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Fusion gene ID: 8139 |
FusionGeneSummary for CORO2B_SLC22A23 |
Fusion gene summary |
Fusion gene information | Fusion gene name: CORO2B_SLC22A23 | Fusion gene ID: 8139 | Hgene | Tgene | Gene symbol | CORO2B | SLC22A23 | Gene ID | 10391 | 63027 |
Gene name | coronin 2B | solute carrier family 22 member 23 | |
Synonyms | CLIPINC | C6orf85 | |
Cytomap | 15q23 | 6p25.2 | |
Type of gene | protein-coding | protein-coding | |
Description | coronin-2Bclipin Ccoronin, actin binding protein, 2Bcoronin-like protein C | solute carrier family 22 member 23ion transporter protein | |
Modification date | 20180519 | 20180522 | |
UniProtAcc | Q9UQ03 | A1A5C7 | |
Ensembl transtripts involved in fusion gene | ENST00000261861, ENST00000566799, ENST00000540068, ENST00000543950, | ENST00000436008, ENST00000406686, ENST00000380302, ENST00000490273, ENST00000380298, ENST00000433689, | |
Fusion gene scores | * DoF score | 2 X 2 X 2=8 | 4 X 3 X 4=48 |
# samples | 2 | 4 | |
** MAII score | log2(2/8*10)=1.32192809488736 | log2(4/48*10)=-0.263034405833794 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: CORO2B [Title/Abstract] AND SLC22A23 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | SKCM | TCGA-YD-A89C-06A | CORO2B | chr15 | 68871616 | + | SLC22A23 | chr6 | 3416089 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5UTR-3CDS | ENST00000261861 | ENST00000436008 | CORO2B | chr15 | 68871616 | + | SLC22A23 | chr6 | 3416089 | - |
5UTR-3CDS | ENST00000261861 | ENST00000406686 | CORO2B | chr15 | 68871616 | + | SLC22A23 | chr6 | 3416089 | - |
5UTR-5UTR | ENST00000261861 | ENST00000380302 | CORO2B | chr15 | 68871616 | + | SLC22A23 | chr6 | 3416089 | - |
5UTR-5UTR | ENST00000261861 | ENST00000490273 | CORO2B | chr15 | 68871616 | + | SLC22A23 | chr6 | 3416089 | - |
5UTR-5UTR | ENST00000261861 | ENST00000380298 | CORO2B | chr15 | 68871616 | + | SLC22A23 | chr6 | 3416089 | - |
5UTR-intron | ENST00000261861 | ENST00000433689 | CORO2B | chr15 | 68871616 | + | SLC22A23 | chr6 | 3416089 | - |
In-frame | ENST00000566799 | ENST00000436008 | CORO2B | chr15 | 68871616 | + | SLC22A23 | chr6 | 3416089 | - |
In-frame | ENST00000566799 | ENST00000406686 | CORO2B | chr15 | 68871616 | + | SLC22A23 | chr6 | 3416089 | - |
5CDS-5UTR | ENST00000566799 | ENST00000380302 | CORO2B | chr15 | 68871616 | + | SLC22A23 | chr6 | 3416089 | - |
5CDS-5UTR | ENST00000566799 | ENST00000490273 | CORO2B | chr15 | 68871616 | + | SLC22A23 | chr6 | 3416089 | - |
5CDS-5UTR | ENST00000566799 | ENST00000380298 | CORO2B | chr15 | 68871616 | + | SLC22A23 | chr6 | 3416089 | - |
5CDS-intron | ENST00000566799 | ENST00000433689 | CORO2B | chr15 | 68871616 | + | SLC22A23 | chr6 | 3416089 | - |
intron-3CDS | ENST00000540068 | ENST00000436008 | CORO2B | chr15 | 68871616 | + | SLC22A23 | chr6 | 3416089 | - |
intron-3CDS | ENST00000540068 | ENST00000406686 | CORO2B | chr15 | 68871616 | + | SLC22A23 | chr6 | 3416089 | - |
intron-5UTR | ENST00000540068 | ENST00000380302 | CORO2B | chr15 | 68871616 | + | SLC22A23 | chr6 | 3416089 | - |
intron-5UTR | ENST00000540068 | ENST00000490273 | CORO2B | chr15 | 68871616 | + | SLC22A23 | chr6 | 3416089 | - |
intron-5UTR | ENST00000540068 | ENST00000380298 | CORO2B | chr15 | 68871616 | + | SLC22A23 | chr6 | 3416089 | - |
intron-intron | ENST00000540068 | ENST00000433689 | CORO2B | chr15 | 68871616 | + | SLC22A23 | chr6 | 3416089 | - |
intron-3CDS | ENST00000543950 | ENST00000436008 | CORO2B | chr15 | 68871616 | + | SLC22A23 | chr6 | 3416089 | - |
intron-3CDS | ENST00000543950 | ENST00000406686 | CORO2B | chr15 | 68871616 | + | SLC22A23 | chr6 | 3416089 | - |
intron-5UTR | ENST00000543950 | ENST00000380302 | CORO2B | chr15 | 68871616 | + | SLC22A23 | chr6 | 3416089 | - |
intron-5UTR | ENST00000543950 | ENST00000490273 | CORO2B | chr15 | 68871616 | + | SLC22A23 | chr6 | 3416089 | - |
intron-5UTR | ENST00000543950 | ENST00000380298 | CORO2B | chr15 | 68871616 | + | SLC22A23 | chr6 | 3416089 | - |
intron-intron | ENST00000543950 | ENST00000433689 | CORO2B | chr15 | 68871616 | + | SLC22A23 | chr6 | 3416089 | - |
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FusionProtFeatures for CORO2B_SLC22A23 |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
CORO2B | SLC22A23 |
May play a role in the reorganization of neuronal actinstructure. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for CORO2B_SLC22A23 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_CORO2B_ENST00000566799_chr15_68871616_+_SLC22A23_ENST00000436008_chr6_3416089_-_482aa MTVTKWDLVCDNAWKVHIAKFSLLVGLIFGYLITGCIADWVGRRPVLLFSIIFILIFGLTVALSVNVTMFSTLRFFEGFCLAGIILTLYA LRIELCPPGKRFMITMVASFVAMAGQFLMPGLAALCRDWQVLQALIICPFLLMLLYWSIFPESLRWLMATQQFESAKRLILHFTQKNRMN PEGDIKGVIPELEKELSRRPKKVCIVKVVGTRNLWKNIVVLCVNSLTGYGIHHCFARSMMGHEVKVPLLENFYADYYTTASIALVSCLAM CVVVRFLGRRGGLLLFMILTALASLLQLGLLNLIGKYSQHPDSELQLKLAVGMSDSVKDKFSIAFSIVGMFASHAVGSLSVFFCAEITPT VIRCGGLGLVLASAGFGMLTAPIIELHNQKGYFLHHIIFACCTLICIICILLLPESRDQNLPENISNGEHYTRQPLLPHKKGEQPLLLTN >In-frame_CORO2B_ENST00000566799_chr15_68871616_+_SLC22A23_ENST00000406686_chr6_3416089_-_474aa MTVTKWDLVCDNAWKVHIAKFSLLVGLIFGYLITGCIADWVGRRPVLLFSIIFILIFGLTVALSVNVTMFSTLRFFEGFCLAGIILTLYA LRIELCPPGKRFMITMVASFVAMAGQFLMPGLAALCRDWQVLQALIICPFLLMLLYWSIFPESLRWLMATQQFESAKRLILHFTQKNRMN PEGDIKGVIPELEKELSRRPKKVCIVKVVGTRNLWKNIVVLCVNSLTGYGIHHCFARSMMGHEVKVPLLENFYADYYTTASIALVSCLAM CVVVRFLGRRGGLLLFMILTALASLLQLGLLNLIGKYSQHPDSGMSDSVKDKFSIAFSIVGMFASHAVGSLSVFFCAEITPTVIRCGGLG LVLASAGFGMLTAPIIELHNQKGYFLHHIIFACCTLICIICILLLPESRDQNLPENISNGEHYTRQPLLPHKKGEQPLLLTNAELKDYSG |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_CORO2B_ENST00000566799_chr15_68871616_+_SLC22A23_ENST00000436008_chr6_3416089_-_1446nt ATGACTGTCACAAAGTGGGATCTTGTGTGTGATAATGCCTGGAAGGTCCATATCGCTAAGTTCTCCTTACTGGTTGGATTAATCTTTGGC TACCTAATAACTGGATGCATTGCTGACTGGGTCGGCCGGCGGCCTGTGCTGCTGTTTTCCATCATCTTCATTCTGATCTTTGGACTGACT GTGGCACTGTCAGTGAATGTGACAATGTTCAGCACACTCAGGTTCTTTGAAGGATTTTGCCTGGCTGGAATCATTCTCACCTTGTATGCT TTACGAATAGAGCTGTGCCCCCCTGGAAAACGGTTCATGATTACGATGGTGGCGAGCTTCGTGGCCATGGCGGGCCAGTTCCTCATGCCT GGGCTAGCCGCCCTGTGCCGGGATTGGCAGGTGCTGCAGGCCCTCATCATCTGCCCCTTCCTGCTCATGCTGCTCTACTGGTCGATATTC CCCGAGTCCCTCCGGTGGCTAATGGCCACCCAGCAGTTTGAGTCTGCAAAGAGGCTGATCCTCCACTTCACACAGAAGAATCGCATGAAC CCTGAGGGCGACATCAAGGGTGTGATACCAGAGCTGGAGAAAGAGCTTTCCCGGAGGCCCAAGAAGGTCTGCATCGTGAAGGTGGTGGGG ACACGGAACCTGTGGAAGAACATTGTGGTCCTGTGTGTGAACTCGCTGACGGGGTACGGGATCCACCACTGCTTTGCCAGGAGCATGATG GGCCACGAGGTGAAGGTGCCGCTCCTGGAGAACTTCTATGCTGACTACTATACCACGGCCAGCATCGCGCTGGTGTCCTGCCTGGCCATG TGCGTGGTGGTCCGATTCCTCGGGCGCAGGGGAGGGCTGCTGCTCTTCATGATCCTCACCGCCCTGGCCTCACTCCTGCAGCTCGGCCTC CTCAACCTGATTGGAAAGTACAGCCAGCACCCAGACTCAGAACTGCAGCTGAAGTTGGCCGTAGGGATGAGTGACAGCGTCAAGGACAAA TTTTCCATCGCGTTTTCCATCGTGGGCATGTTTGCCTCCCATGCGGTGGGGAGCCTCAGCGTGTTCTTCTGTGCGGAGATCACCCCGACG GTGATAAGGTGTGGCGGGCTGGGGCTGGTGCTGGCCAGCGCGGGCTTCGGCATGCTGACGGCACCCATCATCGAGCTGCACAACCAGAAA GGCTACTTCCTGCACCACATCATCTTTGCCTGCTGCACGCTCATCTGCATCATCTGCATCCTCCTGCTGCCCGAGAGCAGGGACCAGAAC CTGCCTGAGAACATTTCTAACGGGGAGCACTACACGCGCCAGCCGCTGCTGCCGCACAAGAAGGGGGAGCAGCCACTGCTGCTCACCAAC GCCGAGCTCAAGGACTACTCGGGCCTCCACGATGCCGCAGCCGCGGGTGACACACTGCCCGAGGGTGCCACGGCCAACGGCATGAAGGCC >In-frame_CORO2B_ENST00000566799_chr15_68871616_+_SLC22A23_ENST00000406686_chr6_3416089_-_1422nt ATGACTGTCACAAAGTGGGATCTTGTGTGTGATAATGCCTGGAAGGTCCATATCGCTAAGTTCTCCTTACTGGTTGGATTAATCTTTGGC TACCTAATAACTGGATGCATTGCTGACTGGGTCGGCCGGCGGCCTGTGCTGCTGTTTTCCATCATCTTCATTCTGATCTTTGGACTGACT GTGGCACTGTCAGTGAATGTGACAATGTTCAGCACACTCAGGTTCTTTGAAGGATTTTGCCTGGCTGGAATCATTCTCACCTTGTATGCT TTACGAATAGAGCTGTGCCCCCCTGGAAAACGGTTCATGATTACGATGGTGGCGAGCTTCGTGGCCATGGCGGGCCAGTTCCTCATGCCT GGGCTAGCCGCCCTGTGCCGGGATTGGCAGGTGCTGCAGGCCCTCATCATCTGCCCCTTCCTGCTCATGCTGCTCTACTGGTCGATATTC CCCGAGTCCCTCCGGTGGCTAATGGCCACCCAGCAGTTTGAGTCTGCAAAGAGGCTGATCCTCCACTTCACACAGAAGAATCGCATGAAC CCTGAGGGCGACATCAAGGGTGTGATACCAGAGCTGGAGAAAGAGCTTTCCCGGAGGCCCAAGAAGGTCTGCATCGTGAAGGTGGTGGGG ACACGGAACCTGTGGAAGAACATTGTGGTCCTGTGTGTGAACTCGCTGACGGGGTACGGGATCCACCACTGCTTTGCCAGGAGCATGATG GGCCACGAGGTGAAGGTGCCGCTCCTGGAGAACTTCTATGCTGACTACTATACCACGGCCAGCATCGCGCTGGTGTCCTGCCTGGCCATG TGCGTGGTGGTCCGATTCCTCGGGCGCAGGGGAGGGCTGCTGCTCTTCATGATCCTCACCGCCCTGGCCTCACTCCTGCAGCTCGGCCTC CTCAACCTGATTGGAAAGTACAGCCAGCACCCAGACTCAGGGATGAGTGACAGCGTCAAGGACAAATTTTCCATCGCGTTTTCCATCGTG GGCATGTTTGCCTCCCATGCGGTGGGGAGCCTCAGCGTGTTCTTCTGTGCGGAGATCACCCCGACGGTGATAAGGTGTGGCGGGCTGGGG CTGGTGCTGGCCAGCGCGGGCTTCGGCATGCTGACGGCACCCATCATCGAGCTGCACAACCAGAAAGGCTACTTCCTGCACCACATCATC TTTGCCTGCTGCACGCTCATCTGCATCATCTGCATCCTCCTGCTGCCCGAGAGCAGGGACCAGAACCTGCCTGAGAACATTTCTAACGGG GAGCACTACACGCGCCAGCCGCTGCTGCCGCACAAGAAGGGGGAGCAGCCACTGCTGCTCACCAACGCCGAGCTCAAGGACTACTCGGGC |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_CORO2B_ENST00000566799_chr15_68871616_+_SLC22A23_ENST00000436008_chr6_3416089_-_5568nt GCGCCCCCGCTCCGCCGCGGAGTTTCTGCATGACTGTCACAAAGTGGGATCTTGTGTGTGATAATGCCTGGAAGGTCCATATCGCTAAGT TCTCCTTACTGGTTGGATTAATCTTTGGCTACCTAATAACTGGATGCATTGCTGACTGGGTCGGCCGGCGGCCTGTGCTGCTGTTTTCCA TCATCTTCATTCTGATCTTTGGACTGACTGTGGCACTGTCAGTGAATGTGACAATGTTCAGCACACTCAGGTTCTTTGAAGGATTTTGCC TGGCTGGAATCATTCTCACCTTGTATGCTTTACGAATAGAGCTGTGCCCCCCTGGAAAACGGTTCATGATTACGATGGTGGCGAGCTTCG TGGCCATGGCGGGCCAGTTCCTCATGCCTGGGCTAGCCGCCCTGTGCCGGGATTGGCAGGTGCTGCAGGCCCTCATCATCTGCCCCTTCC TGCTCATGCTGCTCTACTGGTCGATATTCCCCGAGTCCCTCCGGTGGCTAATGGCCACCCAGCAGTTTGAGTCTGCAAAGAGGCTGATCC TCCACTTCACACAGAAGAATCGCATGAACCCTGAGGGCGACATCAAGGGTGTGATACCAGAGCTGGAGAAAGAGCTTTCCCGGAGGCCCA AGAAGGTCTGCATCGTGAAGGTGGTGGGGACACGGAACCTGTGGAAGAACATTGTGGTCCTGTGTGTGAACTCGCTGACGGGGTACGGGA TCCACCACTGCTTTGCCAGGAGCATGATGGGCCACGAGGTGAAGGTGCCGCTCCTGGAGAACTTCTATGCTGACTACTATACCACGGCCA GCATCGCGCTGGTGTCCTGCCTGGCCATGTGCGTGGTGGTCCGATTCCTCGGGCGCAGGGGAGGGCTGCTGCTCTTCATGATCCTCACCG CCCTGGCCTCACTCCTGCAGCTCGGCCTCCTCAACCTGATTGGAAAGTACAGCCAGCACCCAGACTCAGAACTGCAGCTGAAGTTGGCCG TAGGGATGAGTGACAGCGTCAAGGACAAATTTTCCATCGCGTTTTCCATCGTGGGCATGTTTGCCTCCCATGCGGTGGGGAGCCTCAGCG TGTTCTTCTGTGCGGAGATCACCCCGACGGTGATAAGGTGTGGCGGGCTGGGGCTGGTGCTGGCCAGCGCGGGCTTCGGCATGCTGACGG CACCCATCATCGAGCTGCACAACCAGAAAGGCTACTTCCTGCACCACATCATCTTTGCCTGCTGCACGCTCATCTGCATCATCTGCATCC TCCTGCTGCCCGAGAGCAGGGACCAGAACCTGCCTGAGAACATTTCTAACGGGGAGCACTACACGCGCCAGCCGCTGCTGCCGCACAAGA AGGGGGAGCAGCCACTGCTGCTCACCAACGCCGAGCTCAAGGACTACTCGGGCCTCCACGATGCCGCAGCCGCGGGTGACACACTGCCCG AGGGTGCCACGGCCAACGGCATGAAGGCCATGTAGCCCGGCCTGCGGAACCCGGGGCTCCAGGGTCTGGGGCAGCTTGGGCACAGGTTTA CAGACCAGGGACCGAACACGCAGCCAGGGGTGGGAAAGCTGCCTCAGCCAAGCTGAGCCTCTCAACTGGTGTGGGGAAATCCTGTCTTTC CAAAAGTCCAAGGAGCGCGGGTCGGAGGAGACAAACTCTTTGGAAATAACCCTTTCAAGACTTTCTTTTCTGCCGTTAAATGTGTGTATT TATTTTGGTCATTTTTACGAGAAGCACTTTATTCCCTCTCCCTCTCACTGATCACAAATGGAATCACCTCCCTGGGCAGCGAGACGCAGT TGCTCTGGGAAGATGCCACAGTGACCAGGGCCATGGCCGGTCCCTCTGGGGAGATGGGACACGGCTCCTGGCAGCACCCAGGAGCCCCCC AGGCTGCCTGCCTGCGTGCAGAGGCAGGAGAGGACCGTGGAGCGTTTCCGGGACTGCATTTTAGACGGAGTGAAATGTACATGAATTTGG CTTTTGCTAGAGTCTGTGTATGGTTTTTTAAGGTCCTTTTTCCCTTTCTGTTTGTAAGGTAAGAGCTTCTGTTCGTGTGCAGGGAAAGCA GCTCACAGACGCCGTTAAAACCAGCTTCATCTTTCCTTCAGGATCATCCTTTTGTACTTGATGCTGGAAGCTCTTGGAGAAAAAGCTTAA ACATTTCACCAGAAATCTTAATTGAGCAGCAGTCATATCGCCACAGCTTTGTGAGTACACAGCTAACAGATGCGTCGAGACCTGAGATGT GCTCGTTTTTATTCCTCCTCTCCCAGATTGGCTCCAGCAGAAAAGTCCCTCGTGCACAGGCAGCTCTTGTGCCGGCACTACTTGAAAACA TGGCTACTTTCTAAGCTACAAACCATTAGAAAATAACTCAAAAAGATGGCAGAGGCAAATCCACAGAAGGGGGGCTGCCCTCCACACACA CACGCCCGTCACCCACACCTTGAGCACACACCATGAAGATCACCAGCTTGGATGGCCGTCACCTCAGACATCACTCCAGGGAGCACCCGC AGGAGCTGGGCCCCCTCACGCCTGCCTTCCTGGGCCAGCTTCCTGCTTGCAGTCACTCGCATAGCACAGAGGTGGGGCTTCGGGCAGGGA GCGGAGATTCCTCATAGGTGAGTCCAAATGACCTCCAGCCTCTCGAAGGCATCAAGACAAATTGAAAGAAAGCAATAACTCACCAAAGCT CAACGCTGCCCCTGCCTCGACCTCCATGGGTCTCTTCGTGTTCCTCGTTTCACCCCAGAAAGTGGAGGTTTCCTCTTGGCATTTTCGGAG GAAACTTGTAGGACACCCAAGGCGACTAAGAGACAGCCTCCTTGGCAAGGGCAGGCACCACTTTGTAGCAACTTGGGCACCAGCTTTTCT GGACAGCCTGGCTTCTTACTGGCATTGTCCAACTCATCCCTTCTCGAAGCATGTCTTTGCCATGGGCTGTGTCCTTCCAGGGAAATTGTG GTCTCGGGCCTGGGTGAGACAATGAAGTGACTTCCAACCGACAGTTGCTAGAATTCACAGGGCAGAAAAGGGGTTGACCTTCTCCCCTTC TGGCTTTCCACCCGGCCTGCTGCTTGCTGTCGCCACTCATGTCTCCTCCACATGCGGTCCACACATCAGTAAGGGCCTGGAGATGTGTAA AGACACAGCAAGGGGCAAGCAGACTCTTGGCCACGTGTTTCCAGTGGCTGGACCACGCCGACACCTGGGATCTTGAGATACCCAGGAAGG GAGGCTGTCTGGCCAGCCTCTCCCTGCCTCCACTTGCTCCACGTCCAGCTCCTCACCTTCCCTCTTTTTTAAAGTCACATTTCCATGTTT CAACATTAGTTTGCATTCACCTTTACAAAGGCCTTTCTTTAGATCTGTGCAGCCTTTGCGTGCCAAACTTGTGAAATTCCTTTTACCTTT TTTGGAGTACTTGCTATAAAGCCACCTGTCAACAAACCCCCATTATGTACAGAATAGGACCTATCCAGTAGCCAGGCCAGTAGGCAGTTG GGGAAGGTGGGAAGGATCCAGCGAGGCCCCTGAGCCTGCACCTGGACAGGTGTACGTCTGCACCCATCACCCTCAGCACCAGGCCACCCT GCAGTCCACTTACTGTACTGTGTTGTGGAAGGATATGCTAAGTGATGAAAGTTGCGAGCAGTCTCACTGGTCGTGTAAACTTTTTTTTTT TTTTGGAAATTGAAGCTGTAGAGTGCTGCCCGAAATCTCTAGGAAGTTGGTGGCAAGGGACAGCACTCACACTCTTCTGGTCATGATCTC TGATCTCCACCTCAAATGACAATAAAAAACTGGTCCAACGAAGACACTGCTCAGCACTTCAGCCATCAGGACTAATCCATCGATGACTGG AAAAGAGGCTAGCTTTGAGGAAAACAGCCTGGGCTCTTGGGAGCAGAGTCCAGTGGGTGTGAGGCTGACTTGCCGACGGTCGGCAGGTAA TGGCTCTCAGCCGGCGAGGCGGTCCCACAGCTCTCCTCCCAGGGCAGCCTGAGGAGGAGGAGGCCGGGTGCCTGTTTGGTGGCAGCTTCA GCCTAGGGATACCTGAAGCTGTTGAGCAACACCTTTATGAAATGTTGCCAGAGCAGCAACACTTCCCTGTGGGCACAGCCCCGGGAAATC CGGTACCAAGTGAGCAAGGTGGCAGGACCCACCCAAGCCTGATACGCATCTGGGCCCGCCGGGCTCAGCAGGGGAGGCTGCTACGGCTGC CCACTTCCCAGCACCGTCTGTCACGCTTGAACCCCTCTGTGCTGTTCCCTTCCTGGCTAATAGGGAGACCCTTCGCAGGCACCCACTGTT TCAACTTGACCCTCCCACCCCCTGCTACTCTCCTCCACACACCCCTCCGTTCCGCTAGCCTACCCTGTCAGCCTTTCAATAAAAGTTATG CACAAATGTGAACACCTGAGATGGAGCTGAACATTTCTTCACTTTGTTCTTTTTCTGAAGTCAAACTCTTATCAAATGCCCTAAAATTAT TACCACCCAAGAGAAACAGGAAAAAGGTTACATGTTTTTGTTTACTGAGAGTAAGATCACCTGCATCTGGAAGACGGGCTGGTAAATTGG TTTGGCTACAGAACAGAAAGAAAACAAAAACAAACCTCGTAAGGGAAGTATCACACTCAGACACCACCGCTTCCTAGAGCCAAATGAGCA ATCCCAAACTGCAAGTGCCATAAGTGGGCCTGTGAGGTCACACCGCCCGGCCCGAGGTATCGCATGTGCGGGGGAGGTCCACACTACAGC TGTCCTCTCGTCTAGAAGGCACCACCTCGCTTTCATGTCCCGTGTGTTTTGGAAAAGCAGTATGGTGTGTCATGTCTAGCGGCGAACACT TCCCTCCCTGTCCTTGAGGTTGTAATATAAAAACTGTGTTTCTGTACGTGTGGGTGGGAATTCTCTGACGGTGCTCGTTCATAGCACAAG CTTACGCTGAGTTCTGAACTGTCGTTCACAGCTGCGTGTCTGCATGGTGTCGCATCTGTTGTACCTTTGGGGAAAATTTGTATGTAAATG TACAGAAATAAAAACGTTGCCCCATTAACAGATTTCCTCTGGAATGTCTTCCCTACCTCACCTGATGGTATCCACCGAAGGGCATTTCAC TACCATTAATGGTGAGTAATAAAATCCTCCGTGTTCATTCAGACCTCACTGCGTCACTACTTTGAACGCCTCTGTAAGCTGTGTCTTCAC TCGCCCCGAGGTGGGTGGAGGGAGGCCTCTCACTCTGCTTCGAGTCCTGGTCTTAAAGGTAGTCAGAGGCAGAGGCTGGATTAAACACAC ACTGTTTACCAAGTGCCACTCTCAGACCACCTGAGAGACGGGGGCCATCAGTAAAATTAAGAGGAATTTTTTTCCCTTGTTCGTGTATGT TCTGCTGATCCGTGGCCTGAAGGTTCCTAGAGACGTCAAGAAATGAATATCTTACACTGTGATTCTGTGAGGAAAGACTGGTAACCCAAA >In-frame_CORO2B_ENST00000566799_chr15_68871616_+_SLC22A23_ENST00000406686_chr6_3416089_-_5048nt GCGCCCCCGCTCCGCCGCGGAGTTTCTGCATGACTGTCACAAAGTGGGATCTTGTGTGTGATAATGCCTGGAAGGTCCATATCGCTAAGT TCTCCTTACTGGTTGGATTAATCTTTGGCTACCTAATAACTGGATGCATTGCTGACTGGGTCGGCCGGCGGCCTGTGCTGCTGTTTTCCA TCATCTTCATTCTGATCTTTGGACTGACTGTGGCACTGTCAGTGAATGTGACAATGTTCAGCACACTCAGGTTCTTTGAAGGATTTTGCC TGGCTGGAATCATTCTCACCTTGTATGCTTTACGAATAGAGCTGTGCCCCCCTGGAAAACGGTTCATGATTACGATGGTGGCGAGCTTCG TGGCCATGGCGGGCCAGTTCCTCATGCCTGGGCTAGCCGCCCTGTGCCGGGATTGGCAGGTGCTGCAGGCCCTCATCATCTGCCCCTTCC TGCTCATGCTGCTCTACTGGTCGATATTCCCCGAGTCCCTCCGGTGGCTAATGGCCACCCAGCAGTTTGAGTCTGCAAAGAGGCTGATCC TCCACTTCACACAGAAGAATCGCATGAACCCTGAGGGCGACATCAAGGGTGTGATACCAGAGCTGGAGAAAGAGCTTTCCCGGAGGCCCA AGAAGGTCTGCATCGTGAAGGTGGTGGGGACACGGAACCTGTGGAAGAACATTGTGGTCCTGTGTGTGAACTCGCTGACGGGGTACGGGA TCCACCACTGCTTTGCCAGGAGCATGATGGGCCACGAGGTGAAGGTGCCGCTCCTGGAGAACTTCTATGCTGACTACTATACCACGGCCA GCATCGCGCTGGTGTCCTGCCTGGCCATGTGCGTGGTGGTCCGATTCCTCGGGCGCAGGGGAGGGCTGCTGCTCTTCATGATCCTCACCG CCCTGGCCTCACTCCTGCAGCTCGGCCTCCTCAACCTGATTGGAAAGTACAGCCAGCACCCAGACTCAGGGATGAGTGACAGCGTCAAGG ACAAATTTTCCATCGCGTTTTCCATCGTGGGCATGTTTGCCTCCCATGCGGTGGGGAGCCTCAGCGTGTTCTTCTGTGCGGAGATCACCC CGACGGTGATAAGGTGTGGCGGGCTGGGGCTGGTGCTGGCCAGCGCGGGCTTCGGCATGCTGACGGCACCCATCATCGAGCTGCACAACC AGAAAGGCTACTTCCTGCACCACATCATCTTTGCCTGCTGCACGCTCATCTGCATCATCTGCATCCTCCTGCTGCCCGAGAGCAGGGACC AGAACCTGCCTGAGAACATTTCTAACGGGGAGCACTACACGCGCCAGCCGCTGCTGCCGCACAAGAAGGGGGAGCAGCCACTGCTGCTCA CCAACGCCGAGCTCAAGGACTACTCGGGCCTCCACGATGCCGCAGCCGCGGGTGACACACTGCCCGAGGGTGCCACGGCCAACGGCATGA AGGCCATGTAGCCCGGCCTGCGGAACCCGGGGCTCCAGGGTCTGGGGCAGCTTGGGCACAGGTTTACAGACCAGGGACCGAACACGCAGC CAGGGGTGGGAAAGCTGCCTCAGCCAAGCTGAGCCTCTCAACTGGTGTGGGGAAATCCTGTCTTTCCAAAAGTCCAAGGAGCGCGGGTCG GAGGAGACAAACTCTTTGGAAATAACCCTTTCAAGACTTTCTTTTCTGCCGTTAAATGTGTGTATTTATTTTGGTCATTTTTACGAGAAG CACTTTATTCCCTCTCCCTCTCACTGATCACAAATGGAATCACCTCCCTGGGCAGCGAGACGCAGTTGCTCTGGGAAGATGCCACAGTGA CCAGGGCCATGGCCGGTCCCTCTGGGGAGATGGGACACGGCTCCTGGCAGCACCCAGGAGCCCCCCAGGCTGCCTGCCTGCGTGCAGAGG CAGGAGAGGACCGTGGAGCGTTTCCGGGACTGCATTTTAGACGGAGTGAAATGTACATGAATTTGGCTTTTGCTAGAGTCTGTGTATGGT TTTTTAAGGTCCTTTTTCCCTTTCTGTTTGTAAGGTAAGAGCTTCTGTTCGTGTGCAGGGAAAGCAGCTCACAGACGCCGTTAAAACCAG CTTCATCTTTCCTTCAGGATCATCCTTTTGTACTTGATGCTGGAAGCTCTTGGAGAAAAAGCTTAAACATTTCACCAGAAATCTTAATTG AGCAGCAGTCATATCGCCACAGCTTTGTGAGTACACAGCTAACAGATGCGTCGAGACCTGAGATGTGCTCGTTTTTATTCCTCCTCTCCC AGATTGGCTCCAGCAGAAAAGTCCCTCGTGCACAGGCAGCTCTTGTGCCGGCACTACTTGAAAACATGGCTACTTTCTAAGCTACAAACC ATTAGAAAATAACTCAAAAAGATGGCAGAGGCAAATCCACAGAAGGGGGGCTGCCCTCCACACACACACGCCCGTCACCCACACCTTGAG CACACACCATGAAGATCACCAGCTTGGATGGCCGTCACCTCAGACATCACTCCAGGGAGCACCCGCAGGAGCTGGGCCCCCTCACGCCTG CCTTCCTGGGCCAGCTTCCTGCTTGCAGTCACTCGCATAGCACAGAGGTGGGGCTTCGGGCAGGGAGCGGAGATTCCTCATAGGTGAGTC CAAATGACCTCCAGCCTCTCGAAGGCATCAAGACAAATTGAAAGAAAGCAATAACTCACCAAAGCTCAACGCTGCCCCTGCCTCGACCTC CATGGGTCTCTTCGTGTTCCTCGTTTCACCCCAGAAAGTGGAGGTTTCCTCTTGGCATTTTCGGAGGAAACTTGTAGGACACCCAAGGCG ACTAAGAGACAGCCTCCTTGGCAAGGGCAGGCACCACTTTGTAGCAACTTGGGCACCAGCTTTTCTGGACAGCCTGGCTTCTTACTGGCA TTGTCCAACTCATCCCTTCTCGAAGCATGTCTTTGCCATGGGCTGTGTCCTTCCAGGGAAATTGTGGTCTCGGGCCTGGGTGAGACAATG AAGTGACTTCCAACCGACAGTTGCTAGAATTCACAGGGCAGAAAAGGGGTTGACCTTCTCCCCTTCTGGCTTTCCACCCGGCCTGCTGCT TGCTGTCGCCACTCATGTCTCCTCCACATGCGGTCCACACATCAGTAAGGGCCTGGAGATGTGTAAAGACACAGCAAGGGGCAAGCAGAC TCTTGGCCACGTGTTTCCAGTGGCTGGACCACGCCGACACCTGGGATCTTGAGATACCCAGGAAGGGAGGCTGTCTGGCCAGCCTCTCCC TGCCTCCACTTGCTCCACGTCCAGCTCCTCACCTTCCCTCTTTTTTAAAGTCACATTTCCATGTTTCAACATTAGTTTGCATTCACCTTT ACAAAGGCCTTTCTTTAGATCTGTGCAGCCTTTGCGTGCCAAACTTGTGAAATTCCTTTTACCTTTTTTGGAGTACTTGCTATAAAGCCA CCTGTCAACAAACCCCCATTATGTACAGAATAGGACCTATCCAGTAGCCAGGCCAGTAGGCAGTTGGGGAAGGTGGGAAGGATCCAGCGA GGCCCCTGAGCCTGCACCTGGACAGGTGTACGTCTGCACCCATCACCCTCAGCACCAGGCCACCCTGCAGTCCACTTACTGTACTGTGTT GTGGAAGGATATGCTAAGTGATGAAAGTTGCGAGCAGTCTCACTGGTCGTGTAAACTTTTTTTTTTTTTTGGAAATTGAAGCTGTAGAGT GCTGCCCGAAATCTCTAGGAAGTTGGTGGCAAGGGACAGCACTCACACTCTTCTGGTCATGATCTCTGATCTCCACCTCAAATGACAATA AAAAACTGGTCCAACGAAGACACTGCTCAGCACTTCAGCCATCAGGACTAATCCATCGATGACTGGAAAAGAGGCTAGCTTTGAGGAAAA CAGCCTGGGCTCTTGGGAGCAGAGTCCAGTGGGTGTGAGGCTGACTTGCCGACGGTCGGCAGGTAATGGCTCTCAGCCGGCGAGGCGGTC CCACAGCTCTCCTCCCAGGGCAGCCTGAGGAGGAGGAGGCCGGGTGCCTGTTTGGTGGCAGCTTCAGCCTAGGGATACCTGAAGCTGTTG AGCAACACCTTTATGAAATGTTGCCAGAGCAGCAACACTTCCCTGTGGGCACAGCCCCGGGAAATCCGGTACCAAGTGAGCAAGGTGGCA GGACCCACCCAAGCCTGATACGCATCTGGGCCCGCCGGGCTCAGCAGGGGAGGCTGCTACGGCTGCCCACTTCCCAGCACCGTCTGTCAC GCTTGAACCCCTCTGTGCTGTTCCCTTCCTGGCTAATAGGGAGACCCTTCGCAGGCACCCACTGTTTCAACTTGACCCTCCCACCCCCTG CTACTCTCCTCCACACACCCCTCCGTTCCGCTAGCCTACCCTGTCAGCCTTTCAATAAAAGTTATGCACAAATGTGAACACCTGAGATGG AGCTGAACATTTCTTCACTTTGTTCTTTTTCTGAAGTCAAACTCTTATCAAATGCCCTAAAATTATTACCACCCAAGAGAAACAGGAAAA AGGTTACATGTTTTTGTTTACTGAGAGTAAGATCACCTGCATCTGGAAGACGGGCTGGTAAATTGGTTTGGCTACAGAACAGAAAGAAAA CAAAAACAAACCTCGTAAGGGAAGTATCACACTCAGACACCACCGCTTCCTAGAGCCAAATGAGCAATCCCAAACTGCAAGTGCCATAAG TGGGCCTGTGAGGTCACACCGCCCGGCCCGAGGTATCGCATGTGCGGGGGAGGTCCACACTACAGCTGTCCTCTCGTCTAGAAGGCACCA CCTCGCTTTCATGTCCCGTGTGTTTTGGAAAAGCAGTATGGTGTGTCATGTCTAGCGGCGAACACTTCCCTCCCTGTCCTTGAGGTTGTA ATATAAAAACTGTGTTTCTGTACGTGTGGGTGGGAATTCTCTGACGGTGCTCGTTCATAGCACAAGCTTACGCTGAGTTCTGAACTGTCG TTCACAGCTGCGTGTCTGCATGGTGTCGCATCTGTTGTACCTTTGGGGAAAATTTGTATGTAAATGTACAGAAATAAAAACGTTGCCCCA 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FusionGenePPI for CORO2B_SLC22A23 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
CORO2B | TSC22D1, VCL, APPBP2, CORO2A, PRKG1, SHC1, ARHGEF25 | SLC22A23 | KRTAP5-9, PSMA3, KRTAP10-8, NOTCH2NL, LGALS8, CLEC2D, ATP6V0D1, BMP4, DLK2, SIRT2, PAXBP1, KPRP, TAX1BP1, DSCC1 |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for CORO2B_SLC22A23 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for CORO2B_SLC22A23 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | SLC22A23 | C0023893 | Liver Cirrhosis, Experimental | 1 | CTD_human |