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Fusion gene ID: 8074 |
FusionGeneSummary for COPE_TMED1 |
Fusion gene summary |
Fusion gene information | Fusion gene name: COPE_TMED1 | Fusion gene ID: 8074 | Hgene | Tgene | Gene symbol | COPE | TMED1 | Gene ID | 11316 | 11018 |
Gene name | coatomer protein complex subunit epsilon | transmembrane p24 trafficking protein 1 | |
Synonyms | epsilon-COP | IL1RL1LG|Il1rl1l|Tp24|p24g1 | |
Cytomap | 19p13.11 | 19p13.2 | |
Type of gene | protein-coding | protein-coding | |
Description | coatomer subunit epsiloncoatomer epsilon subunitepsilon coat protein | transmembrane emp24 domain-containing protein 1IL1RL1-binding proteininterleukin 1 receptor-like 1 ligandp24 family protein gamma-1putative T1/ST2 receptor-binding proteintransmembrane emp24 protein transport domain containing 1 | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | O14579 | Q13445 | |
Ensembl transtripts involved in fusion gene | ENST00000262812, ENST00000349893, ENST00000600932, ENST00000598969, ENST00000351079, | ENST00000214869, ENST00000591695, ENST00000588289, | |
Fusion gene scores | * DoF score | 5 X 5 X 3=75 | 2 X 2 X 2=8 |
# samples | 5 | 2 | |
** MAII score | log2(5/75*10)=-0.584962500721156 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(2/8*10)=1.32192809488736 | |
Context | PubMed: COPE [Title/Abstract] AND TMED1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | SARC | TCGA-DX-A8BL-01A | COPE | chr19 | 19023793 | - | TMED1 | chr19 | 10946029 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000262812 | ENST00000214869 | COPE | chr19 | 19023793 | - | TMED1 | chr19 | 10946029 | - |
In-frame | ENST00000262812 | ENST00000591695 | COPE | chr19 | 19023793 | - | TMED1 | chr19 | 10946029 | - |
5CDS-5UTR | ENST00000262812 | ENST00000588289 | COPE | chr19 | 19023793 | - | TMED1 | chr19 | 10946029 | - |
In-frame | ENST00000349893 | ENST00000214869 | COPE | chr19 | 19023793 | - | TMED1 | chr19 | 10946029 | - |
In-frame | ENST00000349893 | ENST00000591695 | COPE | chr19 | 19023793 | - | TMED1 | chr19 | 10946029 | - |
5CDS-5UTR | ENST00000349893 | ENST00000588289 | COPE | chr19 | 19023793 | - | TMED1 | chr19 | 10946029 | - |
In-frame | ENST00000600932 | ENST00000214869 | COPE | chr19 | 19023793 | - | TMED1 | chr19 | 10946029 | - |
In-frame | ENST00000600932 | ENST00000591695 | COPE | chr19 | 19023793 | - | TMED1 | chr19 | 10946029 | - |
5CDS-5UTR | ENST00000600932 | ENST00000588289 | COPE | chr19 | 19023793 | - | TMED1 | chr19 | 10946029 | - |
5UTR-3CDS | ENST00000598969 | ENST00000214869 | COPE | chr19 | 19023793 | - | TMED1 | chr19 | 10946029 | - |
5UTR-3CDS | ENST00000598969 | ENST00000591695 | COPE | chr19 | 19023793 | - | TMED1 | chr19 | 10946029 | - |
5UTR-5UTR | ENST00000598969 | ENST00000588289 | COPE | chr19 | 19023793 | - | TMED1 | chr19 | 10946029 | - |
In-frame | ENST00000351079 | ENST00000214869 | COPE | chr19 | 19023793 | - | TMED1 | chr19 | 10946029 | - |
In-frame | ENST00000351079 | ENST00000591695 | COPE | chr19 | 19023793 | - | TMED1 | chr19 | 10946029 | - |
5CDS-5UTR | ENST00000351079 | ENST00000588289 | COPE | chr19 | 19023793 | - | TMED1 | chr19 | 10946029 | - |
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FusionProtFeatures for COPE_TMED1 |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
COPE | TMED1 |
The coatomer is a cytosolic protein complex that bindsto dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosyntheticprotein transport from the ER, via the Golgi up to the trans Golginetwork. The coatomer complex is required for budding from Golgimembranes, and is essential for the retrograde Golgi-to-ERtransport of dilysine-tagged proteins. In mammals, the coatomercan only be recruited by membranes associated with ADP-ribosylation factors (ARFs), which are small GTP-binding proteins;the complex also influences the Golgi structural integrity, aswell as the processing, activity, and endocytic recycling of LDLreceptors (By similarity). {ECO:0000250}. | Potential role in vesicular protein trafficking, mainlyin the early secretory pathway. May act as a cargo receptor at thelumenal side for incorporation of secretory cargo molecules intotransport vesicles and may be involved in vesicle coat formationat the cytoplasmic side. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | >TMED1 | chr19:19023793 | chr19:10946029 | ENST00000214869 | - | 0 | 4 | 145_170 | 61 | 228 | Coiled coil | Ontology_term=ECO:0000255 |
Tgene | >TMED1 | chr19:19023793 | chr19:10946029 | ENST00000214869 | - | 0 | 4 | 218_219 | 61 | 228 | Motif | COPII vesicle coat-binding |
Tgene | >TMED1 | chr19:19023793 | chr19:10946029 | ENST00000214869 | - | 0 | 4 | 218_227 | 61 | 228 | Motif | COPI vesicle coat-binding |
Tgene | >TMED1 | chr19:19023793 | chr19:10946029 | ENST00000214869 | - | 0 | 4 | 216_227 | 61 | 228 | Topological domain | Cytoplasmic |
Tgene | >TMED1 | chr19:19023793 | chr19:10946029 | ENST00000214869 | - | 0 | 4 | 195_215 | 61 | 228 | Transmembrane | Helical |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | TMED1 | chr19:19023793 | chr19:10946029 | ENST00000214869 | - | 0 | 4 | 43_125 | 61 | 228 | Domain | GOLD |
Tgene | TMED1 | chr19:19023793 | chr19:10946029 | ENST00000214869 | - | 0 | 4 | 24_194 | 61 | 228 | Topological domain | Extracellular |
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FusionGeneSequence for COPE_TMED1 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_COPE_ENST00000262812_chr19_19023793_-_TMED1_ENST00000214869_chr19_10946029_-_230aa MAPPAPGPASGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKLSSPERDVERDVFLYRAYLAQVIGGAGLDVDFTLESPQGVLLVSESRK ADGVHTVEPTEAGDYKLCFDNSFSTISEKLVFFELIFDSLQDDEEVEGWAEAVEPEEMLDVKMEDIKESIETMRTRLERSIQMLTLLRAF >In-frame_COPE_ENST00000262812_chr19_19023793_-_TMED1_ENST00000591695_chr19_10946029_-_188aa MAPPAPGPASGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKLSSPERDVERDVFLYRAYLAQVIGGAGLDVDFTLESPQGVLLVSESRK ADGVHTSPLRPCGPGWSAASRCSRYCGPSRHVTATCKRATWSGSTSGQLSTWRCCCWWLCCRSARSSASSRTSARCPRSPCHGRKNGTKE >In-frame_COPE_ENST00000349893_chr19_19023793_-_TMED1_ENST00000214869_chr19_10946029_-_230aa MAPPAPGPASGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKLSSPERDVERDVFLYRAYLAQVIGGAGLDVDFTLESPQGVLLVSESRK ADGVHTVEPTEAGDYKLCFDNSFSTISEKLVFFELIFDSLQDDEEVEGWAEAVEPEEMLDVKMEDIKESIETMRTRLERSIQMLTLLRAF >In-frame_COPE_ENST00000349893_chr19_19023793_-_TMED1_ENST00000591695_chr19_10946029_-_188aa MAPPAPGPASGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKLSSPERDVERDVFLYRAYLAQVIGGAGLDVDFTLESPQGVLLVSESRK ADGVHTSPLRPCGPGWSAASRCSRYCGPSRHVTATCKRATWSGSTSGQLSTWRCCCWWLCCRSARSSASSRTSARCPRSPCHGRKNGTKE >In-frame_COPE_ENST00000600932_chr19_19023793_-_TMED1_ENST00000214869_chr19_10946029_-_230aa MAPPAPGPASGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKLSSPERDVERDVFLYRAYLAQVIGGAGLDVDFTLESPQGVLLVSESRK ADGVHTVEPTEAGDYKLCFDNSFSTISEKLVFFELIFDSLQDDEEVEGWAEAVEPEEMLDVKMEDIKESIETMRTRLERSIQMLTLLRAF >In-frame_COPE_ENST00000600932_chr19_19023793_-_TMED1_ENST00000591695_chr19_10946029_-_188aa MAPPAPGPASGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKLSSPERDVERDVFLYRAYLAQVIGGAGLDVDFTLESPQGVLLVSESRK ADGVHTSPLRPCGPGWSAASRCSRYCGPSRHVTATCKRATWSGSTSGQLSTWRCCCWWLCCRSARSSASSRTSARCPRSPCHGRKNGTKE >In-frame_COPE_ENST00000351079_chr19_19023793_-_TMED1_ENST00000214869_chr19_10946029_-_230aa MAPPAPGPASGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKLSSPERDVERDVFLYRAYLAQVIGGAGLDVDFTLESPQGVLLVSESRK ADGVHTVEPTEAGDYKLCFDNSFSTISEKLVFFELIFDSLQDDEEVEGWAEAVEPEEMLDVKMEDIKESIETMRTRLERSIQMLTLLRAF >In-frame_COPE_ENST00000351079_chr19_19023793_-_TMED1_ENST00000591695_chr19_10946029_-_188aa MAPPAPGPASGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKLSSPERDVERDVFLYRAYLAQVIGGAGLDVDFTLESPQGVLLVSESRK ADGVHTSPLRPCGPGWSAASRCSRYCGPSRHVTATCKRATWSGSTSGQLSTWRCCCWWLCCRSARSSASSRTSARCPRSPCHGRKNGTKE |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_COPE_ENST00000262812_chr19_19023793_-_TMED1_ENST00000214869_chr19_10946029_-_690nt ATGGCGCCTCCGGCCCCCGGCCCGGCCTCCGGCGGCTCCGGGGAGGTAGACGAGCTGTTCGACGTAAAGAACGCCTTCTACATCGGCAGC TACCAGCAGTGCATAAACGAGGCGCAGCGGGTGAAGCTATCAAGCCCAGAGAGAGACGTGGAGAGGGACGTCTTCCTGTATAGAGCGTAC CTGGCGCAGGTGATCGGAGGTGCTGGACTGGACGTGGACTTCACGCTGGAGAGCCCTCAGGGCGTGCTGTTGGTCAGCGAGTCCCGCAAG GCTGATGGGGTACACACGGTGGAGCCAACGGAGGCCGGGGACTACAAGCTGTGCTTTGACAACTCCTTCAGCACCATCTCCGAGAAGCTG GTGTTCTTTGAACTGATCTTTGACAGCCTCCAGGATGACGAGGAGGTCGAAGGATGGGCAGAGGCTGTGGAGCCCGAGGAGATGCTGGAT GTTAAAATGGAGGACATCAAGGAGTCCATTGAGACCATGCGGACCCGGCTGGAGCGCAGCATCCAGATGCTCACGCTACTGCGGGCCTTC GAGGCACGTGACCGCAACCTGCAAGAGGGCAACTTGGAGCGGGTCAACTTCTGGTCAGCTGTCAACGTGGCGGTGCTGCTGCTGGTGGCT >In-frame_COPE_ENST00000262812_chr19_19023793_-_TMED1_ENST00000591695_chr19_10946029_-_564nt ATGGCGCCTCCGGCCCCCGGCCCGGCCTCCGGCGGCTCCGGGGAGGTAGACGAGCTGTTCGACGTAAAGAACGCCTTCTACATCGGCAGC TACCAGCAGTGCATAAACGAGGCGCAGCGGGTGAAGCTATCAAGCCCAGAGAGAGACGTGGAGAGGGACGTCTTCCTGTATAGAGCGTAC CTGGCGCAGGTGATCGGAGGTGCTGGACTGGACGTGGACTTCACGCTGGAGAGCCCTCAGGGCGTGCTGTTGGTCAGCGAGTCCCGCAAG GCTGATGGGGTACACACGAGTCCATTGAGACCATGCGGACCCGGCTGGAGCGCAGCATCCAGATGCTCACGCTACTGCGGGCCTTCGAGG CACGTGACCGCAACCTGCAAGAGGGCAACTTGGAGCGGGTCAACTTCTGGTCAGCTGTCAACGTGGCGGTGCTGCTGCTGGTGGCTGTGC TGCAGGTCTGCACGCTCAAGCGCTTCTTCCAGGACAAGCGCCCGGTGCCCACGTAGCCCCTGCCATGGAAGGAAGAACGGGACAAAGGAG >In-frame_COPE_ENST00000349893_chr19_19023793_-_TMED1_ENST00000214869_chr19_10946029_-_690nt ATGGCGCCTCCGGCCCCCGGCCCGGCCTCCGGCGGCTCCGGGGAGGTAGACGAGCTGTTCGACGTAAAGAACGCCTTCTACATCGGCAGC TACCAGCAGTGCATAAACGAGGCGCAGCGGGTGAAGCTATCAAGCCCAGAGAGAGACGTGGAGAGGGACGTCTTCCTGTATAGAGCGTAC CTGGCGCAGGTGATCGGAGGTGCTGGACTGGACGTGGACTTCACGCTGGAGAGCCCTCAGGGCGTGCTGTTGGTCAGCGAGTCCCGCAAG GCTGATGGGGTACACACGGTGGAGCCAACGGAGGCCGGGGACTACAAGCTGTGCTTTGACAACTCCTTCAGCACCATCTCCGAGAAGCTG GTGTTCTTTGAACTGATCTTTGACAGCCTCCAGGATGACGAGGAGGTCGAAGGATGGGCAGAGGCTGTGGAGCCCGAGGAGATGCTGGAT GTTAAAATGGAGGACATCAAGGAGTCCATTGAGACCATGCGGACCCGGCTGGAGCGCAGCATCCAGATGCTCACGCTACTGCGGGCCTTC GAGGCACGTGACCGCAACCTGCAAGAGGGCAACTTGGAGCGGGTCAACTTCTGGTCAGCTGTCAACGTGGCGGTGCTGCTGCTGGTGGCT >In-frame_COPE_ENST00000349893_chr19_19023793_-_TMED1_ENST00000591695_chr19_10946029_-_564nt ATGGCGCCTCCGGCCCCCGGCCCGGCCTCCGGCGGCTCCGGGGAGGTAGACGAGCTGTTCGACGTAAAGAACGCCTTCTACATCGGCAGC TACCAGCAGTGCATAAACGAGGCGCAGCGGGTGAAGCTATCAAGCCCAGAGAGAGACGTGGAGAGGGACGTCTTCCTGTATAGAGCGTAC CTGGCGCAGGTGATCGGAGGTGCTGGACTGGACGTGGACTTCACGCTGGAGAGCCCTCAGGGCGTGCTGTTGGTCAGCGAGTCCCGCAAG GCTGATGGGGTACACACGAGTCCATTGAGACCATGCGGACCCGGCTGGAGCGCAGCATCCAGATGCTCACGCTACTGCGGGCCTTCGAGG CACGTGACCGCAACCTGCAAGAGGGCAACTTGGAGCGGGTCAACTTCTGGTCAGCTGTCAACGTGGCGGTGCTGCTGCTGGTGGCTGTGC TGCAGGTCTGCACGCTCAAGCGCTTCTTCCAGGACAAGCGCCCGGTGCCCACGTAGCCCCTGCCATGGAAGGAAGAACGGGACAAAGGAG >In-frame_COPE_ENST00000600932_chr19_19023793_-_TMED1_ENST00000214869_chr19_10946029_-_690nt ATGGCGCCTCCGGCCCCCGGCCCGGCCTCCGGCGGCTCCGGGGAGGTAGACGAGCTGTTCGACGTAAAGAACGCCTTCTACATCGGCAGC TACCAGCAGTGCATAAACGAGGCGCAGCGGGTGAAGCTATCAAGCCCAGAGAGAGACGTGGAGAGGGACGTCTTCCTGTATAGAGCGTAC CTGGCGCAGGTGATCGGAGGTGCTGGACTGGACGTGGACTTCACGCTGGAGAGCCCTCAGGGCGTGCTGTTGGTCAGCGAGTCCCGCAAG GCTGATGGGGTACACACGGTGGAGCCAACGGAGGCCGGGGACTACAAGCTGTGCTTTGACAACTCCTTCAGCACCATCTCCGAGAAGCTG GTGTTCTTTGAACTGATCTTTGACAGCCTCCAGGATGACGAGGAGGTCGAAGGATGGGCAGAGGCTGTGGAGCCCGAGGAGATGCTGGAT GTTAAAATGGAGGACATCAAGGAGTCCATTGAGACCATGCGGACCCGGCTGGAGCGCAGCATCCAGATGCTCACGCTACTGCGGGCCTTC GAGGCACGTGACCGCAACCTGCAAGAGGGCAACTTGGAGCGGGTCAACTTCTGGTCAGCTGTCAACGTGGCGGTGCTGCTGCTGGTGGCT >In-frame_COPE_ENST00000600932_chr19_19023793_-_TMED1_ENST00000591695_chr19_10946029_-_564nt ATGGCGCCTCCGGCCCCCGGCCCGGCCTCCGGCGGCTCCGGGGAGGTAGACGAGCTGTTCGACGTAAAGAACGCCTTCTACATCGGCAGC TACCAGCAGTGCATAAACGAGGCGCAGCGGGTGAAGCTATCAAGCCCAGAGAGAGACGTGGAGAGGGACGTCTTCCTGTATAGAGCGTAC CTGGCGCAGGTGATCGGAGGTGCTGGACTGGACGTGGACTTCACGCTGGAGAGCCCTCAGGGCGTGCTGTTGGTCAGCGAGTCCCGCAAG GCTGATGGGGTACACACGAGTCCATTGAGACCATGCGGACCCGGCTGGAGCGCAGCATCCAGATGCTCACGCTACTGCGGGCCTTCGAGG CACGTGACCGCAACCTGCAAGAGGGCAACTTGGAGCGGGTCAACTTCTGGTCAGCTGTCAACGTGGCGGTGCTGCTGCTGGTGGCTGTGC TGCAGGTCTGCACGCTCAAGCGCTTCTTCCAGGACAAGCGCCCGGTGCCCACGTAGCCCCTGCCATGGAAGGAAGAACGGGACAAAGGAG >In-frame_COPE_ENST00000351079_chr19_19023793_-_TMED1_ENST00000214869_chr19_10946029_-_690nt ATGGCGCCTCCGGCCCCCGGCCCGGCCTCCGGCGGCTCCGGGGAGGTAGACGAGCTGTTCGACGTAAAGAACGCCTTCTACATCGGCAGC TACCAGCAGTGCATAAACGAGGCGCAGCGGGTGAAGCTATCAAGCCCAGAGAGAGACGTGGAGAGGGACGTCTTCCTGTATAGAGCGTAC CTGGCGCAGGTGATCGGAGGTGCTGGACTGGACGTGGACTTCACGCTGGAGAGCCCTCAGGGCGTGCTGTTGGTCAGCGAGTCCCGCAAG GCTGATGGGGTACACACGGTGGAGCCAACGGAGGCCGGGGACTACAAGCTGTGCTTTGACAACTCCTTCAGCACCATCTCCGAGAAGCTG GTGTTCTTTGAACTGATCTTTGACAGCCTCCAGGATGACGAGGAGGTCGAAGGATGGGCAGAGGCTGTGGAGCCCGAGGAGATGCTGGAT GTTAAAATGGAGGACATCAAGGAGTCCATTGAGACCATGCGGACCCGGCTGGAGCGCAGCATCCAGATGCTCACGCTACTGCGGGCCTTC GAGGCACGTGACCGCAACCTGCAAGAGGGCAACTTGGAGCGGGTCAACTTCTGGTCAGCTGTCAACGTGGCGGTGCTGCTGCTGGTGGCT >In-frame_COPE_ENST00000351079_chr19_19023793_-_TMED1_ENST00000591695_chr19_10946029_-_564nt ATGGCGCCTCCGGCCCCCGGCCCGGCCTCCGGCGGCTCCGGGGAGGTAGACGAGCTGTTCGACGTAAAGAACGCCTTCTACATCGGCAGC TACCAGCAGTGCATAAACGAGGCGCAGCGGGTGAAGCTATCAAGCCCAGAGAGAGACGTGGAGAGGGACGTCTTCCTGTATAGAGCGTAC CTGGCGCAGGTGATCGGAGGTGCTGGACTGGACGTGGACTTCACGCTGGAGAGCCCTCAGGGCGTGCTGTTGGTCAGCGAGTCCCGCAAG GCTGATGGGGTACACACGAGTCCATTGAGACCATGCGGACCCGGCTGGAGCGCAGCATCCAGATGCTCACGCTACTGCGGGCCTTCGAGG CACGTGACCGCAACCTGCAAGAGGGCAACTTGGAGCGGGTCAACTTCTGGTCAGCTGTCAACGTGGCGGTGCTGCTGCTGGTGGCTGTGC TGCAGGTCTGCACGCTCAAGCGCTTCTTCCAGGACAAGCGCCCGGTGCCCACGTAGCCCCTGCCATGGAAGGAAGAACGGGACAAAGGAG |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_COPE_ENST00000262812_chr19_19023793_-_TMED1_ENST00000214869_chr19_10946029_-_1296nt TCCGGCTGACGTGTCTTTCAGGAAGAGGAGCTGGTGAGAAGACAGCGAAATGGCGCCTCCGGCCCCCGGCCCGGCCTCCGGCGGCTCCGG GGAGGTAGACGAGCTGTTCGACGTAAAGAACGCCTTCTACATCGGCAGCTACCAGCAGTGCATAAACGAGGCGCAGCGGGTGAAGCTATC AAGCCCAGAGAGAGACGTGGAGAGGGACGTCTTCCTGTATAGAGCGTACCTGGCGCAGGTGATCGGAGGTGCTGGACTGGACGTGGACTT CACGCTGGAGAGCCCTCAGGGCGTGCTGTTGGTCAGCGAGTCCCGCAAGGCTGATGGGGTACACACGGTGGAGCCAACGGAGGCCGGGGA CTACAAGCTGTGCTTTGACAACTCCTTCAGCACCATCTCCGAGAAGCTGGTGTTCTTTGAACTGATCTTTGACAGCCTCCAGGATGACGA GGAGGTCGAAGGATGGGCAGAGGCTGTGGAGCCCGAGGAGATGCTGGATGTTAAAATGGAGGACATCAAGGAGTCCATTGAGACCATGCG GACCCGGCTGGAGCGCAGCATCCAGATGCTCACGCTACTGCGGGCCTTCGAGGCACGTGACCGCAACCTGCAAGAGGGCAACTTGGAGCG GGTCAACTTCTGGTCAGCTGTCAACGTGGCGGTGCTGCTGCTGGTGGCTGTGCTGCAGGTCTGCACGCTCAAGCGCTTCTTCCAGGACAA GCGCCCGGTGCCCACGTAGCCCCTGCCATGGAAGGAAGAACGGGACAAAGGAGGGGCAGCAGGGTGTGTGCATATGAGACTTGGGGGTCC CTCCCCAATTTTAGTTTCCTGCCAAAACGGGAGTGTGCAGTCAGGGCCTGCGGTCTGGCCCCATGAGTCTCCTTCCGTCCTCAGCGGGCA GGGAACACCTCTGGCTTGTAGAAGGGACGGCTCAGTGGCTGCACCGACGGTCCTGGAAATCTCACATGGTGGGCACTGCAGCGTTGGAAC GTGAGCCTCGGATTTCCTGGCCCCTCTACTGTAAATGTGCCTTAGCCTAAGCCTCCCATCCTGTGTTAGCGTTGCCTGGTGCGGGGCAGG GCCTAACAAGGAAACCTGGGCCCTCCAAGCCAGGTTGAGGTCTGGTAACAGAATGCCAGGAAGGGGGCCTGGAAGACCACCTGCCCCGGC CCCTCTCCTGCAGGGGCCCCACACAGGCATGAGGGATGGCCCGGCCAAAGTCTAGGCAGAAGCCTCCTATAACAAAGGGTGGTGTGGCCT >In-frame_COPE_ENST00000262812_chr19_19023793_-_TMED1_ENST00000591695_chr19_10946029_-_737nt TCCGGCTGACGTGTCTTTCAGGAAGAGGAGCTGGTGAGAAGACAGCGAAATGGCGCCTCCGGCCCCCGGCCCGGCCTCCGGCGGCTCCGG GGAGGTAGACGAGCTGTTCGACGTAAAGAACGCCTTCTACATCGGCAGCTACCAGCAGTGCATAAACGAGGCGCAGCGGGTGAAGCTATC AAGCCCAGAGAGAGACGTGGAGAGGGACGTCTTCCTGTATAGAGCGTACCTGGCGCAGGTGATCGGAGGTGCTGGACTGGACGTGGACTT CACGCTGGAGAGCCCTCAGGGCGTGCTGTTGGTCAGCGAGTCCCGCAAGGCTGATGGGGTACACACGAGTCCATTGAGACCATGCGGACC CGGCTGGAGCGCAGCATCCAGATGCTCACGCTACTGCGGGCCTTCGAGGCACGTGACCGCAACCTGCAAGAGGGCAACTTGGAGCGGGTC AACTTCTGGTCAGCTGTCAACGTGGCGGTGCTGCTGCTGGTGGCTGTGCTGCAGGTCTGCACGCTCAAGCGCTTCTTCCAGGACAAGCGC CCGGTGCCCACGTAGCCCCTGCCATGGAAGGAAGAACGGGACAAAGGAGGGGCAGCAGGGTGTGTGCATATGAGACTTGGGGGTCCCTCC CCAATTTTAGTTTCCTGCCAAAACGGGAGTGTGCAGTCAGGGCCTGCGGTCTGGCCCCATGAGTCTCCTTCCGTCCTCAGCGGGCAGGGA >In-frame_COPE_ENST00000349893_chr19_19023793_-_TMED1_ENST00000214869_chr19_10946029_-_1262nt TGAGAAGACAGCGAAATGGCGCCTCCGGCCCCCGGCCCGGCCTCCGGCGGCTCCGGGGAGGTAGACGAGCTGTTCGACGTAAAGAACGCC TTCTACATCGGCAGCTACCAGCAGTGCATAAACGAGGCGCAGCGGGTGAAGCTATCAAGCCCAGAGAGAGACGTGGAGAGGGACGTCTTC CTGTATAGAGCGTACCTGGCGCAGGTGATCGGAGGTGCTGGACTGGACGTGGACTTCACGCTGGAGAGCCCTCAGGGCGTGCTGTTGGTC AGCGAGTCCCGCAAGGCTGATGGGGTACACACGGTGGAGCCAACGGAGGCCGGGGACTACAAGCTGTGCTTTGACAACTCCTTCAGCACC ATCTCCGAGAAGCTGGTGTTCTTTGAACTGATCTTTGACAGCCTCCAGGATGACGAGGAGGTCGAAGGATGGGCAGAGGCTGTGGAGCCC GAGGAGATGCTGGATGTTAAAATGGAGGACATCAAGGAGTCCATTGAGACCATGCGGACCCGGCTGGAGCGCAGCATCCAGATGCTCACG CTACTGCGGGCCTTCGAGGCACGTGACCGCAACCTGCAAGAGGGCAACTTGGAGCGGGTCAACTTCTGGTCAGCTGTCAACGTGGCGGTG CTGCTGCTGGTGGCTGTGCTGCAGGTCTGCACGCTCAAGCGCTTCTTCCAGGACAAGCGCCCGGTGCCCACGTAGCCCCTGCCATGGAAG GAAGAACGGGACAAAGGAGGGGCAGCAGGGTGTGTGCATATGAGACTTGGGGGTCCCTCCCCAATTTTAGTTTCCTGCCAAAACGGGAGT GTGCAGTCAGGGCCTGCGGTCTGGCCCCATGAGTCTCCTTCCGTCCTCAGCGGGCAGGGAACACCTCTGGCTTGTAGAAGGGACGGCTCA GTGGCTGCACCGACGGTCCTGGAAATCTCACATGGTGGGCACTGCAGCGTTGGAACGTGAGCCTCGGATTTCCTGGCCCCTCTACTGTAA ATGTGCCTTAGCCTAAGCCTCCCATCCTGTGTTAGCGTTGCCTGGTGCGGGGCAGGGCCTAACAAGGAAACCTGGGCCCTCCAAGCCAGG TTGAGGTCTGGTAACAGAATGCCAGGAAGGGGGCCTGGAAGACCACCTGCCCCGGCCCCTCTCCTGCAGGGGCCCCACACAGGCATGAGG GATGGCCCGGCCAAAGTCTAGGCAGAAGCCTCCTATAACAAAGGGTGGTGTGGCCTGGGCATTGGAGTCAATAAATTATGGTCAGAAAAT >In-frame_COPE_ENST00000349893_chr19_19023793_-_TMED1_ENST00000591695_chr19_10946029_-_703nt TGAGAAGACAGCGAAATGGCGCCTCCGGCCCCCGGCCCGGCCTCCGGCGGCTCCGGGGAGGTAGACGAGCTGTTCGACGTAAAGAACGCC TTCTACATCGGCAGCTACCAGCAGTGCATAAACGAGGCGCAGCGGGTGAAGCTATCAAGCCCAGAGAGAGACGTGGAGAGGGACGTCTTC CTGTATAGAGCGTACCTGGCGCAGGTGATCGGAGGTGCTGGACTGGACGTGGACTTCACGCTGGAGAGCCCTCAGGGCGTGCTGTTGGTC AGCGAGTCCCGCAAGGCTGATGGGGTACACACGAGTCCATTGAGACCATGCGGACCCGGCTGGAGCGCAGCATCCAGATGCTCACGCTAC TGCGGGCCTTCGAGGCACGTGACCGCAACCTGCAAGAGGGCAACTTGGAGCGGGTCAACTTCTGGTCAGCTGTCAACGTGGCGGTGCTGC TGCTGGTGGCTGTGCTGCAGGTCTGCACGCTCAAGCGCTTCTTCCAGGACAAGCGCCCGGTGCCCACGTAGCCCCTGCCATGGAAGGAAG AACGGGACAAAGGAGGGGCAGCAGGGTGTGTGCATATGAGACTTGGGGGTCCCTCCCCAATTTTAGTTTCCTGCCAAAACGGGAGTGTGC >In-frame_COPE_ENST00000600932_chr19_19023793_-_TMED1_ENST00000214869_chr19_10946029_-_1279nt TCAGGAAGAGGAGCTGGTGAGAAGACAGCGAAATGGCGCCTCCGGCCCCCGGCCCGGCCTCCGGCGGCTCCGGGGAGGTAGACGAGCTGT TCGACGTAAAGAACGCCTTCTACATCGGCAGCTACCAGCAGTGCATAAACGAGGCGCAGCGGGTGAAGCTATCAAGCCCAGAGAGAGACG TGGAGAGGGACGTCTTCCTGTATAGAGCGTACCTGGCGCAGGTGATCGGAGGTGCTGGACTGGACGTGGACTTCACGCTGGAGAGCCCTC AGGGCGTGCTGTTGGTCAGCGAGTCCCGCAAGGCTGATGGGGTACACACGGTGGAGCCAACGGAGGCCGGGGACTACAAGCTGTGCTTTG ACAACTCCTTCAGCACCATCTCCGAGAAGCTGGTGTTCTTTGAACTGATCTTTGACAGCCTCCAGGATGACGAGGAGGTCGAAGGATGGG CAGAGGCTGTGGAGCCCGAGGAGATGCTGGATGTTAAAATGGAGGACATCAAGGAGTCCATTGAGACCATGCGGACCCGGCTGGAGCGCA GCATCCAGATGCTCACGCTACTGCGGGCCTTCGAGGCACGTGACCGCAACCTGCAAGAGGGCAACTTGGAGCGGGTCAACTTCTGGTCAG CTGTCAACGTGGCGGTGCTGCTGCTGGTGGCTGTGCTGCAGGTCTGCACGCTCAAGCGCTTCTTCCAGGACAAGCGCCCGGTGCCCACGT AGCCCCTGCCATGGAAGGAAGAACGGGACAAAGGAGGGGCAGCAGGGTGTGTGCATATGAGACTTGGGGGTCCCTCCCCAATTTTAGTTT CCTGCCAAAACGGGAGTGTGCAGTCAGGGCCTGCGGTCTGGCCCCATGAGTCTCCTTCCGTCCTCAGCGGGCAGGGAACACCTCTGGCTT GTAGAAGGGACGGCTCAGTGGCTGCACCGACGGTCCTGGAAATCTCACATGGTGGGCACTGCAGCGTTGGAACGTGAGCCTCGGATTTCC TGGCCCCTCTACTGTAAATGTGCCTTAGCCTAAGCCTCCCATCCTGTGTTAGCGTTGCCTGGTGCGGGGCAGGGCCTAACAAGGAAACCT GGGCCCTCCAAGCCAGGTTGAGGTCTGGTAACAGAATGCCAGGAAGGGGGCCTGGAAGACCACCTGCCCCGGCCCCTCTCCTGCAGGGGC CCCACACAGGCATGAGGGATGGCCCGGCCAAAGTCTAGGCAGAAGCCTCCTATAACAAAGGGTGGTGTGGCCTGGGCATTGGAGTCAATA >In-frame_COPE_ENST00000600932_chr19_19023793_-_TMED1_ENST00000591695_chr19_10946029_-_720nt TCAGGAAGAGGAGCTGGTGAGAAGACAGCGAAATGGCGCCTCCGGCCCCCGGCCCGGCCTCCGGCGGCTCCGGGGAGGTAGACGAGCTGT TCGACGTAAAGAACGCCTTCTACATCGGCAGCTACCAGCAGTGCATAAACGAGGCGCAGCGGGTGAAGCTATCAAGCCCAGAGAGAGACG TGGAGAGGGACGTCTTCCTGTATAGAGCGTACCTGGCGCAGGTGATCGGAGGTGCTGGACTGGACGTGGACTTCACGCTGGAGAGCCCTC AGGGCGTGCTGTTGGTCAGCGAGTCCCGCAAGGCTGATGGGGTACACACGAGTCCATTGAGACCATGCGGACCCGGCTGGAGCGCAGCAT CCAGATGCTCACGCTACTGCGGGCCTTCGAGGCACGTGACCGCAACCTGCAAGAGGGCAACTTGGAGCGGGTCAACTTCTGGTCAGCTGT CAACGTGGCGGTGCTGCTGCTGGTGGCTGTGCTGCAGGTCTGCACGCTCAAGCGCTTCTTCCAGGACAAGCGCCCGGTGCCCACGTAGCC CCTGCCATGGAAGGAAGAACGGGACAAAGGAGGGGCAGCAGGGTGTGTGCATATGAGACTTGGGGGTCCCTCCCCAATTTTAGTTTCCTG CCAAAACGGGAGTGTGCAGTCAGGGCCTGCGGTCTGGCCCCATGAGTCTCCTTCCGTCCTCAGCGGGCAGGGAACACCTCTGGCTTGTAG >In-frame_COPE_ENST00000351079_chr19_19023793_-_TMED1_ENST00000214869_chr19_10946029_-_1274nt AAGAGGAGCTGGTGAGAAGACAGCGAAATGGCGCCTCCGGCCCCCGGCCCGGCCTCCGGCGGCTCCGGGGAGGTAGACGAGCTGTTCGAC GTAAAGAACGCCTTCTACATCGGCAGCTACCAGCAGTGCATAAACGAGGCGCAGCGGGTGAAGCTATCAAGCCCAGAGAGAGACGTGGAG AGGGACGTCTTCCTGTATAGAGCGTACCTGGCGCAGGTGATCGGAGGTGCTGGACTGGACGTGGACTTCACGCTGGAGAGCCCTCAGGGC GTGCTGTTGGTCAGCGAGTCCCGCAAGGCTGATGGGGTACACACGGTGGAGCCAACGGAGGCCGGGGACTACAAGCTGTGCTTTGACAAC TCCTTCAGCACCATCTCCGAGAAGCTGGTGTTCTTTGAACTGATCTTTGACAGCCTCCAGGATGACGAGGAGGTCGAAGGATGGGCAGAG GCTGTGGAGCCCGAGGAGATGCTGGATGTTAAAATGGAGGACATCAAGGAGTCCATTGAGACCATGCGGACCCGGCTGGAGCGCAGCATC CAGATGCTCACGCTACTGCGGGCCTTCGAGGCACGTGACCGCAACCTGCAAGAGGGCAACTTGGAGCGGGTCAACTTCTGGTCAGCTGTC AACGTGGCGGTGCTGCTGCTGGTGGCTGTGCTGCAGGTCTGCACGCTCAAGCGCTTCTTCCAGGACAAGCGCCCGGTGCCCACGTAGCCC CTGCCATGGAAGGAAGAACGGGACAAAGGAGGGGCAGCAGGGTGTGTGCATATGAGACTTGGGGGTCCCTCCCCAATTTTAGTTTCCTGC CAAAACGGGAGTGTGCAGTCAGGGCCTGCGGTCTGGCCCCATGAGTCTCCTTCCGTCCTCAGCGGGCAGGGAACACCTCTGGCTTGTAGA AGGGACGGCTCAGTGGCTGCACCGACGGTCCTGGAAATCTCACATGGTGGGCACTGCAGCGTTGGAACGTGAGCCTCGGATTTCCTGGCC CCTCTACTGTAAATGTGCCTTAGCCTAAGCCTCCCATCCTGTGTTAGCGTTGCCTGGTGCGGGGCAGGGCCTAACAAGGAAACCTGGGCC CTCCAAGCCAGGTTGAGGTCTGGTAACAGAATGCCAGGAAGGGGGCCTGGAAGACCACCTGCCCCGGCCCCTCTCCTGCAGGGGCCCCAC ACAGGCATGAGGGATGGCCCGGCCAAAGTCTAGGCAGAAGCCTCCTATAACAAAGGGTGGTGTGGCCTGGGCATTGGAGTCAATAAATTA >In-frame_COPE_ENST00000351079_chr19_19023793_-_TMED1_ENST00000591695_chr19_10946029_-_715nt AAGAGGAGCTGGTGAGAAGACAGCGAAATGGCGCCTCCGGCCCCCGGCCCGGCCTCCGGCGGCTCCGGGGAGGTAGACGAGCTGTTCGAC GTAAAGAACGCCTTCTACATCGGCAGCTACCAGCAGTGCATAAACGAGGCGCAGCGGGTGAAGCTATCAAGCCCAGAGAGAGACGTGGAG AGGGACGTCTTCCTGTATAGAGCGTACCTGGCGCAGGTGATCGGAGGTGCTGGACTGGACGTGGACTTCACGCTGGAGAGCCCTCAGGGC GTGCTGTTGGTCAGCGAGTCCCGCAAGGCTGATGGGGTACACACGAGTCCATTGAGACCATGCGGACCCGGCTGGAGCGCAGCATCCAGA TGCTCACGCTACTGCGGGCCTTCGAGGCACGTGACCGCAACCTGCAAGAGGGCAACTTGGAGCGGGTCAACTTCTGGTCAGCTGTCAACG TGGCGGTGCTGCTGCTGGTGGCTGTGCTGCAGGTCTGCACGCTCAAGCGCTTCTTCCAGGACAAGCGCCCGGTGCCCACGTAGCCCCTGC CATGGAAGGAAGAACGGGACAAAGGAGGGGCAGCAGGGTGTGTGCATATGAGACTTGGGGGTCCCTCCCCAATTTTAGTTTCCTGCCAAA |
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FusionGenePPI for COPE_TMED1 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
COPE | COPA, COPB2, COPG1, ARF1, COPB1, RCHY1, UBC, SACM1L, TMED10, COPE, LMAN1, ARCN1, COPG2, BRCA1, ECT2, MDC1, PAXIP1, VCP, FN1, NPM1, BAG3, SEPT2, KIF5B, RABGAP1, GPRASP2, NUDCD1, EFHC2, SHMT2, NTRK1, MCM5, SF3B2, SRSF2, SRSF3, STAG2, SULT1C4, TRIP10, DTNBP1, MCFD2, OSBPL9, PSMD12, SF3B3, SF3B4, SF3B5, HERC2, TCTN3, TMEM17, XPO1, MYH6, XRCC3, FAM210A, PPM1G, WBP2, DLD, HSD17B10, VDAC1, TRIM25, CCND2 | TMED1 | IL1RL1, SMAD3, TMED9, SEC23B, UBL4A, TMED10, CHST8, VAPA, JUN, SPPL2B, TMED2, FGF3, CDK5RAP3, JPH4, TPTE, IQCB1, EXOC1, EXOC3 |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for COPE_TMED1 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for COPE_TMED1 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |