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Fusion gene ID: 8288 |
FusionGeneSummary for CPNE8_PRMT8 |
Fusion gene summary |
Fusion gene information | Fusion gene name: CPNE8_PRMT8 | Fusion gene ID: 8288 | Hgene | Tgene | Gene symbol | CPNE8 | PRMT8 | Gene ID | 144402 | 56341 |
Gene name | copine 8 | protein arginine methyltransferase 8 | |
Synonyms | - | HRMT1L3|HRMT1L4 | |
Cytomap | 12q12 | 12p13.32 | |
Type of gene | protein-coding | protein-coding | |
Description | copine-8copine VIII | protein arginine N-methyltransferase 8HMT1 hnRNP methyltransferase-like 3arginine methyltransferase 8heterogeneous nuclear ribonucleoprotein methyltransferase-like protein 4protein arginine N-methyltransferase 4 | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | Q86YQ8 | Q9NR22 | |
Ensembl transtripts involved in fusion gene | ENST00000331366, ENST00000538596, ENST00000546603, ENST00000360449, | ENST00000452611, ENST00000382622, ENST00000261252, | |
Fusion gene scores | * DoF score | 5 X 4 X 4=80 | 4 X 3 X 3=36 |
# samples | 5 | 4 | |
** MAII score | log2(5/80*10)=-0.678071905112638 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(4/36*10)=0.15200309344505 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: CPNE8 [Title/Abstract] AND PRMT8 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | PRMT8 | GO:0016571 | histone methylation | 16051612 |
Tgene | PRMT8 | GO:0018216 | peptidyl-arginine methylation | 16051612|18320585 |
Tgene | PRMT8 | GO:0019919 | peptidyl-arginine methylation, to asymmetrical-dimethyl arginine | 16051612 |
Tgene | PRMT8 | GO:0051260 | protein homooligomerization | 26876602 |
Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | SARC | TCGA-DX-A240-01A | CPNE8 | chr12 | 39266806 | - | PRMT8 | chr12 | 3649772 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000331366 | ENST00000452611 | CPNE8 | chr12 | 39266806 | - | PRMT8 | chr12 | 3649772 | + |
In-frame | ENST00000331366 | ENST00000382622 | CPNE8 | chr12 | 39266806 | - | PRMT8 | chr12 | 3649772 | + |
5CDS-3UTR | ENST00000331366 | ENST00000261252 | CPNE8 | chr12 | 39266806 | - | PRMT8 | chr12 | 3649772 | + |
intron-3CDS | ENST00000538596 | ENST00000452611 | CPNE8 | chr12 | 39266806 | - | PRMT8 | chr12 | 3649772 | + |
intron-3CDS | ENST00000538596 | ENST00000382622 | CPNE8 | chr12 | 39266806 | - | PRMT8 | chr12 | 3649772 | + |
intron-3UTR | ENST00000538596 | ENST00000261252 | CPNE8 | chr12 | 39266806 | - | PRMT8 | chr12 | 3649772 | + |
intron-3CDS | ENST00000546603 | ENST00000452611 | CPNE8 | chr12 | 39266806 | - | PRMT8 | chr12 | 3649772 | + |
intron-3CDS | ENST00000546603 | ENST00000382622 | CPNE8 | chr12 | 39266806 | - | PRMT8 | chr12 | 3649772 | + |
intron-3UTR | ENST00000546603 | ENST00000261252 | CPNE8 | chr12 | 39266806 | - | PRMT8 | chr12 | 3649772 | + |
In-frame | ENST00000360449 | ENST00000452611 | CPNE8 | chr12 | 39266806 | - | PRMT8 | chr12 | 3649772 | + |
In-frame | ENST00000360449 | ENST00000382622 | CPNE8 | chr12 | 39266806 | - | PRMT8 | chr12 | 3649772 | + |
5CDS-3UTR | ENST00000360449 | ENST00000261252 | CPNE8 | chr12 | 39266806 | - | PRMT8 | chr12 | 3649772 | + |
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FusionProtFeatures for CPNE8_PRMT8 |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
CPNE8 | PRMT8 |
Probable calcium-dependent phospholipid-binding proteinthat may play a role in calcium-mediated intracellular processes.{ECO:0000250|UniProtKB:Q99829}. | S-adenosyl-L-methionine-dependent and membrane-associated arginine methyltransferase that can both catalyze theformation of omega-N monomethylarginine (MMA) and asymmetricaldimethylarginine (aDMA) in proteins such as NIFK, myelin basicprotein, histone H4, H2A and H2A/H2B dimer (PubMed:16051612,PubMed:17925405, PubMed:26876602, PubMed:26529540). Able tomono- and dimethylate EWS protein; however its precise role towardEWS remains unclear as it still interacts with fully methylatedEWS (PubMed:18320585). {ECO:0000269|PubMed:16051612,ECO:0000269|PubMed:17925405, ECO:0000269|PubMed:18320585,ECO:0000269|PubMed:26529540, ECO:0000269|PubMed:26876602}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | >PRMT8 | chr12:39266806 | chr12:3649772 | ENST00000382622 | + | 0 | 10 | 73_394 | 25 | 395 | Domain | SAM-dependent MTase PRMT-type |
Tgene | >PRMT8 | chr12:39266806 | chr12:3649772 | ENST00000452611 | + | 0 | 10 | 73_394 | 16 | 386 | Domain | SAM-dependent MTase PRMT-type |
Tgene | >PRMT8 | chr12:39266806 | chr12:3649772 | ENST00000382622 | + | 0 | 10 | 29_42 | 25 | 395 | Motif | SH3-binding 1 |
Tgene | >PRMT8 | chr12:39266806 | chr12:3649772 | ENST00000382622 | + | 0 | 10 | 53_58 | 25 | 395 | Motif | SH3-binding 2 |
Tgene | >PRMT8 | chr12:39266806 | chr12:3649772 | ENST00000452611 | + | 0 | 10 | 29_42 | 16 | 386 | Motif | SH3-binding 1 |
Tgene | >PRMT8 | chr12:39266806 | chr12:3649772 | ENST00000452611 | + | 0 | 10 | 53_58 | 16 | 386 | Motif | SH3-binding 2 |
Tgene | >PRMT8 | chr12:39266806 | chr12:3649772 | ENST00000382622 | + | 0 | 10 | 119_122 | 25 | 395 | Region | S-adenosyl-L-methionine binding |
Tgene | >PRMT8 | chr12:39266806 | chr12:3649772 | ENST00000452611 | + | 0 | 10 | 119_122 | 16 | 386 | Region | S-adenosyl-L-methionine binding |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | >CPNE8 | chr12:39266806 | chr12:3649772 | ENST00000331366 | - | 3 | 20 | 10_117 | 62 | 565 | Domain | C2 1 |
Hgene | >CPNE8 | chr12:39266806 | chr12:3649772 | ENST00000331366 | - | 3 | 20 | 144_249 | 62 | 565 | Domain | C2 2 |
Hgene | >CPNE8 | chr12:39266806 | chr12:3649772 | ENST00000331366 | - | 3 | 20 | 309_510 | 62 | 565 | Domain | VWFA |
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FusionGeneSequence for CPNE8_PRMT8 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_CPNE8_ENST00000331366_chr12_39266806_-_PRMT8_ENST00000452611_chr12_3649772_+_432aa MDSRYNSTAGIGDLNQLSAAIPATRVEVSVSCRNLLDRDTFSKSDPICVLYVQGVGNKEWREVNSPPSQPPQPVVPAKPVQCVHHVSTQP SCPGRGKMSKLLNPEEMTSRDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMYHNKHVFKDKVVLDVGSGTGILSMFAAKAGAKKVFGIECS SISDYSEKIIKANHLDNIITIFKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVIFARDKWLKPGGLMFPDRAALYVVAIEDRQYKD FKIHWWENVYGFDMTCIRDVAMKEPLVDIVDPKQVVTNACLIKEVDIYTVKTEELSFTSAFCLQIQRNDYVHALVTYFNIEFTKCHKKMG >In-frame_CPNE8_ENST00000331366_chr12_39266806_-_PRMT8_ENST00000382622_chr12_3649772_+_432aa MDSRYNSTAGIGDLNQLSAAIPATRVEVSVSCRNLLDRDTFSKSDPICVLYVQGVGNKEWREVNSPPSQPPQPVVPAKPVQCVHHVSTQP SCPGRGKMSKLLNPEEMTSRDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMYHNKHVFKDKVVLDVGSGTGILSMFAAKAGAKKVFGIECS SISDYSEKIIKANHLDNIITIFKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVIFARDKWLKPGGLMFPDRAALYVVAIEDRQYKD FKIHWWENVYGFDMTCIRDVAMKEPLVDIVDPKQVVTNACLIKEVDIYTVKTEELSFTSAFCLQIQRNDYVHALVTYFNIEFTKCHKKMG >In-frame_CPNE8_ENST00000360449_chr12_39266806_-_PRMT8_ENST00000452611_chr12_3649772_+_420aa MHFKCSSLYMLYLTEVETNWINLLDRDTFSKSDPICVLYVQGVGNKEWREVNSPPSQPPQPVVPAKPVQCVHHVSTQPSCPGRGKMSKLL NPEEMTSRDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMYHNKHVFKDKVVLDVGSGTGILSMFAAKAGAKKVFGIECSSISDYSEKIIKA NHLDNIITIFKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVIFARDKWLKPGGLMFPDRAALYVVAIEDRQYKDFKIHWWENVYGF DMTCIRDVAMKEPLVDIVDPKQVVTNACLIKEVDIYTVKTEELSFTSAFCLQIQRNDYVHALVTYFNIEFTKCHKKMGFSTAPDAPYTHW >In-frame_CPNE8_ENST00000360449_chr12_39266806_-_PRMT8_ENST00000382622_chr12_3649772_+_420aa MHFKCSSLYMLYLTEVETNWINLLDRDTFSKSDPICVLYVQGVGNKEWREVNSPPSQPPQPVVPAKPVQCVHHVSTQPSCPGRGKMSKLL NPEEMTSRDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMYHNKHVFKDKVVLDVGSGTGILSMFAAKAGAKKVFGIECSSISDYSEKIIKA NHLDNIITIFKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVIFARDKWLKPGGLMFPDRAALYVVAIEDRQYKDFKIHWWENVYGF DMTCIRDVAMKEPLVDIVDPKQVVTNACLIKEVDIYTVKTEELSFTSAFCLQIQRNDYVHALVTYFNIEFTKCHKKMGFSTAPDAPYTHW |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_CPNE8_ENST00000331366_chr12_39266806_-_PRMT8_ENST00000452611_chr12_3649772_+_1296nt ATGGACAGCCGCTACAACAGCACTGCGGGCATCGGGGACTTGAACCAGCTGAGCGCTGCCATCCCGGCCACGCGGGTGGAGGTGTCCGTG TCCTGCAGAAATCTTCTTGACAGAGACACATTTTCTAAATCTGATCCAATTTGTGTCTTATATGTACAAGGAGTTGGAAATAAAGAATGG AGAGAGGTGAACAGCCCCCCCTCCCAGCCCCCCCAGCCCGTCGTCCCTGCTAAGCCCGTGCAATGCGTCCATCATGTGTCCACTCAACCC AGCTGCCCAGGACGGGGCAAGATGTCCAAGCTGCTGAACCCAGAGGAGATGACCTCGAGAGATTATTACTTCGACTCCTATGCCCACTTT GGGATCCACGAGGAAATGCTGAAGGATGAGGTGCGGACTCTCACTTACCGGAACTCCATGTACCACAACAAGCACGTGTTCAAGGACAAA GTGGTACTGGATGTGGGGAGTGGTACTGGGATCCTTTCCATGTTCGCTGCCAAGGCAGGGGCCAAGAAGGTGTTTGGGATCGAATGCTCC AGTATTTCTGACTACTCAGAGAAGATCATTAAGGCCAACCACTTGGACAACATCATCACCATATTTAAGGGTAAAGTGGAAGAGGTGGAG CTGCCTGTGGAGAAGGTGGACATCATCATCAGCGAGTGGATGGGCTACTGTCTGTTCTATGAGTCCATGCTCAACACGGTGATCTTTGCC AGGGACAAGTGGCTGAAACCTGGAGGGCTTATGTTTCCAGACCGGGCAGCTTTGTACGTGGTAGCGATTGAAGACAGACAGTACAAGGAC TTCAAAATCCACTGGTGGGAGAATGTCTATGGCTTTGACATGACCTGCATCCGGGACGTGGCCATGAAGGAGCCTCTAGTGGACATCGTG GATCCAAAGCAAGTGGTGACCAATGCCTGTTTGATAAAGGAGGTGGACATTTACACAGTGAAGACGGAAGAGCTATCGTTCACATCTGCA TTCTGCCTGCAGATACAGCGCAACGACTACGTCCACGCCCTGGTCACCTATTTTAATATTGAATTTACCAAGTGCCACAAGAAAATGGGG TTTTCCACAGCCCCTGATGCTCCCTACACCCACTGGAAGCAGACCGTCTTCTACTTGGAAGATTACCTCACTGTCCGGAGGGGGGAGGAA ATCTACGGGACCATATCCATGAAGCCAAATGCCAAAAATGTGCGAGACCTCGATTTCACAGTAGACTTGGATTTTAAGGGACAGCTGTGT >In-frame_CPNE8_ENST00000331366_chr12_39266806_-_PRMT8_ENST00000382622_chr12_3649772_+_1296nt ATGGACAGCCGCTACAACAGCACTGCGGGCATCGGGGACTTGAACCAGCTGAGCGCTGCCATCCCGGCCACGCGGGTGGAGGTGTCCGTG TCCTGCAGAAATCTTCTTGACAGAGACACATTTTCTAAATCTGATCCAATTTGTGTCTTATATGTACAAGGAGTTGGAAATAAAGAATGG AGAGAGGTGAACAGCCCCCCCTCCCAGCCCCCCCAGCCCGTCGTCCCTGCTAAGCCCGTGCAATGCGTCCATCATGTGTCCACTCAACCC AGCTGCCCAGGACGGGGCAAGATGTCCAAGCTGCTGAACCCAGAGGAGATGACCTCGAGAGATTATTACTTCGACTCCTATGCCCACTTT GGGATCCACGAGGAAATGCTGAAGGATGAGGTGCGGACTCTCACTTACCGGAACTCCATGTACCACAACAAGCACGTGTTCAAGGACAAA GTGGTACTGGATGTGGGGAGTGGTACTGGGATCCTTTCCATGTTCGCTGCCAAGGCAGGGGCCAAGAAGGTGTTTGGGATCGAATGCTCC AGTATTTCTGACTACTCAGAGAAGATCATTAAGGCCAACCACTTGGACAACATCATCACCATATTTAAGGGTAAAGTGGAAGAGGTGGAG CTGCCTGTGGAGAAGGTGGACATCATCATCAGCGAGTGGATGGGCTACTGTCTGTTCTATGAGTCCATGCTCAACACGGTGATCTTTGCC AGGGACAAGTGGCTGAAACCTGGAGGGCTTATGTTTCCAGACCGGGCAGCTTTGTACGTGGTAGCGATTGAAGACAGACAGTACAAGGAC TTCAAAATCCACTGGTGGGAGAATGTCTATGGCTTTGACATGACCTGCATCCGGGACGTGGCCATGAAGGAGCCTCTAGTGGACATCGTG GATCCAAAGCAAGTGGTGACCAATGCCTGTTTGATAAAGGAGGTGGACATTTACACAGTGAAGACGGAAGAGCTATCGTTCACATCTGCA TTCTGCCTGCAGATACAGCGCAACGACTACGTCCACGCCCTGGTCACCTATTTTAATATTGAATTTACCAAGTGCCACAAGAAAATGGGG TTTTCCACAGCCCCTGATGCTCCCTACACCCACTGGAAGCAGACCGTCTTCTACTTGGAAGATTACCTCACTGTCCGGAGGGGGGAGGAA ATCTACGGGACCATATCCATGAAGCCAAATGCCAAAAATGTGCGAGACCTCGATTTCACAGTAGACTTGGATTTTAAGGGACAGCTGTGT >In-frame_CPNE8_ENST00000360449_chr12_39266806_-_PRMT8_ENST00000452611_chr12_3649772_+_1260nt ATGCACTTTAAGTGCAGTTCATTATATATGTTATACCTCACTGAAGTGGAAACAAATTGGATAAATCTTCTTGACAGAGACACATTTTCT AAATCTGATCCAATTTGTGTCTTATATGTACAAGGAGTTGGAAATAAAGAATGGAGAGAGGTGAACAGCCCCCCCTCCCAGCCCCCCCAG CCCGTCGTCCCTGCTAAGCCCGTGCAATGCGTCCATCATGTGTCCACTCAACCCAGCTGCCCAGGACGGGGCAAGATGTCCAAGCTGCTG AACCCAGAGGAGATGACCTCGAGAGATTATTACTTCGACTCCTATGCCCACTTTGGGATCCACGAGGAAATGCTGAAGGATGAGGTGCGG ACTCTCACTTACCGGAACTCCATGTACCACAACAAGCACGTGTTCAAGGACAAAGTGGTACTGGATGTGGGGAGTGGTACTGGGATCCTT TCCATGTTCGCTGCCAAGGCAGGGGCCAAGAAGGTGTTTGGGATCGAATGCTCCAGTATTTCTGACTACTCAGAGAAGATCATTAAGGCC AACCACTTGGACAACATCATCACCATATTTAAGGGTAAAGTGGAAGAGGTGGAGCTGCCTGTGGAGAAGGTGGACATCATCATCAGCGAG TGGATGGGCTACTGTCTGTTCTATGAGTCCATGCTCAACACGGTGATCTTTGCCAGGGACAAGTGGCTGAAACCTGGAGGGCTTATGTTT CCAGACCGGGCAGCTTTGTACGTGGTAGCGATTGAAGACAGACAGTACAAGGACTTCAAAATCCACTGGTGGGAGAATGTCTATGGCTTT GACATGACCTGCATCCGGGACGTGGCCATGAAGGAGCCTCTAGTGGACATCGTGGATCCAAAGCAAGTGGTGACCAATGCCTGTTTGATA AAGGAGGTGGACATTTACACAGTGAAGACGGAAGAGCTATCGTTCACATCTGCATTCTGCCTGCAGATACAGCGCAACGACTACGTCCAC GCCCTGGTCACCTATTTTAATATTGAATTTACCAAGTGCCACAAGAAAATGGGGTTTTCCACAGCCCCTGATGCTCCCTACACCCACTGG AAGCAGACCGTCTTCTACTTGGAAGATTACCTCACTGTCCGGAGGGGGGAGGAAATCTACGGGACCATATCCATGAAGCCAAATGCCAAA AATGTGCGAGACCTCGATTTCACAGTAGACTTGGATTTTAAGGGACAGCTGTGTGAAACATCTGTATCTAATGACTACAAAATGCGTTAG >In-frame_CPNE8_ENST00000360449_chr12_39266806_-_PRMT8_ENST00000382622_chr12_3649772_+_1260nt ATGCACTTTAAGTGCAGTTCATTATATATGTTATACCTCACTGAAGTGGAAACAAATTGGATAAATCTTCTTGACAGAGACACATTTTCT AAATCTGATCCAATTTGTGTCTTATATGTACAAGGAGTTGGAAATAAAGAATGGAGAGAGGTGAACAGCCCCCCCTCCCAGCCCCCCCAG CCCGTCGTCCCTGCTAAGCCCGTGCAATGCGTCCATCATGTGTCCACTCAACCCAGCTGCCCAGGACGGGGCAAGATGTCCAAGCTGCTG AACCCAGAGGAGATGACCTCGAGAGATTATTACTTCGACTCCTATGCCCACTTTGGGATCCACGAGGAAATGCTGAAGGATGAGGTGCGG ACTCTCACTTACCGGAACTCCATGTACCACAACAAGCACGTGTTCAAGGACAAAGTGGTACTGGATGTGGGGAGTGGTACTGGGATCCTT TCCATGTTCGCTGCCAAGGCAGGGGCCAAGAAGGTGTTTGGGATCGAATGCTCCAGTATTTCTGACTACTCAGAGAAGATCATTAAGGCC AACCACTTGGACAACATCATCACCATATTTAAGGGTAAAGTGGAAGAGGTGGAGCTGCCTGTGGAGAAGGTGGACATCATCATCAGCGAG TGGATGGGCTACTGTCTGTTCTATGAGTCCATGCTCAACACGGTGATCTTTGCCAGGGACAAGTGGCTGAAACCTGGAGGGCTTATGTTT CCAGACCGGGCAGCTTTGTACGTGGTAGCGATTGAAGACAGACAGTACAAGGACTTCAAAATCCACTGGTGGGAGAATGTCTATGGCTTT GACATGACCTGCATCCGGGACGTGGCCATGAAGGAGCCTCTAGTGGACATCGTGGATCCAAAGCAAGTGGTGACCAATGCCTGTTTGATA AAGGAGGTGGACATTTACACAGTGAAGACGGAAGAGCTATCGTTCACATCTGCATTCTGCCTGCAGATACAGCGCAACGACTACGTCCAC GCCCTGGTCACCTATTTTAATATTGAATTTACCAAGTGCCACAAGAAAATGGGGTTTTCCACAGCCCCTGATGCTCCCTACACCCACTGG AAGCAGACCGTCTTCTACTTGGAAGATTACCTCACTGTCCGGAGGGGGGAGGAAATCTACGGGACCATATCCATGAAGCCAAATGCCAAA AATGTGCGAGACCTCGATTTCACAGTAGACTTGGATTTTAAGGGACAGCTGTGTGAAACATCTGTATCTAATGACTACAAAATGCGTTAG |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_CPNE8_ENST00000331366_chr12_39266806_-_PRMT8_ENST00000452611_chr12_3649772_+_1393nt ACCCTCAACCCCCATCCCCGCCTGACGGGAGCTAGCCCTCAGTCCGCCCGAGCTGTGGTTGTGGGCGCCGGACAAGTCCAAGGCGCCTCC TCCCAATATGGACAGCCGCTACAACAGCACTGCGGGCATCGGGGACTTGAACCAGCTGAGCGCTGCCATCCCGGCCACGCGGGTGGAGGT GTCCGTGTCCTGCAGAAATCTTCTTGACAGAGACACATTTTCTAAATCTGATCCAATTTGTGTCTTATATGTACAAGGAGTTGGAAATAA AGAATGGAGAGAGGTGAACAGCCCCCCCTCCCAGCCCCCCCAGCCCGTCGTCCCTGCTAAGCCCGTGCAATGCGTCCATCATGTGTCCAC TCAACCCAGCTGCCCAGGACGGGGCAAGATGTCCAAGCTGCTGAACCCAGAGGAGATGACCTCGAGAGATTATTACTTCGACTCCTATGC CCACTTTGGGATCCACGAGGAAATGCTGAAGGATGAGGTGCGGACTCTCACTTACCGGAACTCCATGTACCACAACAAGCACGTGTTCAA GGACAAAGTGGTACTGGATGTGGGGAGTGGTACTGGGATCCTTTCCATGTTCGCTGCCAAGGCAGGGGCCAAGAAGGTGTTTGGGATCGA ATGCTCCAGTATTTCTGACTACTCAGAGAAGATCATTAAGGCCAACCACTTGGACAACATCATCACCATATTTAAGGGTAAAGTGGAAGA GGTGGAGCTGCCTGTGGAGAAGGTGGACATCATCATCAGCGAGTGGATGGGCTACTGTCTGTTCTATGAGTCCATGCTCAACACGGTGAT CTTTGCCAGGGACAAGTGGCTGAAACCTGGAGGGCTTATGTTTCCAGACCGGGCAGCTTTGTACGTGGTAGCGATTGAAGACAGACAGTA CAAGGACTTCAAAATCCACTGGTGGGAGAATGTCTATGGCTTTGACATGACCTGCATCCGGGACGTGGCCATGAAGGAGCCTCTAGTGGA CATCGTGGATCCAAAGCAAGTGGTGACCAATGCCTGTTTGATAAAGGAGGTGGACATTTACACAGTGAAGACGGAAGAGCTATCGTTCAC ATCTGCATTCTGCCTGCAGATACAGCGCAACGACTACGTCCACGCCCTGGTCACCTATTTTAATATTGAATTTACCAAGTGCCACAAGAA AATGGGGTTTTCCACAGCCCCTGATGCTCCCTACACCCACTGGAAGCAGACCGTCTTCTACTTGGAAGATTACCTCACTGTCCGGAGGGG GGAGGAAATCTACGGGACCATATCCATGAAGCCAAATGCCAAAAATGTGCGAGACCTCGATTTCACAGTAGACTTGGATTTTAAGGGACA >In-frame_CPNE8_ENST00000331366_chr12_39266806_-_PRMT8_ENST00000382622_chr12_3649772_+_2184nt ACCCTCAACCCCCATCCCCGCCTGACGGGAGCTAGCCCTCAGTCCGCCCGAGCTGTGGTTGTGGGCGCCGGACAAGTCCAAGGCGCCTCC TCCCAATATGGACAGCCGCTACAACAGCACTGCGGGCATCGGGGACTTGAACCAGCTGAGCGCTGCCATCCCGGCCACGCGGGTGGAGGT GTCCGTGTCCTGCAGAAATCTTCTTGACAGAGACACATTTTCTAAATCTGATCCAATTTGTGTCTTATATGTACAAGGAGTTGGAAATAA AGAATGGAGAGAGGTGAACAGCCCCCCCTCCCAGCCCCCCCAGCCCGTCGTCCCTGCTAAGCCCGTGCAATGCGTCCATCATGTGTCCAC TCAACCCAGCTGCCCAGGACGGGGCAAGATGTCCAAGCTGCTGAACCCAGAGGAGATGACCTCGAGAGATTATTACTTCGACTCCTATGC CCACTTTGGGATCCACGAGGAAATGCTGAAGGATGAGGTGCGGACTCTCACTTACCGGAACTCCATGTACCACAACAAGCACGTGTTCAA GGACAAAGTGGTACTGGATGTGGGGAGTGGTACTGGGATCCTTTCCATGTTCGCTGCCAAGGCAGGGGCCAAGAAGGTGTTTGGGATCGA ATGCTCCAGTATTTCTGACTACTCAGAGAAGATCATTAAGGCCAACCACTTGGACAACATCATCACCATATTTAAGGGTAAAGTGGAAGA GGTGGAGCTGCCTGTGGAGAAGGTGGACATCATCATCAGCGAGTGGATGGGCTACTGTCTGTTCTATGAGTCCATGCTCAACACGGTGAT CTTTGCCAGGGACAAGTGGCTGAAACCTGGAGGGCTTATGTTTCCAGACCGGGCAGCTTTGTACGTGGTAGCGATTGAAGACAGACAGTA CAAGGACTTCAAAATCCACTGGTGGGAGAATGTCTATGGCTTTGACATGACCTGCATCCGGGACGTGGCCATGAAGGAGCCTCTAGTGGA CATCGTGGATCCAAAGCAAGTGGTGACCAATGCCTGTTTGATAAAGGAGGTGGACATTTACACAGTGAAGACGGAAGAGCTATCGTTCAC ATCTGCATTCTGCCTGCAGATACAGCGCAACGACTACGTCCACGCCCTGGTCACCTATTTTAATATTGAATTTACCAAGTGCCACAAGAA AATGGGGTTTTCCACAGCCCCTGATGCTCCCTACACCCACTGGAAGCAGACCGTCTTCTACTTGGAAGATTACCTCACTGTCCGGAGGGG GGAGGAAATCTACGGGACCATATCCATGAAGCCAAATGCCAAAAATGTGCGAGACCTCGATTTCACAGTAGACTTGGATTTTAAGGGACA GCTGTGTGAAACATCTGTATCTAATGACTACAAAATGCGTTAGCACACGTGGGAAGCTGCAGAGAGCAACGAGAAAAGGAACTCTCACCT CGATCTGCCGTGCCGTCCCAAAGAATACCGTTTGCAGGACTACACACTTGAAAACCAGAGTTTTCAACTCTGCCTTGAAGATTGGTGAAC TCCCCAGGGCTCCCGTGGGCTCTGCCACTGGACAGAAGGCCTCCAGCTCCTCCGCTCTGCCCTGGTAGCCCTTCACGAAGGCTTTGTGTT GCCAACAAAGAGCGACCTGGCGTGCTGTGGCTGGGCCCCGAGGGTGGAAACGTATTCGCGTCTCCCCGTCTCCTCCTTAACTGTGACTCT CCGGGTCTTCTGAGTTTTGCATGCTGCGGGTGTCTAGGACAGATTGCTTCCACTAGAACCTGGAGACATAGCATCTTTGATAGCATAAGC CAGATTATCTGTGTGTGCGGTGGTGTGCGTGTGCGTGCATGTGTGAATGTGAGCAGCATAGTTGATATTTACCCACAAACACCTGTATAT GCGTGCATATACAACCAAGTGGGTAGACCTAGGTGTTCTCTCAGAGGGGTGTGTGTGTGTGTGCGTGCGCGTGTGCCTAGAATATATATT ACTCTCAGAGGAGATTCTGTTGCTTTTGAATAGGAATTTGTTTTGTGATTAGTTCGCCCCTTCCCCACCCCTTACCAGATGTTAAGCAGC TATGAAACATTCTCTGTACTAGTTCTGGTCTCCTTTTGACTGGACTGTGGCTCTGAACCTTGAGCATAGTACCACGGACTCCGTGGGCGC >In-frame_CPNE8_ENST00000360449_chr12_39266806_-_PRMT8_ENST00000452611_chr12_3649772_+_1310nt GGTGATGGCTTCACAGGGAGATACATGAGTCAACATTTATCGAATGATGGATGCACTTTAAGTGCAGTTCATTATATATGTTATACCTCA CTGAAGTGGAAACAAATTGGATAAATCTTCTTGACAGAGACACATTTTCTAAATCTGATCCAATTTGTGTCTTATATGTACAAGGAGTTG GAAATAAAGAATGGAGAGAGGTGAACAGCCCCCCCTCCCAGCCCCCCCAGCCCGTCGTCCCTGCTAAGCCCGTGCAATGCGTCCATCATG TGTCCACTCAACCCAGCTGCCCAGGACGGGGCAAGATGTCCAAGCTGCTGAACCCAGAGGAGATGACCTCGAGAGATTATTACTTCGACT CCTATGCCCACTTTGGGATCCACGAGGAAATGCTGAAGGATGAGGTGCGGACTCTCACTTACCGGAACTCCATGTACCACAACAAGCACG TGTTCAAGGACAAAGTGGTACTGGATGTGGGGAGTGGTACTGGGATCCTTTCCATGTTCGCTGCCAAGGCAGGGGCCAAGAAGGTGTTTG GGATCGAATGCTCCAGTATTTCTGACTACTCAGAGAAGATCATTAAGGCCAACCACTTGGACAACATCATCACCATATTTAAGGGTAAAG TGGAAGAGGTGGAGCTGCCTGTGGAGAAGGTGGACATCATCATCAGCGAGTGGATGGGCTACTGTCTGTTCTATGAGTCCATGCTCAACA CGGTGATCTTTGCCAGGGACAAGTGGCTGAAACCTGGAGGGCTTATGTTTCCAGACCGGGCAGCTTTGTACGTGGTAGCGATTGAAGACA GACAGTACAAGGACTTCAAAATCCACTGGTGGGAGAATGTCTATGGCTTTGACATGACCTGCATCCGGGACGTGGCCATGAAGGAGCCTC TAGTGGACATCGTGGATCCAAAGCAAGTGGTGACCAATGCCTGTTTGATAAAGGAGGTGGACATTTACACAGTGAAGACGGAAGAGCTAT CGTTCACATCTGCATTCTGCCTGCAGATACAGCGCAACGACTACGTCCACGCCCTGGTCACCTATTTTAATATTGAATTTACCAAGTGCC ACAAGAAAATGGGGTTTTCCACAGCCCCTGATGCTCCCTACACCCACTGGAAGCAGACCGTCTTCTACTTGGAAGATTACCTCACTGTCC GGAGGGGGGAGGAAATCTACGGGACCATATCCATGAAGCCAAATGCCAAAAATGTGCGAGACCTCGATTTCACAGTAGACTTGGATTTTA >In-frame_CPNE8_ENST00000360449_chr12_39266806_-_PRMT8_ENST00000382622_chr12_3649772_+_2101nt GGTGATGGCTTCACAGGGAGATACATGAGTCAACATTTATCGAATGATGGATGCACTTTAAGTGCAGTTCATTATATATGTTATACCTCA CTGAAGTGGAAACAAATTGGATAAATCTTCTTGACAGAGACACATTTTCTAAATCTGATCCAATTTGTGTCTTATATGTACAAGGAGTTG GAAATAAAGAATGGAGAGAGGTGAACAGCCCCCCCTCCCAGCCCCCCCAGCCCGTCGTCCCTGCTAAGCCCGTGCAATGCGTCCATCATG TGTCCACTCAACCCAGCTGCCCAGGACGGGGCAAGATGTCCAAGCTGCTGAACCCAGAGGAGATGACCTCGAGAGATTATTACTTCGACT CCTATGCCCACTTTGGGATCCACGAGGAAATGCTGAAGGATGAGGTGCGGACTCTCACTTACCGGAACTCCATGTACCACAACAAGCACG TGTTCAAGGACAAAGTGGTACTGGATGTGGGGAGTGGTACTGGGATCCTTTCCATGTTCGCTGCCAAGGCAGGGGCCAAGAAGGTGTTTG GGATCGAATGCTCCAGTATTTCTGACTACTCAGAGAAGATCATTAAGGCCAACCACTTGGACAACATCATCACCATATTTAAGGGTAAAG TGGAAGAGGTGGAGCTGCCTGTGGAGAAGGTGGACATCATCATCAGCGAGTGGATGGGCTACTGTCTGTTCTATGAGTCCATGCTCAACA CGGTGATCTTTGCCAGGGACAAGTGGCTGAAACCTGGAGGGCTTATGTTTCCAGACCGGGCAGCTTTGTACGTGGTAGCGATTGAAGACA GACAGTACAAGGACTTCAAAATCCACTGGTGGGAGAATGTCTATGGCTTTGACATGACCTGCATCCGGGACGTGGCCATGAAGGAGCCTC TAGTGGACATCGTGGATCCAAAGCAAGTGGTGACCAATGCCTGTTTGATAAAGGAGGTGGACATTTACACAGTGAAGACGGAAGAGCTAT CGTTCACATCTGCATTCTGCCTGCAGATACAGCGCAACGACTACGTCCACGCCCTGGTCACCTATTTTAATATTGAATTTACCAAGTGCC ACAAGAAAATGGGGTTTTCCACAGCCCCTGATGCTCCCTACACCCACTGGAAGCAGACCGTCTTCTACTTGGAAGATTACCTCACTGTCC GGAGGGGGGAGGAAATCTACGGGACCATATCCATGAAGCCAAATGCCAAAAATGTGCGAGACCTCGATTTCACAGTAGACTTGGATTTTA AGGGACAGCTGTGTGAAACATCTGTATCTAATGACTACAAAATGCGTTAGCACACGTGGGAAGCTGCAGAGAGCAACGAGAAAAGGAACT CTCACCTCGATCTGCCGTGCCGTCCCAAAGAATACCGTTTGCAGGACTACACACTTGAAAACCAGAGTTTTCAACTCTGCCTTGAAGATT GGTGAACTCCCCAGGGCTCCCGTGGGCTCTGCCACTGGACAGAAGGCCTCCAGCTCCTCCGCTCTGCCCTGGTAGCCCTTCACGAAGGCT TTGTGTTGCCAACAAAGAGCGACCTGGCGTGCTGTGGCTGGGCCCCGAGGGTGGAAACGTATTCGCGTCTCCCCGTCTCCTCCTTAACTG TGACTCTCCGGGTCTTCTGAGTTTTGCATGCTGCGGGTGTCTAGGACAGATTGCTTCCACTAGAACCTGGAGACATAGCATCTTTGATAG CATAAGCCAGATTATCTGTGTGTGCGGTGGTGTGCGTGTGCGTGCATGTGTGAATGTGAGCAGCATAGTTGATATTTACCCACAAACACC TGTATATGCGTGCATATACAACCAAGTGGGTAGACCTAGGTGTTCTCTCAGAGGGGTGTGTGTGTGTGTGCGTGCGCGTGTGCCTAGAAT ATATATTACTCTCAGAGGAGATTCTGTTGCTTTTGAATAGGAATTTGTTTTGTGATTAGTTCGCCCCTTCCCCACCCCTTACCAGATGTT AAGCAGCTATGAAACATTCTCTGTACTAGTTCTGGTCTCCTTTTGACTGGACTGTGGCTCTGAACCTTGAGCATAGTACCACGGACTCCG |
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FusionGenePPI for CPNE8_PRMT8 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
CPNE8 | ELAVL1, ARRB1, CYSRT1, LAMTOR2, SHMT2, MOV10, NXF1, CCDC8, CSPP1, SLC25A41, TMEM185A, EIF3I, NDUFS1, TMEM17, CTDSPL2, MCM2 | PRMT8 | PRMT8, HNRNPA1, COIL, SYNCRIP, TAF15, PRMT1, HIST1H4A, GPATCH2L, CEP162, OFCC1, PPARA, SERBP1, VHL, DCAF8, ZNF451, EWSR1, NEFM, VIM, INA, HNRNPU, FAM120A, DHX9, HNRNPR, BCLAF1, THRAP3, LSM14A, PRRC2C, HNRNPUL2, CHTOP, FBXW11, SCAF11, ALYREF, ANGEL2, HNRNPK, GIMAP2, SPDEF, TIGD7, ZSCAN1 |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for CPNE8_PRMT8 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for CPNE8_PRMT8 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |