312485 | chr1:27657211 | ENST00000373380 | - | 1 | 24 | 2591_2655 | -74 | 1168 | Domain | Sushi 16 |
Hgene | >CSMD2 | chr1:34312485 | chr1:27657211 | ENST00000373380 | - | 1 | 24 | 2656_2713 | -74 | 1168 | Domain | Sushi 17 |
Hgene | >CSMD2 | chr1:34312485 | chr1:27657211 | ENST00000373380 | - | 1 | 24 | 26_134 | -74 | 1168 | Domain | CUB 1 |
Hgene | >CSMD2 | chr1:34312485 | chr1:27657211 | ENST00000373380 | - | 1 | 24 | 2714_2771 | -74 | 1168 | Domain | Sushi 18 |
Hgene | >CSMD2 | chr1:34312485 | chr1:27657211 | ENST00000373380 | - | 1 | 24 | 2772_2829 | -74 | 1168 | Domain | Sushi 19 |
Hgene | >CSMD2 | chr1:34312485 | chr1:27657211 | ENST00000373380 | - | 1 | 24 | 2833_2890 | -74 | 1168 | Domain | Sushi 20 |
Hgene | >CSMD2 | chr1:34312485 | chr1:27657211 | ENST00000373380 | - | 1 | 24 | 2891_2949 | -74 | 1168 | Domain | Sushi 21 |
Hgene | >CSMD2 | chr1:34312485 | chr1:27657211 | ENST00000373380 | - | 1 | 24 | 2950_3009 | -74 | 1168 | Domain | Sushi 22 |
Hgene | >CSMD2 | chr1:34312485 | chr1:27657211 | ENST00000373380 | - | 1 | 24 | 3010_3067 | -74 | 1168 | Domain | Sushi 23 |
Hgene | >CSMD2 | chr1:34312485 | chr1:27657211 | ENST00000373380 | - | 1 | 24 | 3068_3125 | -74 | 1168 | Domain | Sushi 24 |
Hgene | >CSMD2 | chr1:34312485 | chr1:27657211 | ENST00000373380 | - | 1 | 24 | 3129_3187 | -74 | 1168 | Domain | Sushi 25 |
Hgene | >CSMD2 | chr1:34312485 | chr1:27657211 | ENST00000373380 | - | 1 | 24 | 3188_3247 | -74 | 1168 | Domain | Sushi 26 |
Hgene | >CSMD2 | chr1:34312485 | chr1:27657211 | ENST00000373380 | - | 1 | 24 | 341_402 | -74 | 1168 | Domain | Sushi 2 |
Hgene | >CSMD2 | chr1:34312485 | chr1:27657211 | ENST00000373380 | - | 1 | 24 | 405_516 | -74 | 1168 | Domain | CUB 3 |
Hgene | >CSMD2 | chr1:34312485 | chr1:27657211 | ENST00000373380 | - | 1 | 24 | 519_576 | -74 | 1168 | Domain | Sushi 3 |
Hgene | >CSMD2 | chr1:34312485 | chr1:27657211 | ENST00000373380 | - | 1 | 24 | 578_686 | -74 | 1168 | Domain | CUB 4 |
Hgene | >CSMD2 | chr1:34312485 | chr1:27657211 | ENST00000373380 | - | 1 | 24 | 689_750 | -74 | 1168 | Domain | Sushi 4 |
Hgene | >CSMD2 | chr1:34312485 | chr1:27657211 | ENST00000373380 | - | 1 | 24 | 752_860 | -74 | 1168 | Domain | CUB 5 |
Hgene | >CSMD2 | chr1:34312485 | chr1:27657211 | ENST00000373380 | - | 1 | 24 | 865_922 | -74 | 1168 | Domain | Sushi 5 |
Hgene | >CSMD2 | chr1:34312485 | chr1:27657211 | ENST00000373380 | - | 1 | 24 | 924_1034 | -74 | 1168 | Domain | CUB 6 |
Hgene | >CSMD2 | chr1:34312485 | chr1:27657211 | ENST00000373380 | - | 1 | 24 | 1_3408 | -74 | 1168 | Topological domain | Extracellular |
Hgene | >CSMD2 | chr1:34312485 | chr1:27657211 | ENST00000373380 | - | 1 | 24 | 3430_3487 | -74 | 1168 | Topological domain | Cytoplasmic |
Hgene | >CSMD2 | chr1:34312485 | chr1:27657211 | ENST00000373380 | - | 1 | 24 | 3409_3429 | -74 | 1168 | Transmembrane | Helical |
Tgene | TMEM222 | chr1:34312485 | chr1:27657211 | ENST00000374076 | + | 0 | 6 | 1_55 | 64 | 209 | Topological domain | Extracellular |
Tgene | TMEM222 | chr1:34312485 | chr1:27657211 | ENST00000374076 | + | 0 | 6 | 56_76 | 64 | 209 | Transmembrane | Helical |
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FusionGeneSequence for CSMD2_TMEM222 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_CSMD2_ENST00000373381_chr1_34312485_-_TMEM222_ENST00000374076_chr1_27657211_+_488aa MPRSRGRELGRCGCPAGRARGETGISALVPGAGSRWGRPPPPTPPPLLLLLGCGLLSVSAAAGQNCTFQLHGPNGTVESPGFPYGYPNYA NCTWTITAEEQHRIQLVFQSFALEEDFDVLSVFDGPPQPENLRTRLTGFQLPATIVSAATTLSLRLISDYAVSAQGFHATYEVLPSHTCG NPGRLPNGIQQGSTFNLGDKVRYSCNLGFFLEGHAVLTCHAGSENSATWDFPLPSCRADDACGGTLRGQSGIISSPHFPSEYHNNADCTW TILAELGDTIALVFIDFQLEDGYDFLEVTGTEGSSLWFTGASLPAPVISSKNWLRLHFTSDGNHRQRGFSAQYQGGFSPSSATWASAHPQ ESFGTSRAPTLSQRTTWPLESLPSTGSWTLLRSMLAGPTHGTRLCTTPLRSTSTACTISAVTTATRTWHWPXIXCATTTAPTGIWXRSAS >In-frame_CSMD2_ENST00000373381_chr1_34312485_-_TMEM222_ENST00000608611_chr1_27657211_+_488aa MPRSRGRELGRCGCPAGRARGETGISALVPGAGSRWGRPPPPTPPPLLLLLGCGLLSVSAAAGQNCTFQLHGPNGTVESPGFPYGYPNYA NCTWTITAEEQHRIQLVFQSFALEEDFDVLSVFDGPPQPENLRTRLTGFQLPATIVSAATTLSLRLISDYAVSAQGFHATYEVLPSHTCG NPGRLPNGIQQGSTFNLGDKVRYSCNLGFFLEGHAVLTCHAGSENSATWDFPLPSCRADDACGGTLRGQSGIISSPHFPSEYHNNADCTW TILAELGDTIALVFIDFQLEDGYDFLEVTGTEGSSLWFTGASLPAPVISSKNWLRLHFTSDGNHRQRGFSAQYQGGFSPSSATWASAHPQ ESFGTSRAPTLSQRTTWPLESLPSTGSWTLLRSMLAGPTHGTRLCTTPLRSTSTACTISAVTTATRTWHWPXIXCATTTAPTGIWXRSAS |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_CSMD2_ENST00000373381_chr1_34312485_-_TMEM222_ENST00000374076_chr1_27657211_+_1466nt ATGCCGCGCTCGCGGGGACGGGAGCTGGGGCGCTGCGGCTGCCCCGCGGGGAGGGCTCGCGGCGAAACCGGGATTTCGGCGCTTGTGCCG GGCGCCGGGAGCCGCTGGGGCCGCCCGCCGCCGCCAACGCCGCCGCCTCTGCTGCTGTTGCTGGGCTGTGGGTTGCTCAGCGTCTCGGCC GCCGCGGGCCAGAACTGCACGTTCCAACTGCACGGTCCCAATGGGACAGTTGAGAGCCCAGGGTTCCCATATGGCTACCCCAATTACGCC AACTGCACGTGGACCATCACCGCGGAAGAGCAGCACAGAATCCAGCTTGTGTTCCAGTCCTTTGCCCTGGAAGAGGACTTTGATGTCCTG TCGGTGTTTGATGGTCCACCCCAGCCAGAGAATCTGCGTACGAGGCTCACAGGCTTTCAGCTGCCAGCCACCATTGTTAGTGCAGCCACC ACCCTCTCTCTGCGCCTCATCAGCGACTATGCAGTCAGTGCCCAAGGCTTCCACGCCACCTATGAAGTTCTCCCCAGCCACACATGTGGG AACCCAGGGAGGCTGCCCAATGGCATCCAGCAGGGTTCAACCTTCAACCTCGGTGACAAGGTCCGCTACAGCTGCAACCTTGGCTTCTTC CTGGAGGGCCACGCCGTGCTCACCTGCCACGCTGGCTCTGAGAACAGCGCCACGTGGGACTTCCCCCTGCCTTCCTGCAGAGCTGATGAT GCCTGTGGTGGGACCCTGCGGGGCCAGAGTGGCATCATCTCCAGCCCCCACTTCCCCTCGGAGTACCATAACAATGCCGACTGCACATGG ACCATCCTGGCTGAGCTGGGGGACACCATCGCCCTGGTGTTTATTGACTTCCAGCTGGAGGATGGTTACGACTTTCTGGAAGTCACTGGG ACAGAAGGCTCCTCCCTCTGGTTCACCGGAGCCAGCCTCCCAGCCCCCGTTATCAGCAGCAAGAACTGGCTGCGACTGCACTTCACATCG GATGGCAACCACCGGCAGCGCGGATTCAGTGCCCAATACCAAGGTGGTTTTTCCCCATCATCGGCCACATGGGCATCTGCACATCCACAG GAGTCATTCGGGACTTCGCGGGCCCCTACTTTGTCTCAGAGGACAACATGGCCTTTGGAAAGCCTGCCAAGTACTGGAAGTTGGACCCTG CTCAGGTCTATGCTAGCGGGCCCAACGCATGGGACACGGCTGTGCACGACGCCTCTGAGGAGTACAAGCACCGCATGCACAATCTCTGCT GTGACAACTGCCACTCGCACGTGGCATTGGCCCTGAATCTGATGCGCTACAACAACAGCACCAACTGGAATATGGTGACGCTCTGCTTCT TCTGCCTGCTCTACGGGAAGTACGTCAGCGTTGGGGCCTTCGTGAAGACCTGGCTGCCCTTCATCCTTCTCCTGGGCATCATCCTCACCG >In-frame_CSMD2_ENST00000373381_chr1_34312485_-_TMEM222_ENST00000608611_chr1_27657211_+_1466nt ATGCCGCGCTCGCGGGGACGGGAGCTGGGGCGCTGCGGCTGCCCCGCGGGGAGGGCTCGCGGCGAAACCGGGATTTCGGCGCTTGTGCCG GGCGCCGGGAGCCGCTGGGGCCGCCCGCCGCCGCCAACGCCGCCGCCTCTGCTGCTGTTGCTGGGCTGTGGGTTGCTCAGCGTCTCGGCC GCCGCGGGCCAGAACTGCACGTTCCAACTGCACGGTCCCAATGGGACAGTTGAGAGCCCAGGGTTCCCATATGGCTACCCCAATTACGCC AACTGCACGTGGACCATCACCGCGGAAGAGCAGCACAGAATCCAGCTTGTGTTCCAGTCCTTTGCCCTGGAAGAGGACTTTGATGTCCTG TCGGTGTTTGATGGTCCACCCCAGCCAGAGAATCTGCGTACGAGGCTCACAGGCTTTCAGCTGCCAGCCACCATTGTTAGTGCAGCCACC ACCCTCTCTCTGCGCCTCATCAGCGACTATGCAGTCAGTGCCCAAGGCTTCCACGCCACCTATGAAGTTCTCCCCAGCCACACATGTGGG AACCCAGGGAGGCTGCCCAATGGCATCCAGCAGGGTTCAACCTTCAACCTCGGTGACAAGGTCCGCTACAGCTGCAACCTTGGCTTCTTC CTGGAGGGCCACGCCGTGCTCACCTGCCACGCTGGCTCTGAGAACAGCGCCACGTGGGACTTCCCCCTGCCTTCCTGCAGAGCTGATGAT GCCTGTGGTGGGACCCTGCGGGGCCAGAGTGGCATCATCTCCAGCCCCCACTTCCCCTCGGAGTACCATAACAATGCCGACTGCACATGG ACCATCCTGGCTGAGCTGGGGGACACCATCGCCCTGGTGTTTATTGACTTCCAGCTGGAGGATGGTTACGACTTTCTGGAAGTCACTGGG ACAGAAGGCTCCTCCCTCTGGTTCACCGGAGCCAGCCTCCCAGCCCCCGTTATCAGCAGCAAGAACTGGCTGCGACTGCACTTCACATCG GATGGCAACCACCGGCAGCGCGGATTCAGTGCCCAATACCAAGGTGGTTTTTCCCCATCATCGGCCACATGGGCATCTGCACATCCACAG GAGTCATTCGGGACTTCGCGGGCCCCTACTTTGTCTCAGAGGACAACATGGCCTTTGGAAAGCCTGCCAAGTACTGGAAGTTGGACCCTG CTCAGGTCTATGCTAGCGGGCCCAACGCATGGGACACGGCTGTGCACGACGCCTCTGAGGAGTACAAGCACCGCATGCACAATCTCTGCT GTGACAACTGCCACTCGCACGTGGCATTGGCCCTGAATCTGATGCGCTACAACAACAGCACCAACTGGAATATGGTGACGCTCTGCTTCT TCTGCCTGCTCTACGGGAAGTACGTCAGCGTTGGGGCCTTCGTGAAGACCTGGCTGCCCTTCATCCTTCTCCTGGGCATCATCCTCACCG |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_CSMD2_ENST00000373381_chr1_34312485_-_TMEM222_ENST00000374076_chr1_27657211_+_2577nt GAGAGCGCAGCGCGCCTCTCCCCGGCCGGGCGGACACTTGGTTCATTCCAGCCGCAGAAGCTCAGGGCTCCCGCGTACCGGGATTTTTTC CGAGCAGAAAAAAGCTCCAGAGCTCTCCTGACCTCCTTTCTCCTCGGCGGCGAGCGGAGCCTCTCCCTCGGCGCTGCCGGCCGCGCCATG CCGCGCTCGCGGGGACGGGAGCTGGGGCGCTGCGGCTGCCCCGCGGGGAGGGCTCGCGGCGAAACCGGGATTTCGGCGCTTGTGCCGGGC GCCGGGAGCCGCTGGGGCCGCCCGCCGCCGCCAACGCCGCCGCCTCTGCTGCTGTTGCTGGGCTGTGGGTTGCTCAGCGTCTCGGCCGCC GCGGGCCAGAACTGCACGTTCCAACTGCACGGTCCCAATGGGACAGTTGAGAGCCCAGGGTTCCCATATGGCTACCCCAATTACGCCAAC TGCACGTGGACCATCACCGCGGAAGAGCAGCACAGAATCCAGCTTGTGTTCCAGTCCTTTGCCCTGGAAGAGGACTTTGATGTCCTGTCG GTGTTTGATGGTCCACCCCAGCCAGAGAATCTGCGTACGAGGCTCACAGGCTTTCAGCTGCCAGCCACCATTGTTAGTGCAGCCACCACC CTCTCTCTGCGCCTCATCAGCGACTATGCAGTCAGTGCCCAAGGCTTCCACGCCACCTATGAAGTTCTCCCCAGCCACACATGTGGGAAC CCAGGGAGGCTGCCCAATGGCATCCAGCAGGGTTCAACCTTCAACCTCGGTGACAAGGTCCGCTACAGCTGCAACCTTGGCTTCTTCCTG GAGGGCCACGCCGTGCTCACCTGCCACGCTGGCTCTGAGAACAGCGCCACGTGGGACTTCCCCCTGCCTTCCTGCAGAGCTGATGATGCC TGTGGTGGGACCCTGCGGGGCCAGAGTGGCATCATCTCCAGCCCCCACTTCCCCTCGGAGTACCATAACAATGCCGACTGCACATGGACC ATCCTGGCTGAGCTGGGGGACACCATCGCCCTGGTGTTTATTGACTTCCAGCTGGAGGATGGTTACGACTTTCTGGAAGTCACTGGGACA GAAGGCTCCTCCCTCTGGTTCACCGGAGCCAGCCTCCCAGCCCCCGTTATCAGCAGCAAGAACTGGCTGCGACTGCACTTCACATCGGAT GGCAACCACCGGCAGCGCGGATTCAGTGCCCAATACCAAGGTGGTTTTTCCCCATCATCGGCCACATGGGCATCTGCACATCCACAGGAG TCATTCGGGACTTCGCGGGCCCCTACTTTGTCTCAGAGGACAACATGGCCTTTGGAAAGCCTGCCAAGTACTGGAAGTTGGACCCTGCTC AGGTCTATGCTAGCGGGCCCAACGCATGGGACACGGCTGTGCACGACGCCTCTGAGGAGTACAAGCACCGCATGCACAATCTCTGCTGTG ACAACTGCCACTCGCACGTGGCATTGGCCCTGAATCTGATGCGCTACAACAACAGCACCAACTGGAATATGGTGACGCTCTGCTTCTTCT GCCTGCTCTACGGGAAGTACGTCAGCGTTGGGGCCTTCGTGAAGACCTGGCTGCCCTTCATCCTTCTCCTGGGCATCATCCTCACCGTCA GCCTGGTCTTTAACCTCCGGTGATGGCTGCTCGGTGGCCCCACACCCACCAGGGTCCCGAGGAAACAGCCGCCATCCCTTTTGGTTCCAG ATTTTTTTCTCCTCACCCCAAAAGGCAGGGTTGGGCCTGCTGTTGTGGACCGGGGGTCGGGGCTGGCAGGATGGAAGGACTGAGGACCAG CATGAAGTGGGGGTTTGTTGTCTCCCTGCCTCTCAGAAGCACCCTGTCCCCTCCTCCCCAGGCCTGTGACTCCGGCCCTGGAAGCCCCTT TGTTCTTCTGTTGAAAGGCTTTGGCTTCCCGCTGTAGAGCTGCTCCCGCCACCACCTGCTGGGGTCCTGCCTCAGCCCAGTGCCCAGTAT GGGGAGAGGAGGACATTTGGGCTCACCTGTCAAGGTGGCCCTGGGACCAGAGCTGGTCCCAGCATGGGGTGCACCGGGTACACTTAACGT GTCTCTATAAGCCAAGTTGCTTCAGGACCTTCACCACTGGCCTCTAGAATGGTCCAGAGGGGCTGGCTGGGTCCCTTTGTCAGACTCCTG CCGGCAGCTGCCCTGGGGGACATGTGTGCCCATCTGGCATCCTCCAGCCCGTGCAGTCCGCTCTTCACTGTTCCACGGCCTCCCAGTGCC TCCCAGCATTGGACCCATCTCCCCCTGCAGTTTGAGGCCAGAGAGGTGAGTGGACCTGACAAGTGCCAGAGTAACCGTGTAGACAGAGCA GTGTAGACAGCACTCAGCCCCAGCCCCAGGTGTGGACCTCATGCTGGTGATGGCTCCCCTGGGTGGCCTGCCAGCACAGCCAGTGCCATC AGGGAGCTGAAGGGGCTGTCCCCCACCTAACTCCAGCTCCCCCTTCACGTTGTCACCAAGGCCCTGTGCCGCCCGCCTCGCCCCCCTGCT >In-frame_CSMD2_ENST00000373381_chr1_34312485_-_TMEM222_ENST00000608611_chr1_27657211_+_2577nt GAGAGCGCAGCGCGCCTCTCCCCGGCCGGGCGGACACTTGGTTCATTCCAGCCGCAGAAGCTCAGGGCTCCCGCGTACCGGGATTTTTTC CGAGCAGAAAAAAGCTCCAGAGCTCTCCTGACCTCCTTTCTCCTCGGCGGCGAGCGGAGCCTCTCCCTCGGCGCTGCCGGCCGCGCCATG CCGCGCTCGCGGGGACGGGAGCTGGGGCGCTGCGGCTGCCCCGCGGGGAGGGCTCGCGGCGAAACCGGGATTTCGGCGCTTGTGCCGGGC GCCGGGAGCCGCTGGGGCCGCCCGCCGCCGCCAACGCCGCCGCCTCTGCTGCTGTTGCTGGGCTGTGGGTTGCTCAGCGTCTCGGCCGCC GCGGGCCAGAACTGCACGTTCCAACTGCACGGTCCCAATGGGACAGTTGAGAGCCCAGGGTTCCCATATGGCTACCCCAATTACGCCAAC TGCACGTGGACCATCACCGCGGAAGAGCAGCACAGAATCCAGCTTGTGTTCCAGTCCTTTGCCCTGGAAGAGGACTTTGATGTCCTGTCG GTGTTTGATGGTCCACCCCAGCCAGAGAATCTGCGTACGAGGCTCACAGGCTTTCAGCTGCCAGCCACCATTGTTAGTGCAGCCACCACC CTCTCTCTGCGCCTCATCAGCGACTATGCAGTCAGTGCCCAAGGCTTCCACGCCACCTATGAAGTTCTCCCCAGCCACACATGTGGGAAC CCAGGGAGGCTGCCCAATGGCATCCAGCAGGGTTCAACCTTCAACCTCGGTGACAAGGTCCGCTACAGCTGCAACCTTGGCTTCTTCCTG GAGGGCCACGCCGTGCTCACCTGCCACGCTGGCTCTGAGAACAGCGCCACGTGGGACTTCCCCCTGCCTTCCTGCAGAGCTGATGATGCC TGTGGTGGGACCCTGCGGGGCCAGAGTGGCATCATCTCCAGCCCCCACTTCCCCTCGGAGTACCATAACAATGCCGACTGCACATGGACC ATCCTGGCTGAGCTGGGGGACACCATCGCCCTGGTGTTTATTGACTTCCAGCTGGAGGATGGTTACGACTTTCTGGAAGTCACTGGGACA GAAGGCTCCTCCCTCTGGTTCACCGGAGCCAGCCTCCCAGCCCCCGTTATCAGCAGCAAGAACTGGCTGCGACTGCACTTCACATCGGAT GGCAACCACCGGCAGCGCGGATTCAGTGCCCAATACCAAGGTGGTTTTTCCCCATCATCGGCCACATGGGCATCTGCACATCCACAGGAG TCATTCGGGACTTCGCGGGCCCCTACTTTGTCTCAGAGGACAACATGGCCTTTGGAAAGCCTGCCAAGTACTGGAAGTTGGACCCTGCTC AGGTCTATGCTAGCGGGCCCAACGCATGGGACACGGCTGTGCACGACGCCTCTGAGGAGTACAAGCACCGCATGCACAATCTCTGCTGTG ACAACTGCCACTCGCACGTGGCATTGGCCCTGAATCTGATGCGCTACAACAACAGCACCAACTGGAATATGGTGACGCTCTGCTTCTTCT GCCTGCTCTACGGGAAGTACGTCAGCGTTGGGGCCTTCGTGAAGACCTGGCTGCCCTTCATCCTTCTCCTGGGCATCATCCTCACCGTCA GCCTGGTCTTTAACCTCCGGTGATGGCTGCTCGGTGGCCCCACACCCACCAGGGTCCCGAGGAAACAGCCGCCATCCCTTTTGGTTCCAG ATTTTTTTCTCCTCACCCCAAAAGGCAGGGTTGGGCCTGCTGTTGTGGACCGGGGGTCGGGGCTGGCAGGATGGAAGGACTGAGGACCAG CATGAAGTGGGGGTTTGTTGTCTCCCTGCCTCTCAGAAGCACCCTGTCCCCTCCTCCCCAGGCCTGTGACTCCGGCCCTGGAAGCCCCTT TGTTCTTCTGTTGAAAGGCTTTGGCTTCCCGCTGTAGAGCTGCTCCCGCCACCACCTGCTGGGGTCCTGCCTCAGCCCAGTGCCCAGTAT GGGGAGAGGAGGACATTTGGGCTCACCTGTCAAGGTGGCCCTGGGACCAGAGCTGGTCCCAGCATGGGGTGCACCGGGTACACTTAACGT GTCTCTATAAGCCAAGTTGCTTCAGGACCTTCACCACTGGCCTCTAGAATGGTCCAGAGGGGCTGGCTGGGTCCCTTTGTCAGACTCCTG CCGGCAGCTGCCCTGGGGGACATGTGTGCCCATCTGGCATCCTCCAGCCCGTGCAGTCCGCTCTTCACTGTTCCACGGCCTCCCAGTGCC TCCCAGCATTGGACCCATCTCCCCCTGCAGTTTGAGGCCAGAGAGGTGAGTGGACCTGACAAGTGCCAGAGTAACCGTGTAGACAGAGCA GTGTAGACAGCACTCAGCCCCAGCCCCAGGTGTGGACCTCATGCTGGTGATGGCTCCCCTGGGTGGCCTGCCAGCACAGCCAGTGCCATC AGGGAGCTGAAGGGGCTGTCCCCCACCTAACTCCAGCTCCCCCTTCACGTTGTCACCAAGGCCCTGTGCCGCCCGCCTCGCCCCCCTGCT |
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FusionGenePPI for CSMD2_TMEM222 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
CSMD2 | TMEM222 | ABHD16A, PRSS23, MOV10, NXF1, GNAI3, TCTN2, CREB3, UPK1A, TMEM206, RTN4, LMNA |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for CSMD2_TMEM222 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for CSMD2_TMEM222 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | CSMD2 | C0011570 | Mental Depression | 1 | PSYGENET |
Hgene | CSMD2 | C0011581 | Depressive disorder | 1 | PSYGENET |
Hgene | CSMD2 | C0036341 | Schizophrenia | 1 | PSYGENET |