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Fusion gene ID: 7924 |
FusionGeneSummary for COL2A1_ZNF609 |
Fusion gene summary |
Fusion gene information | Fusion gene name: COL2A1_ZNF609 | Fusion gene ID: 7924 | Hgene | Tgene | Gene symbol | COL2A1 | ZNF609 | Gene ID | 1280 | 23060 |
Gene name | collagen type II alpha 1 chain | zinc finger protein 609 | |
Synonyms | ANFH|AOM|COL11A3|SEDC|STL1 | - | |
Cytomap | 12q13.11 | 15q22.31 | |
Type of gene | protein-coding | protein-coding | |
Description | collagen alpha-1(II) chainalpha-1 type II collagenarthroophthalmopathy, progressive (Stickler syndrome)cartilage collagenchondrocalcincollagen II, alpha-1 polypeptidecollagen, type II, alpha 1 | zinc finger protein 609 | |
Modification date | 20180523 | 20180519 | |
UniProtAcc | P02458 | O15014 | |
Ensembl transtripts involved in fusion gene | ENST00000380518, ENST00000493991, ENST00000337299, | ENST00000326648, ENST00000416172, ENST00000559364, | |
Fusion gene scores | * DoF score | 4 X 5 X 2=40 | 7 X 9 X 3=189 |
# samples | 5 | 10 | |
** MAII score | log2(5/40*10)=0.321928094887362 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(10/189*10)=-0.918386234446348 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: COL2A1 [Title/Abstract] AND ZNF609 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | ZNF609 | GO:2000291 | regulation of myoblast proliferation | 28344082 |
Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | PRAD | TCGA-EJ-5503-01A | COL2A1 | chr12 | 48398020 | - | ZNF609 | chr15 | 64915026 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000380518 | ENST00000326648 | COL2A1 | chr12 | 48398020 | - | ZNF609 | chr15 | 64915026 | + |
5CDS-intron | ENST00000380518 | ENST00000416172 | COL2A1 | chr12 | 48398020 | - | ZNF609 | chr15 | 64915026 | + |
5CDS-intron | ENST00000380518 | ENST00000559364 | COL2A1 | chr12 | 48398020 | - | ZNF609 | chr15 | 64915026 | + |
intron-3CDS | ENST00000493991 | ENST00000326648 | COL2A1 | chr12 | 48398020 | - | ZNF609 | chr15 | 64915026 | + |
intron-intron | ENST00000493991 | ENST00000416172 | COL2A1 | chr12 | 48398020 | - | ZNF609 | chr15 | 64915026 | + |
intron-intron | ENST00000493991 | ENST00000559364 | COL2A1 | chr12 | 48398020 | - | ZNF609 | chr15 | 64915026 | + |
In-frame | ENST00000337299 | ENST00000326648 | COL2A1 | chr12 | 48398020 | - | ZNF609 | chr15 | 64915026 | + |
5CDS-intron | ENST00000337299 | ENST00000416172 | COL2A1 | chr12 | 48398020 | - | ZNF609 | chr15 | 64915026 | + |
5CDS-intron | ENST00000337299 | ENST00000559364 | COL2A1 | chr12 | 48398020 | - | ZNF609 | chr15 | 64915026 | + |
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FusionProtFeatures for COL2A1_ZNF609 |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
COL2A1 | ZNF609 |
Transcription factor, which activates RAG1, and possiblyRAG2, transcription. Through the regulation of RAG1/2 expression,may regulate thymocyte maturation. Along with NIPBL and themultiprotein complex Integrator, promotes cortical neuronmigration during brain development by regulating the transcriptionof crucial genes in this process. Preferentially binds promoterscontaining paused RNA polymerase II. Up-regulates the expressionof SEMA3A, NRP1, PLXND1 and GABBR2 genes, among others.{ECO:0000250|UniProtKB:Q8BZ47}. Isoform 2: Involved in the regulation of myoblastproliferation during myogenesis. {ECO:0000269|PubMed:28344082}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | >ZNF609 | chr12:48398020 | chr15:64915026 | ENST00000326648 | + | 0 | 9 | 1333_1336 | 249 | 2578 | Compositional bias | Note=Poly-Gly |
Tgene | >ZNF609 | chr12:48398020 | chr15:64915026 | ENST00000326648 | + | 0 | 9 | 1366_1371 | 249 | 2578 | Compositional bias | Note=Poly-His |
Tgene | >ZNF609 | chr12:48398020 | chr15:64915026 | ENST00000326648 | + | 0 | 9 | 725_735 | 249 | 2578 | Compositional bias | Note=Poly-Lys |
Tgene | >ZNF609 | chr12:48398020 | chr15:64915026 | ENST00000326648 | + | 0 | 9 | 952_955 | 249 | 2578 | Compositional bias | Note=Poly-Ser |
Tgene | >ZNF609 | chr12:48398020 | chr15:64915026 | ENST00000326648 | + | 0 | 9 | 495_520 | 249 | 2578 | Zinc finger | C2H2-type |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | >COL2A1 | chr12:48398020 | chr15:64915026 | ENST00000337299 | - | 1 | 53 | 1253_1487 | 28 | 1419 | Domain | Fibrillar collagen NC1 |
Hgene | >COL2A1 | chr12:48398020 | chr15:64915026 | ENST00000337299 | - | 1 | 53 | 32_90 | 28 | 1419 | Domain | VWFC |
Hgene | >COL2A1 | chr12:48398020 | chr15:64915026 | ENST00000380518 | - | 1 | 54 | 1253_1487 | 28 | 1488 | Domain | Fibrillar collagen NC1 |
Hgene | >COL2A1 | chr12:48398020 | chr15:64915026 | ENST00000380518 | - | 1 | 54 | 32_90 | 28 | 1488 | Domain | VWFC |
Hgene | >COL2A1 | chr12:48398020 | chr15:64915026 | ENST00000337299 | - | 1 | 53 | 1215_1241 | 28 | 1419 | Region | Note=Nonhelical region (C-terminal) |
Hgene | >COL2A1 | chr12:48398020 | chr15:64915026 | ENST00000337299 | - | 1 | 53 | 201_1214 | 28 | 1419 | Region | Note=Triple-helical region |
Hgene | >COL2A1 | chr12:48398020 | chr15:64915026 | ENST00000380518 | - | 1 | 54 | 1215_1241 | 28 | 1488 | Region | Note=Nonhelical region (C-terminal) |
Hgene | >COL2A1 | chr12:48398020 | chr15:64915026 | ENST00000380518 | - | 1 | 54 | 201_1214 | 28 | 1488 | Region | Note=Triple-helical region |
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FusionGeneSequence for COL2A1_ZNF609 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_COL2A1_ENST00000380518_chr12_48398020_-_ZNF609_ENST00000326648_chr15_64915026_+_1191aa MIRLGAPQTLVLLTLLVAAVLRCQGQDVHGVPCFHTSSAANTPFGASGQQXHLISLXADHGSYPISWGQHMXCGSGHRAXVLGPLXTWNX RQPXRHRVAGNRRWDVGGKCNVEEQDICRYTPXLHTTXLGTPKVLXLPDQXPGNAQWPGXRQTHASQQXYTCQXDSHSLXQQRDQXQQQN PGRSQXQRPSGQPEFFRAPPTCQQHFXGCQGQPFLSXXAEKQTPFRHGAEFXLRGLQREQACPYXFHGLSHWPPSWDKGRTHCSGQKLPL PRPNXLSPPKLQQEVQAHQWTXVPPSSCPYRXXQQAGSGWGQXVRRGTYSPCRSWELQRCICLTKRFLVPCPLSYPQSSTCRAPXPFSFK QIQHKRPLXEKVEWGRGHRPWGLIQXWLXXWTLSDGXNKQXCLXFFRKEVYGKRKMXKTLXFKTXKDSFQEPKVSPSHCPCHPPTANLHL PDSHLHSSEPRLFLRLDRHSGTSHAQQSPTQAHSAQAHCYGRTFHSQPCLDSSQGQEKERQKKEGIFKGTXKSSDPWEGVSSRGRQKPIQ GIFRRWDENGGAPKWLIRPPPKPTGXHQGXSRQDLQFHGQCPQPFHWRQXPPXKHYPYSAPDSLTCGDPEWSXSQLSQNQQPCILXHLXC WGGWGGQGRQCQIKGRRTVGXRRGXENSFSPSASEQRLTILPRLXELLFSKLCTVQPWGSEPQQPGRSGEPGPEDKKGXGTXEHRRESEE RYLXRKEARAEQFQSAALGHPAASQYVHAVPVLQPVCLCTPLWLQRPELPHPPSEHXHGLPAAVRRTAETPELRAAAAGSGQEGRDGPEG AGGSTQGRVEAKAVNSTNSHQGPQPDRPGEIRTWQGQGARGXPSQISHHSQVRXLFKTPGPGPXRPXSEAEXCQPPKQGGLXGQDRCXVW STGRDGSNTLVPTGGRAPDVDICLSCQVLRHQVRGXAVEGGAGPQIEGGKESEXGLCPQGRWEGKHKXXLQAAHVRGVSPWEQGAPAKCP CACVLPTYPAPVLHPLHARLFLQSVLRPQPPQLPEHACCDDAELPRFLPAFQLLFFPIWQQGLRWXRCXQGTSQPQCDLXIQLRVQSPGH LAAACQSLQEQVSHDKXXNFSGERSRRLWGGWGWWQLXQRRGSKWGXTECXPAPHLSFPAPDVHTPPPPPLGVLIAPSTVQLTLCSRAFF >In-frame_COL2A1_ENST00000337299_chr12_48398020_-_ZNF609_ENST00000326648_chr15_64915026_+_1191aa MIRLGAPQTLVLLTLLVAAVLRCQGQDVHGVPCFHTSSAANTPFGASGQQXHLISLXADHGSYPISWGQHMXCGSGHRAXVLGPLXTWNX RQPXRHRVAGNRRWDVGGKCNVEEQDICRYTPXLHTTXLGTPKVLXLPDQXPGNAQWPGXRQTHASQQXYTCQXDSHSLXQQRDQXQQQN PGRSQXQRPSGQPEFFRAPPTCQQHFXGCQGQPFLSXXAEKQTPFRHGAEFXLRGLQREQACPYXFHGLSHWPPSWDKGRTHCSGQKLPL PRPNXLSPPKLQQEVQAHQWTXVPPSSCPYRXXQQAGSGWGQXVRRGTYSPCRSWELQRCICLTKRFLVPCPLSYPQSSTCRAPXPFSFK QIQHKRPLXEKVEWGRGHRPWGLIQXWLXXWTLSDGXNKQXCLXFFRKEVYGKRKMXKTLXFKTXKDSFQEPKVSPSHCPCHPPTANLHL PDSHLHSSEPRLFLRLDRHSGTSHAQQSPTQAHSAQAHCYGRTFHSQPCLDSSQGQEKERQKKEGIFKGTXKSSDPWEGVSSRGRQKPIQ GIFRRWDENGGAPKWLIRPPPKPTGXHQGXSRQDLQFHGQCPQPFHWRQXPPXKHYPYSAPDSLTCGDPEWSXSQLSQNQQPCILXHLXC WGGWGGQGRQCQIKGRRTVGXRRGXENSFSPSASEQRLTILPRLXELLFSKLCTVQPWGSEPQQPGRSGEPGPEDKKGXGTXEHRRESEE RYLXRKEARAEQFQSAALGHPAASQYVHAVPVLQPVCLCTPLWLQRPELPHPPSEHXHGLPAAVRRTAETPELRAAAAGSGQEGRDGPEG AGGSTQGRVEAKAVNSTNSHQGPQPDRPGEIRTWQGQGARGXPSQISHHSQVRXLFKTPGPGPXRPXSEAEXCQPPKQGGLXGQDRCXVW STGRDGSNTLVPTGGRAPDVDICLSCQVLRHQVRGXAVEGGAGPQIEGGKESEXGLCPQGRWEGKHKXXLQAAHVRGVSPWEQGAPAKCP CACVLPTYPAPVLHPLHARLFLQSVLRPQPPQLPEHACCDDAELPRFLPAFQLLFFPIWQQGLRWXRCXQGTSQPQCDLXIQLRVQSPGH LAAACQSLQEQVSHDKXXNFSGERSRRLWGGWGWWQLXQRRGSKWGXTECXPAPHLSFPAPDVHTPPPPPLGVLIAPSTVQLTLCSRAFF |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_COL2A1_ENST00000380518_chr12_48398020_-_ZNF609_ENST00000326648_chr15_64915026_+_3574nt ATGATTCGCCTCGGGGCTCCCCAGACGCTGGTGCTGCTGACGCTGCTCGTCGCCGCTGTCCTTCGGTGTCAGGGCCAGGATGTCCATGGA GTCCCCTGTTTCCACACCAGCAGTGCTGCCAATACACCTTTTGGTGCCAGTGGTCAACAATGACATCTCATCTCCCTGTGAGCAGATCAT GGTTCGTACCCGATCAGTTGGGGTCAACACATGTGATGTGGCTCTGGCCACAGAGCCTGAGTGCTTGGGCCCCTGTGAACCTGGAACTAG CGTCAACCTTGAAGGCATCGTGTGGCAGGAAACAGAAGATGGGATGTTGGTGGTAAATGTAACGTGGAGGAACAAGACATATGTAGGTAC ACTCCTTGACTGCACACGACATGATTGGGCACCCCCAAGGTTCTGTGACTCCCCGACCAGTGACCTGGAAATGCGCAATGGCCGGGGTAG AGGCAAACGCATGCGTCCCAACAGTAATACACCTGTCAATGAGACAGCCACAGCCTCTGACAGCAAAGGGACCAGTAACAGCAGCAAAAC CCGGGCAGGAGCCAATAGCAAAGGCCGTCGGGGCAGCCAGAATTCTTCAGAGCACCGCCCACCTGCCAGCAGCACTTCTGAGGATGTCAA GGCCAGCCCTTCCTCAGCTAATAAGCGGAAAAACAAACCCCTTTCAGACATGGAGCTGAATTCTAGCTCAGAGGACTCCAAAGGGAGCAA GCGTGTCCGTACTAATTCCATGGGCTCAGCCACTGGCCCCCTTCCTGGGACAAAGGTAGAACCCACTGTTCTGGACAGAAACTGCCCCTC CCCCGTCCTAATTGACTGTCCCCACCCAAACTGCAACAAGAAGTACAAGCACATCAATGGACTTAAGTACCACCAAGCTCATGCCCATAC AGATGATGACAGCAAGCCGGAAGCGGATGGGGACAGTGAGTACGGAGAGGAACCTATTCTCCATGCAGATCTTGGGAGCTGCAACGGTGC ATCTGTCTCACAAAAAGGTTCCTTGTCCCCTGCCCGCTCAGCTACCCCCAAAGTTCGACTTGTAGAGCCCCATAGCCCTTCTCCTTCAAG CAAATTCAGCACAAAAGGCCTCTGTAAGAAAAAGTTGAGTGGGGAAGGGGACACAGACCTTGGGGCCTTATCCAATGATGGCTCTGATGA TGGACCCTCAGTGATGGATGAAACAAGCAATGATGCCTTTGATTCTTTAGAAAGGAAGTGTATGGAAAAAGAAAAATGTAAAAAACCCTC TAGTTTAAAACCTGAAAAGATTCCTTCCAAGAGCCTAAAGTCAGCCCGTCCCATTGCCCCTGCCATCCCCCCACAGCAAATCTACACCTT CCAGACAGCCACCTTCACAGCAGCGAGCCCAGGCTCTTCCTCAGGCTTGACCGCCACAGTGGCACAAGCCATGCCCAACAGTCCCCAACT CAAGCCCATTCAGCCCAAGCCCACTGTTATGGGAGAACCTTTCACAGTCAACCCTGCCTTGACTCCAGCCAAGGACAAGAAAAAGAAAGA CAAAAAAAAGAAGGAATCTTCAAAGGAACTTGAAAGTCCTCTGACCCCTGGGAAGGTGTGTCGAGCAGAGGAAGGCAAAAGCCCATTCAG GGAATCTTCAGGAGATGGGATGAAAATGGAGGGGCTCCTAAATGGCTCATCAGACCCCCACCAAAGCCGACTGGCTAGCATCAAGGCTGA AGCCGACAAGATCTACAGTTTCACGGACAATGCCCCCAGCCCTTCCATTGGAGGCAGTAGCCGCCTTGAAAACACTACCCCTACTCAGCC CCTGACTCCCTTACATGTGGTGACCCAGAATGGAGCTGAAGCCAGCTCAGTCAAAACCAACAGCCCTGCATACTCTGACATCTCTGATGC TGGGGAGGATGGGGAGGGCAAGGTAGACAGTGTCAAATCAAAGGACGCCGAACAGTTGGTTAAAGAAGGGGCTAAGAAAACTCTTTTTCC CCCTCAGCCTCAGAGCAAAGACTCACCATATTACCAAGGCTTTGAGAGTTACTATTCTCCAAGTTATGCACAGTCCAGCCCTGGGGCTCT GAACCCCAGCAGCCAGGCAGGAGTGGAGAGCCAGGCCCTGAAGACAAAAAGGGATGAGGAACCTGAGAGCATAGAAGGGAAAGTGAAGAA CGATATCTGTGAAGAAAAGAAGCCCGAGCTGAGCAGTTCCAGTCAGCAGCCCTCGGTCATCCAGCAGCGTCCCAATATGTACATGCAGTC CCTGTACTACAACCAGTATGCCTATGTACCCCCCTATGGCTACAGCGACCAGAGTTACCACACCCACCTTCTGAGCACTAACACGGCTTA CCGGCAGCAGTACGAAGAACAGCAGAAACGCCAGAGCTTAGAGCAGCAGCAGCGGGGAGTGGACAAGAAGGCAGAGATGGGCCTGAAGGA GCGGGAGGCAGCACTCAAGGAAGAGTGGAAGCAAAAGCCGTCAATTCCACCAACTCTCACCAAGGCCCCCAGCCTGACAGACCTGGTGAA ATCAGGACCTGGCAAGGCCAAGGAGCCAGGGGCTGACCCAGCCAAATCAGTCATCATTCCCAAGTTAGATGACTCTTCAAAACTCCCGGG CCAGGCCCCTGAAGGCCTTAAAGTGAAGCTGAGTGATGCCAGCCACCTAAGCAAGGAGGCCTCTGAGGCCAAGACAGGTGCTGAGTGTGG TCGACAGGCAGAGATGGATCCAATACTCTGGTACCGACAGGAGGCAGAGCCCCGGATGTGGACATATGTTTATCCTGCCAAGTACTCAGA CATCAAGTCAGAGGATGAGCGGTGGAAGGAGGAGCGGGACCGCAAATTGAAGGAGGAAAGGAGTCGGAGTAAGGACTCTGTCCCCAAGGA AGATGGGAAGGAAAGCACAAGTAGTGACTGCAAGCTGCCCACGTCAGAGGAGTCTCGCCTTGGGAGCAAGGAGCCCCGGCCAAGTGTCCA TGTGCCTGTGTCCTCCCCACTTACCCAGCACCAGTCCTACATCCCCTACATGCACGGCTATTCCTACAGTCAGTCCTACGACCCCAACCA CCCCAGCTACCGGAGCATGCCTGCTGTGATGATGCAGAACTACCCAGGTTCCTACCTGCCTTCCAGCTACTCTTTTTCCCCATATGGCAG CAAGGTCTCAGGTGGTGAAGATGCTGACAAGGCACGAGCCAGCCCCAGTGTGACTTGTAAATCCAGCTCAGAGTCCAAAGCCCTGGACAT CTTGCAGCAGCATGCCAGTCACTACAAGAGCAAGTCTCCCACGATAAGTGATAAAACTTCTCAGGAGAGAGATCGAGGAGGCTGTGGGGT GGTTGGGGGTGGTGGCAGCTGTAGCAGCGTCGGGGGAGCAAGTGGGGGTGAACGGAGTGTTGACCGGCCCCGCACCTCTCCTTCCCAGCG CCTGATGTCCACACACCACCACCACCACCACTTGGGGTACTCATTGCTCCCAGCACAGTACAACTTACCCTATGCAGCAGGGCTTTCTTC >In-frame_COL2A1_ENST00000337299_chr12_48398020_-_ZNF609_ENST00000326648_chr15_64915026_+_3574nt ATGATTCGCCTCGGGGCTCCCCAGACGCTGGTGCTGCTGACGCTGCTCGTCGCCGCTGTCCTTCGGTGTCAGGGCCAGGATGTCCATGGA GTCCCCTGTTTCCACACCAGCAGTGCTGCCAATACACCTTTTGGTGCCAGTGGTCAACAATGACATCTCATCTCCCTGTGAGCAGATCAT GGTTCGTACCCGATCAGTTGGGGTCAACACATGTGATGTGGCTCTGGCCACAGAGCCTGAGTGCTTGGGCCCCTGTGAACCTGGAACTAG CGTCAACCTTGAAGGCATCGTGTGGCAGGAAACAGAAGATGGGATGTTGGTGGTAAATGTAACGTGGAGGAACAAGACATATGTAGGTAC ACTCCTTGACTGCACACGACATGATTGGGCACCCCCAAGGTTCTGTGACTCCCCGACCAGTGACCTGGAAATGCGCAATGGCCGGGGTAG AGGCAAACGCATGCGTCCCAACAGTAATACACCTGTCAATGAGACAGCCACAGCCTCTGACAGCAAAGGGACCAGTAACAGCAGCAAAAC CCGGGCAGGAGCCAATAGCAAAGGCCGTCGGGGCAGCCAGAATTCTTCAGAGCACCGCCCACCTGCCAGCAGCACTTCTGAGGATGTCAA GGCCAGCCCTTCCTCAGCTAATAAGCGGAAAAACAAACCCCTTTCAGACATGGAGCTGAATTCTAGCTCAGAGGACTCCAAAGGGAGCAA GCGTGTCCGTACTAATTCCATGGGCTCAGCCACTGGCCCCCTTCCTGGGACAAAGGTAGAACCCACTGTTCTGGACAGAAACTGCCCCTC CCCCGTCCTAATTGACTGTCCCCACCCAAACTGCAACAAGAAGTACAAGCACATCAATGGACTTAAGTACCACCAAGCTCATGCCCATAC AGATGATGACAGCAAGCCGGAAGCGGATGGGGACAGTGAGTACGGAGAGGAACCTATTCTCCATGCAGATCTTGGGAGCTGCAACGGTGC ATCTGTCTCACAAAAAGGTTCCTTGTCCCCTGCCCGCTCAGCTACCCCCAAAGTTCGACTTGTAGAGCCCCATAGCCCTTCTCCTTCAAG CAAATTCAGCACAAAAGGCCTCTGTAAGAAAAAGTTGAGTGGGGAAGGGGACACAGACCTTGGGGCCTTATCCAATGATGGCTCTGATGA TGGACCCTCAGTGATGGATGAAACAAGCAATGATGCCTTTGATTCTTTAGAAAGGAAGTGTATGGAAAAAGAAAAATGTAAAAAACCCTC TAGTTTAAAACCTGAAAAGATTCCTTCCAAGAGCCTAAAGTCAGCCCGTCCCATTGCCCCTGCCATCCCCCCACAGCAAATCTACACCTT CCAGACAGCCACCTTCACAGCAGCGAGCCCAGGCTCTTCCTCAGGCTTGACCGCCACAGTGGCACAAGCCATGCCCAACAGTCCCCAACT CAAGCCCATTCAGCCCAAGCCCACTGTTATGGGAGAACCTTTCACAGTCAACCCTGCCTTGACTCCAGCCAAGGACAAGAAAAAGAAAGA CAAAAAAAAGAAGGAATCTTCAAAGGAACTTGAAAGTCCTCTGACCCCTGGGAAGGTGTGTCGAGCAGAGGAAGGCAAAAGCCCATTCAG GGAATCTTCAGGAGATGGGATGAAAATGGAGGGGCTCCTAAATGGCTCATCAGACCCCCACCAAAGCCGACTGGCTAGCATCAAGGCTGA AGCCGACAAGATCTACAGTTTCACGGACAATGCCCCCAGCCCTTCCATTGGAGGCAGTAGCCGCCTTGAAAACACTACCCCTACTCAGCC CCTGACTCCCTTACATGTGGTGACCCAGAATGGAGCTGAAGCCAGCTCAGTCAAAACCAACAGCCCTGCATACTCTGACATCTCTGATGC TGGGGAGGATGGGGAGGGCAAGGTAGACAGTGTCAAATCAAAGGACGCCGAACAGTTGGTTAAAGAAGGGGCTAAGAAAACTCTTTTTCC CCCTCAGCCTCAGAGCAAAGACTCACCATATTACCAAGGCTTTGAGAGTTACTATTCTCCAAGTTATGCACAGTCCAGCCCTGGGGCTCT GAACCCCAGCAGCCAGGCAGGAGTGGAGAGCCAGGCCCTGAAGACAAAAAGGGATGAGGAACCTGAGAGCATAGAAGGGAAAGTGAAGAA CGATATCTGTGAAGAAAAGAAGCCCGAGCTGAGCAGTTCCAGTCAGCAGCCCTCGGTCATCCAGCAGCGTCCCAATATGTACATGCAGTC CCTGTACTACAACCAGTATGCCTATGTACCCCCCTATGGCTACAGCGACCAGAGTTACCACACCCACCTTCTGAGCACTAACACGGCTTA CCGGCAGCAGTACGAAGAACAGCAGAAACGCCAGAGCTTAGAGCAGCAGCAGCGGGGAGTGGACAAGAAGGCAGAGATGGGCCTGAAGGA GCGGGAGGCAGCACTCAAGGAAGAGTGGAAGCAAAAGCCGTCAATTCCACCAACTCTCACCAAGGCCCCCAGCCTGACAGACCTGGTGAA ATCAGGACCTGGCAAGGCCAAGGAGCCAGGGGCTGACCCAGCCAAATCAGTCATCATTCCCAAGTTAGATGACTCTTCAAAACTCCCGGG CCAGGCCCCTGAAGGCCTTAAAGTGAAGCTGAGTGATGCCAGCCACCTAAGCAAGGAGGCCTCTGAGGCCAAGACAGGTGCTGAGTGTGG TCGACAGGCAGAGATGGATCCAATACTCTGGTACCGACAGGAGGCAGAGCCCCGGATGTGGACATATGTTTATCCTGCCAAGTACTCAGA CATCAAGTCAGAGGATGAGCGGTGGAAGGAGGAGCGGGACCGCAAATTGAAGGAGGAAAGGAGTCGGAGTAAGGACTCTGTCCCCAAGGA AGATGGGAAGGAAAGCACAAGTAGTGACTGCAAGCTGCCCACGTCAGAGGAGTCTCGCCTTGGGAGCAAGGAGCCCCGGCCAAGTGTCCA TGTGCCTGTGTCCTCCCCACTTACCCAGCACCAGTCCTACATCCCCTACATGCACGGCTATTCCTACAGTCAGTCCTACGACCCCAACCA CCCCAGCTACCGGAGCATGCCTGCTGTGATGATGCAGAACTACCCAGGTTCCTACCTGCCTTCCAGCTACTCTTTTTCCCCATATGGCAG CAAGGTCTCAGGTGGTGAAGATGCTGACAAGGCACGAGCCAGCCCCAGTGTGACTTGTAAATCCAGCTCAGAGTCCAAAGCCCTGGACAT CTTGCAGCAGCATGCCAGTCACTACAAGAGCAAGTCTCCCACGATAAGTGATAAAACTTCTCAGGAGAGAGATCGAGGAGGCTGTGGGGT GGTTGGGGGTGGTGGCAGCTGTAGCAGCGTCGGGGGAGCAAGTGGGGGTGAACGGAGTGTTGACCGGCCCCGCACCTCTCCTTCCCAGCG CCTGATGTCCACACACCACCACCACCACCACTTGGGGTACTCATTGCTCCCAGCACAGTACAACTTACCCTATGCAGCAGGGCTTTCTTC |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_COL2A1_ENST00000380518_chr12_48398020_-_ZNF609_ENST00000326648_chr15_64915026_+_8118nt GGGAGAAGACGCAGAGCGCTGCTGGGCTGCCGGGTCTCCCGCTTCCCCCTCCTGCTCCAAGGGCCTCCTGCATGAGGGCGCGGTAGAGAC CCGGACCCGCGCCGTGCTCCTGCCGTTTCGCTGCGCTCCGCCCGGGCCCGGCTCAGCCAGGCCCCGCGGTGAGCCATGATTCGCCTCGGG GCTCCCCAGACGCTGGTGCTGCTGACGCTGCTCGTCGCCGCTGTCCTTCGGTGTCAGGGCCAGGATGTCCATGGAGTCCCCTGTTTCCAC ACCAGCAGTGCTGCCAATACACCTTTTGGTGCCAGTGGTCAACAATGACATCTCATCTCCCTGTGAGCAGATCATGGTTCGTACCCGATC AGTTGGGGTCAACACATGTGATGTGGCTCTGGCCACAGAGCCTGAGTGCTTGGGCCCCTGTGAACCTGGAACTAGCGTCAACCTTGAAGG CATCGTGTGGCAGGAAACAGAAGATGGGATGTTGGTGGTAAATGTAACGTGGAGGAACAAGACATATGTAGGTACACTCCTTGACTGCAC ACGACATGATTGGGCACCCCCAAGGTTCTGTGACTCCCCGACCAGTGACCTGGAAATGCGCAATGGCCGGGGTAGAGGCAAACGCATGCG TCCCAACAGTAATACACCTGTCAATGAGACAGCCACAGCCTCTGACAGCAAAGGGACCAGTAACAGCAGCAAAACCCGGGCAGGAGCCAA TAGCAAAGGCCGTCGGGGCAGCCAGAATTCTTCAGAGCACCGCCCACCTGCCAGCAGCACTTCTGAGGATGTCAAGGCCAGCCCTTCCTC AGCTAATAAGCGGAAAAACAAACCCCTTTCAGACATGGAGCTGAATTCTAGCTCAGAGGACTCCAAAGGGAGCAAGCGTGTCCGTACTAA TTCCATGGGCTCAGCCACTGGCCCCCTTCCTGGGACAAAGGTAGAACCCACTGTTCTGGACAGAAACTGCCCCTCCCCCGTCCTAATTGA CTGTCCCCACCCAAACTGCAACAAGAAGTACAAGCACATCAATGGACTTAAGTACCACCAAGCTCATGCCCATACAGATGATGACAGCAA GCCGGAAGCGGATGGGGACAGTGAGTACGGAGAGGAACCTATTCTCCATGCAGATCTTGGGAGCTGCAACGGTGCATCTGTCTCACAAAA AGGTTCCTTGTCCCCTGCCCGCTCAGCTACCCCCAAAGTTCGACTTGTAGAGCCCCATAGCCCTTCTCCTTCAAGCAAATTCAGCACAAA AGGCCTCTGTAAGAAAAAGTTGAGTGGGGAAGGGGACACAGACCTTGGGGCCTTATCCAATGATGGCTCTGATGATGGACCCTCAGTGAT GGATGAAACAAGCAATGATGCCTTTGATTCTTTAGAAAGGAAGTGTATGGAAAAAGAAAAATGTAAAAAACCCTCTAGTTTAAAACCTGA AAAGATTCCTTCCAAGAGCCTAAAGTCAGCCCGTCCCATTGCCCCTGCCATCCCCCCACAGCAAATCTACACCTTCCAGACAGCCACCTT CACAGCAGCGAGCCCAGGCTCTTCCTCAGGCTTGACCGCCACAGTGGCACAAGCCATGCCCAACAGTCCCCAACTCAAGCCCATTCAGCC CAAGCCCACTGTTATGGGAGAACCTTTCACAGTCAACCCTGCCTTGACTCCAGCCAAGGACAAGAAAAAGAAAGACAAAAAAAAGAAGGA ATCTTCAAAGGAACTTGAAAGTCCTCTGACCCCTGGGAAGGTGTGTCGAGCAGAGGAAGGCAAAAGCCCATTCAGGGAATCTTCAGGAGA TGGGATGAAAATGGAGGGGCTCCTAAATGGCTCATCAGACCCCCACCAAAGCCGACTGGCTAGCATCAAGGCTGAAGCCGACAAGATCTA CAGTTTCACGGACAATGCCCCCAGCCCTTCCATTGGAGGCAGTAGCCGCCTTGAAAACACTACCCCTACTCAGCCCCTGACTCCCTTACA TGTGGTGACCCAGAATGGAGCTGAAGCCAGCTCAGTCAAAACCAACAGCCCTGCATACTCTGACATCTCTGATGCTGGGGAGGATGGGGA GGGCAAGGTAGACAGTGTCAAATCAAAGGACGCCGAACAGTTGGTTAAAGAAGGGGCTAAGAAAACTCTTTTTCCCCCTCAGCCTCAGAG CAAAGACTCACCATATTACCAAGGCTTTGAGAGTTACTATTCTCCAAGTTATGCACAGTCCAGCCCTGGGGCTCTGAACCCCAGCAGCCA GGCAGGAGTGGAGAGCCAGGCCCTGAAGACAAAAAGGGATGAGGAACCTGAGAGCATAGAAGGGAAAGTGAAGAACGATATCTGTGAAGA AAAGAAGCCCGAGCTGAGCAGTTCCAGTCAGCAGCCCTCGGTCATCCAGCAGCGTCCCAATATGTACATGCAGTCCCTGTACTACAACCA GTATGCCTATGTACCCCCCTATGGCTACAGCGACCAGAGTTACCACACCCACCTTCTGAGCACTAACACGGCTTACCGGCAGCAGTACGA AGAACAGCAGAAACGCCAGAGCTTAGAGCAGCAGCAGCGGGGAGTGGACAAGAAGGCAGAGATGGGCCTGAAGGAGCGGGAGGCAGCACT CAAGGAAGAGTGGAAGCAAAAGCCGTCAATTCCACCAACTCTCACCAAGGCCCCCAGCCTGACAGACCTGGTGAAATCAGGACCTGGCAA GGCCAAGGAGCCAGGGGCTGACCCAGCCAAATCAGTCATCATTCCCAAGTTAGATGACTCTTCAAAACTCCCGGGCCAGGCCCCTGAAGG CCTTAAAGTGAAGCTGAGTGATGCCAGCCACCTAAGCAAGGAGGCCTCTGAGGCCAAGACAGGTGCTGAGTGTGGTCGACAGGCAGAGAT GGATCCAATACTCTGGTACCGACAGGAGGCAGAGCCCCGGATGTGGACATATGTTTATCCTGCCAAGTACTCAGACATCAAGTCAGAGGA TGAGCGGTGGAAGGAGGAGCGGGACCGCAAATTGAAGGAGGAAAGGAGTCGGAGTAAGGACTCTGTCCCCAAGGAAGATGGGAAGGAAAG CACAAGTAGTGACTGCAAGCTGCCCACGTCAGAGGAGTCTCGCCTTGGGAGCAAGGAGCCCCGGCCAAGTGTCCATGTGCCTGTGTCCTC CCCACTTACCCAGCACCAGTCCTACATCCCCTACATGCACGGCTATTCCTACAGTCAGTCCTACGACCCCAACCACCCCAGCTACCGGAG CATGCCTGCTGTGATGATGCAGAACTACCCAGGTTCCTACCTGCCTTCCAGCTACTCTTTTTCCCCATATGGCAGCAAGGTCTCAGGTGG TGAAGATGCTGACAAGGCACGAGCCAGCCCCAGTGTGACTTGTAAATCCAGCTCAGAGTCCAAAGCCCTGGACATCTTGCAGCAGCATGC CAGTCACTACAAGAGCAAGTCTCCCACGATAAGTGATAAAACTTCTCAGGAGAGAGATCGAGGAGGCTGTGGGGTGGTTGGGGGTGGTGG CAGCTGTAGCAGCGTCGGGGGAGCAAGTGGGGGTGAACGGAGTGTTGACCGGCCCCGCACCTCTCCTTCCCAGCGCCTGATGTCCACACA CCACCACCACCACCACTTGGGGTACTCATTGCTCCCAGCACAGTACAACTTACCCTATGCAGCAGGGCTTTCTTCTACAGCCATTGTTGC CAGCCAACAAGGCTCAACTCCCTCACTCTACCCACCCCCCAGGAGGTGAGAATGACACCAAGTGCCCGGATAAAGTCAGCTTCACGGGCC CGGACTGGCTTACCCAAGGAGGTGCTGAAGGTGCCGTTTAGACATCAGTTAAATGGTGTTGATCATCCTGTTTGCCGTTTCCACCATGAC TGAAGGCAGACCCTTGGCTATCTCACCTCCACCAGACCTCCGGACTACCTGACCCTACCTCTTCCTCAGGAGCTGGAGAGCTGGTACTTA GCAAAAATATTTATTCTCTCAGCCACAGTTATGACTATTGTGGCCTCTGTGGAGATGAAGGCACGGGAAGCAACCAGGGGAACATGGCCT CAGCCCAGAGAAGCCACTGCTCTGTTCCCCAAGCCCTTGGTCTGCTGCTGGAGCAGTACCAGCCCCCCCGCCCACCAGGGAGGGACCCCC ACCCCCAAGCACTGGGTAAGGTCTGAAGACAGCACAGCAGCCATACCCCTCACCATCATTACCACCATCACCAGATTCTGCATCTCCCTA GTGCTTTGCACCCTGGGAATTGGCAGCATGTGGAGGAACTAGAATCTCAGGAAAGAAATTGGGGGTTGTTTTCTACATAATTGTGAAAAC AAGGTCTTCAAATGTGGAGACTTCTCCCCATTTACATGAGCACATATAAACGCTCACAACCTAGCCTGGAAAGGAAGACCAAGGCATCTG CCCCAACATGGCCTTGAGCTGCCTGTGAGGCAGGGGGCAGGGGTTCCAACACCAGCACAGGGCTCCCCAGGGACACTGGGAGCAAGCTGG TGCTGGAGCATGAATGACGTCTGTGAAGTAGAACCTGCGTCCCCACTAAGTCCTGCTGCTTCTTATTCCCCAACTCCTTGCCCTTTTCCC TTCCCTCCTAACCCCTTGGTGCCTTTCCCAGGGGGATCCCCACACTGGTCTTGCCTCTTCTTTTCCACTGCTTGGCTCTTAAGCCTCAGG CAGATAAACTAGTATTCCCCCCAGCTTGGGGAACCTTGGAGTCTGCCAGGTCACCTTAGGGCAAGGCCCAGAAGGCAGCCCCTGGGAGCA CCCAGCAGTTCTTGGAGATGTCCTGTCATCTAGCCATCTGATATCTTCCTCATTTGAGGCCACAGATATATACAGCCCAATTCCTCTGTC TACAAGTACATGATTTTATATAGCTCAGTCTATAACCTCCATGTGGGCCAATATAAGCTGTGTTTCTTGGTAACACATATTTTGTTTGAG GGGCCACTGGCCATGGGAGGTTATTTGTTCCTTAGACCCTGGAATAACACATCCAAGCCATTACTTATTAGAGTCTCAGAATGTACTCAG TGGAGCTGTGCTTTGAGGCAGCCAACATTTCTCTGCTCTCCTTAGAAATGCAGTCTCCCAATGGAAGCTTTATACTCTTTGTACTGGGAA AGTGAGGATGATTTGGTAGCTTTATTGGGGTCATGTCTTCCCCAAGGTGTGGGGAGCTTAGCTTACTTGGCTTTTGAGGTATCATCCCTC TGTTCTCCCCTCCTATCTTTCCATGACCCTCTGGATTGAGAGAGAGAGATAAAGACTGACAGACACCAGTGTAGGCTGGAAAAGGGAGTG TGTGACCAGAGTGCCAAAAGTGACTAGGAGCAGGAACTTGGCTCCGACTCAGTTTGGAAAATGGGAAATAGGGGACAGTAAGCACAATGC CCAGTAGTAGTTGATTTCCAAGGACCCTGGAACCCTACACTTGAGAGGCTTAGGGTCACCATCTGCTCAAGAGGATCCCCTCTGATCTAC AGGCCTTTTCCCTAGGTTTCTGCCTCCTCGTTTTTGTTCAAGTTGGGTTCTGAGTCCTCCCCAAAAACCATTGTTTTAGACCTCTTGGCA GGGCCCCAAAACAGCCTCCCTCATACCCATCATTCCCTCTGCCTTCTGCTGCCCTCATGGGCAGTGCTCTGAGCAGTGACCTCCCTTTCC TCCGTGGAAGTAGCTAGTGCAGACACCGTCATCCCACCCCACCTGAGTCACCCCAACCAAGAGGGTGACTGAATTTCAGCCTGATTATGC CCTCCTGGGGCTCCTGTGAGGTGGAGCCAAGGTTCCCTCTCTGTTCCTGTTTGTTTTTAAATATTGTTGTGTGTTTTGTATCTGTGGCAC TGGCCTGCAGCATACTCTGTATATATTGTAAAGAAACCGTTAGGAGTAATTTTCTTTTGCATTGGGCAGGCATGGCCCTGCATTCCTGCC CTTTCCACTCATTCTGTAACACAGAGGACGAACTTCTGTATTAGCTGGGCAGCCTTGGGTTCTCCAGAAGAGAACAGGTTTTTCTTTTCC TTTTTAATTTTTCTTCTTAAACATTTGGCTCTTTGATCCTCATATCCAAGTCTCCCCTGAAGAGTAGGAGCTGCTCAGAAGAGCAGGTGA AAGCCACCATGGCAGATCCTGATGCCTGCCGGGCCTAGTCTTCCCTCTGAAATAACATGAAGCAGCAGCTGTGGAGATTCTTGACAAGTG CTGAGTGAAAGATTTGCTGCCCACCTCTACATGGGGAGGAGAAACACAGGTGGGAGCTACCTGTGGCATCCATGACCTAGTCAGAGGGAT GAGATGCTCAGCAGGGGTCCCCATCCTATCCCACCCCACAAACAAAGGCTGGAAAAATTTGCTACCAAGGGCCAAGACCACCAGACCAAG CCTGTTTATGAGCCACCCCTGCCCAGGCCCTCACAGACATTGCTCACGGGGCTTCCCATAGAGGAGAAGCTAAAGAGGGAGGGGGCCTCA TCCCCAGATAGATCAGGCAAGGCTTGGAGAGCTGCTCTTTAGGATCCACATCAACTACTTCCTCATTTTAAGGTATGGCAGTTCCCTTCA TCCCCTTTTCCTGCCTTGTACATGTACATGTATGAAATTTCCTTCTCTTACCGAACTCTCTCCACACATCACAAGGTCAAAGAACCACAC GCTTAGAAGGGTAAGAGGGCACCCTATGAAATGAAATGGTGATTTCTTGAGTCTCTTTTTTCCACGTTTAAGGGGCCATGGCAGGACTTA GAGTTGCGAGTTAAGACTGCAGAGGGCTAGAGAATTATTTCATACAGGCTTTGAGGCCACCCATGTCACTTATCCCGTATACCCTCTCAC CATCCCCTTGTCTACTCTGATGCCCCCAAGATGCAACTGGGCAGCTAGTTGGCCCCATAATTCTGGGCCTTTGTTGTTTGTTTTAATTAC TTGGGCATCCCAGGAAGCTTTCCAGTGATCTCCTACCATGGGCCCCCCTCCTGGGATCAAGCCCCTCCCAGGCCCTGTCCCCAGCCCCTC CTGCCCCAGCCCACCCGCTTGCCTTGGTGCTCAGCCCTCCCATTGGGAGCAGGTTGGGGCGAGCTGGAGGCCCGGGCTGGAGGGGCAGTG TTGCTGTTCATAGATTTTGTTCCATTGGCGTTGCTCTGTTGAATTTAATTTCAGTCTTCCTGATTCTTCCCTTCTGTAAAGTGTACATTA CCAAGTTCCTTGTTTTTTTATATATATATATAAATATATATATATACAAACTGTACTCTTTTTGCCTTTGTACATTCAGGCAAGAAGAGA AAATAAATCTTTTTAAGAGACAATCACAAATCTGTGAGGGCTGCTGGTTATTTCTCCTGGAGTTTGCTGCTGAGCTGCCTCTTCCTTCCT CCCAATTTTCCTGTTCTCCCTCAGCTCTCCTGATCTTCCTGGCCCTGCTCCATATGCATCCTCAGCTTCACTTTCCCTGGCTGATGGCAA GCTGTTGAATCCAGTGTCCAGACTACCTGCCTTGTAACCCTTTTCTGCCCAGCATTGTTTTCTGGCTTGGCCACTGGCTTAGCCCAGGAG CTTTACTCTGTGCCCTGGCCTCCCCTCTCTTCACCTTTAGATTTCCATTCACCGAAGTGGCTTTGGACCCCTGGGTACTCTGGGACCTGT TTCCTGGAGGCCCTGGCTTGGGACACTCACCTGTGAAACTATGCAGCTGGGAGCTCTCTGCCTAAGAGTTTGCACTATTTAAACCTGCCT GGGAGTTAGGACGGATGGTTTTAGGAATGACCGGAAAACTACCCCTAAAACTCCCCCGACATTCCAGCCTCTAGAATGCTCTGATCCAGA GCTCAGTGGATGATTCCCAGCTGGTGGACTCCTGTGGCTACCCCATCAGAACAAGGGCTAAGGGTTTATGGGTCAAGAGTATTTGATCAG AATTTTAAAGGGTGGTATACTCTGAAACACAGCCCAACCAAACCATTGTTTGGCCGCTTTCTCTTTTCCTCTACCTTCCTCATCCCCACT TTTTTCCCTTTCTCTCTACTTCCTCTTCTTAATTGGCTTTGGAATTGAAATATATTTTTAAATTATTTGTTGTATTTATTGAATAAAGTT >In-frame_COL2A1_ENST00000337299_chr12_48398020_-_ZNF609_ENST00000326648_chr15_64915026_+_7953nt ATGATTCGCCTCGGGGCTCCCCAGACGCTGGTGCTGCTGACGCTGCTCGTCGCCGCTGTCCTTCGGTGTCAGGGCCAGGATGTCCATGGA GTCCCCTGTTTCCACACCAGCAGTGCTGCCAATACACCTTTTGGTGCCAGTGGTCAACAATGACATCTCATCTCCCTGTGAGCAGATCAT GGTTCGTACCCGATCAGTTGGGGTCAACACATGTGATGTGGCTCTGGCCACAGAGCCTGAGTGCTTGGGCCCCTGTGAACCTGGAACTAG CGTCAACCTTGAAGGCATCGTGTGGCAGGAAACAGAAGATGGGATGTTGGTGGTAAATGTAACGTGGAGGAACAAGACATATGTAGGTAC ACTCCTTGACTGCACACGACATGATTGGGCACCCCCAAGGTTCTGTGACTCCCCGACCAGTGACCTGGAAATGCGCAATGGCCGGGGTAG AGGCAAACGCATGCGTCCCAACAGTAATACACCTGTCAATGAGACAGCCACAGCCTCTGACAGCAAAGGGACCAGTAACAGCAGCAAAAC CCGGGCAGGAGCCAATAGCAAAGGCCGTCGGGGCAGCCAGAATTCTTCAGAGCACCGCCCACCTGCCAGCAGCACTTCTGAGGATGTCAA GGCCAGCCCTTCCTCAGCTAATAAGCGGAAAAACAAACCCCTTTCAGACATGGAGCTGAATTCTAGCTCAGAGGACTCCAAAGGGAGCAA GCGTGTCCGTACTAATTCCATGGGCTCAGCCACTGGCCCCCTTCCTGGGACAAAGGTAGAACCCACTGTTCTGGACAGAAACTGCCCCTC CCCCGTCCTAATTGACTGTCCCCACCCAAACTGCAACAAGAAGTACAAGCACATCAATGGACTTAAGTACCACCAAGCTCATGCCCATAC AGATGATGACAGCAAGCCGGAAGCGGATGGGGACAGTGAGTACGGAGAGGAACCTATTCTCCATGCAGATCTTGGGAGCTGCAACGGTGC ATCTGTCTCACAAAAAGGTTCCTTGTCCCCTGCCCGCTCAGCTACCCCCAAAGTTCGACTTGTAGAGCCCCATAGCCCTTCTCCTTCAAG CAAATTCAGCACAAAAGGCCTCTGTAAGAAAAAGTTGAGTGGGGAAGGGGACACAGACCTTGGGGCCTTATCCAATGATGGCTCTGATGA TGGACCCTCAGTGATGGATGAAACAAGCAATGATGCCTTTGATTCTTTAGAAAGGAAGTGTATGGAAAAAGAAAAATGTAAAAAACCCTC TAGTTTAAAACCTGAAAAGATTCCTTCCAAGAGCCTAAAGTCAGCCCGTCCCATTGCCCCTGCCATCCCCCCACAGCAAATCTACACCTT CCAGACAGCCACCTTCACAGCAGCGAGCCCAGGCTCTTCCTCAGGCTTGACCGCCACAGTGGCACAAGCCATGCCCAACAGTCCCCAACT CAAGCCCATTCAGCCCAAGCCCACTGTTATGGGAGAACCTTTCACAGTCAACCCTGCCTTGACTCCAGCCAAGGACAAGAAAAAGAAAGA CAAAAAAAAGAAGGAATCTTCAAAGGAACTTGAAAGTCCTCTGACCCCTGGGAAGGTGTGTCGAGCAGAGGAAGGCAAAAGCCCATTCAG GGAATCTTCAGGAGATGGGATGAAAATGGAGGGGCTCCTAAATGGCTCATCAGACCCCCACCAAAGCCGACTGGCTAGCATCAAGGCTGA AGCCGACAAGATCTACAGTTTCACGGACAATGCCCCCAGCCCTTCCATTGGAGGCAGTAGCCGCCTTGAAAACACTACCCCTACTCAGCC CCTGACTCCCTTACATGTGGTGACCCAGAATGGAGCTGAAGCCAGCTCAGTCAAAACCAACAGCCCTGCATACTCTGACATCTCTGATGC TGGGGAGGATGGGGAGGGCAAGGTAGACAGTGTCAAATCAAAGGACGCCGAACAGTTGGTTAAAGAAGGGGCTAAGAAAACTCTTTTTCC CCCTCAGCCTCAGAGCAAAGACTCACCATATTACCAAGGCTTTGAGAGTTACTATTCTCCAAGTTATGCACAGTCCAGCCCTGGGGCTCT GAACCCCAGCAGCCAGGCAGGAGTGGAGAGCCAGGCCCTGAAGACAAAAAGGGATGAGGAACCTGAGAGCATAGAAGGGAAAGTGAAGAA CGATATCTGTGAAGAAAAGAAGCCCGAGCTGAGCAGTTCCAGTCAGCAGCCCTCGGTCATCCAGCAGCGTCCCAATATGTACATGCAGTC CCTGTACTACAACCAGTATGCCTATGTACCCCCCTATGGCTACAGCGACCAGAGTTACCACACCCACCTTCTGAGCACTAACACGGCTTA CCGGCAGCAGTACGAAGAACAGCAGAAACGCCAGAGCTTAGAGCAGCAGCAGCGGGGAGTGGACAAGAAGGCAGAGATGGGCCTGAAGGA GCGGGAGGCAGCACTCAAGGAAGAGTGGAAGCAAAAGCCGTCAATTCCACCAACTCTCACCAAGGCCCCCAGCCTGACAGACCTGGTGAA ATCAGGACCTGGCAAGGCCAAGGAGCCAGGGGCTGACCCAGCCAAATCAGTCATCATTCCCAAGTTAGATGACTCTTCAAAACTCCCGGG CCAGGCCCCTGAAGGCCTTAAAGTGAAGCTGAGTGATGCCAGCCACCTAAGCAAGGAGGCCTCTGAGGCCAAGACAGGTGCTGAGTGTGG TCGACAGGCAGAGATGGATCCAATACTCTGGTACCGACAGGAGGCAGAGCCCCGGATGTGGACATATGTTTATCCTGCCAAGTACTCAGA CATCAAGTCAGAGGATGAGCGGTGGAAGGAGGAGCGGGACCGCAAATTGAAGGAGGAAAGGAGTCGGAGTAAGGACTCTGTCCCCAAGGA AGATGGGAAGGAAAGCACAAGTAGTGACTGCAAGCTGCCCACGTCAGAGGAGTCTCGCCTTGGGAGCAAGGAGCCCCGGCCAAGTGTCCA TGTGCCTGTGTCCTCCCCACTTACCCAGCACCAGTCCTACATCCCCTACATGCACGGCTATTCCTACAGTCAGTCCTACGACCCCAACCA CCCCAGCTACCGGAGCATGCCTGCTGTGATGATGCAGAACTACCCAGGTTCCTACCTGCCTTCCAGCTACTCTTTTTCCCCATATGGCAG CAAGGTCTCAGGTGGTGAAGATGCTGACAAGGCACGAGCCAGCCCCAGTGTGACTTGTAAATCCAGCTCAGAGTCCAAAGCCCTGGACAT CTTGCAGCAGCATGCCAGTCACTACAAGAGCAAGTCTCCCACGATAAGTGATAAAACTTCTCAGGAGAGAGATCGAGGAGGCTGTGGGGT GGTTGGGGGTGGTGGCAGCTGTAGCAGCGTCGGGGGAGCAAGTGGGGGTGAACGGAGTGTTGACCGGCCCCGCACCTCTCCTTCCCAGCG CCTGATGTCCACACACCACCACCACCACCACTTGGGGTACTCATTGCTCCCAGCACAGTACAACTTACCCTATGCAGCAGGGCTTTCTTC TACAGCCATTGTTGCCAGCCAACAAGGCTCAACTCCCTCACTCTACCCACCCCCCAGGAGGTGAGAATGACACCAAGTGCCCGGATAAAG TCAGCTTCACGGGCCCGGACTGGCTTACCCAAGGAGGTGCTGAAGGTGCCGTTTAGACATCAGTTAAATGGTGTTGATCATCCTGTTTGC CGTTTCCACCATGACTGAAGGCAGACCCTTGGCTATCTCACCTCCACCAGACCTCCGGACTACCTGACCCTACCTCTTCCTCAGGAGCTG GAGAGCTGGTACTTAGCAAAAATATTTATTCTCTCAGCCACAGTTATGACTATTGTGGCCTCTGTGGAGATGAAGGCACGGGAAGCAACC AGGGGAACATGGCCTCAGCCCAGAGAAGCCACTGCTCTGTTCCCCAAGCCCTTGGTCTGCTGCTGGAGCAGTACCAGCCCCCCCGCCCAC CAGGGAGGGACCCCCACCCCCAAGCACTGGGTAAGGTCTGAAGACAGCACAGCAGCCATACCCCTCACCATCATTACCACCATCACCAGA TTCTGCATCTCCCTAGTGCTTTGCACCCTGGGAATTGGCAGCATGTGGAGGAACTAGAATCTCAGGAAAGAAATTGGGGGTTGTTTTCTA CATAATTGTGAAAACAAGGTCTTCAAATGTGGAGACTTCTCCCCATTTACATGAGCACATATAAACGCTCACAACCTAGCCTGGAAAGGA AGACCAAGGCATCTGCCCCAACATGGCCTTGAGCTGCCTGTGAGGCAGGGGGCAGGGGTTCCAACACCAGCACAGGGCTCCCCAGGGACA CTGGGAGCAAGCTGGTGCTGGAGCATGAATGACGTCTGTGAAGTAGAACCTGCGTCCCCACTAAGTCCTGCTGCTTCTTATTCCCCAACT CCTTGCCCTTTTCCCTTCCCTCCTAACCCCTTGGTGCCTTTCCCAGGGGGATCCCCACACTGGTCTTGCCTCTTCTTTTCCACTGCTTGG CTCTTAAGCCTCAGGCAGATAAACTAGTATTCCCCCCAGCTTGGGGAACCTTGGAGTCTGCCAGGTCACCTTAGGGCAAGGCCCAGAAGG CAGCCCCTGGGAGCACCCAGCAGTTCTTGGAGATGTCCTGTCATCTAGCCATCTGATATCTTCCTCATTTGAGGCCACAGATATATACAG CCCAATTCCTCTGTCTACAAGTACATGATTTTATATAGCTCAGTCTATAACCTCCATGTGGGCCAATATAAGCTGTGTTTCTTGGTAACA CATATTTTGTTTGAGGGGCCACTGGCCATGGGAGGTTATTTGTTCCTTAGACCCTGGAATAACACATCCAAGCCATTACTTATTAGAGTC TCAGAATGTACTCAGTGGAGCTGTGCTTTGAGGCAGCCAACATTTCTCTGCTCTCCTTAGAAATGCAGTCTCCCAATGGAAGCTTTATAC TCTTTGTACTGGGAAAGTGAGGATGATTTGGTAGCTTTATTGGGGTCATGTCTTCCCCAAGGTGTGGGGAGCTTAGCTTACTTGGCTTTT GAGGTATCATCCCTCTGTTCTCCCCTCCTATCTTTCCATGACCCTCTGGATTGAGAGAGAGAGATAAAGACTGACAGACACCAGTGTAGG CTGGAAAAGGGAGTGTGTGACCAGAGTGCCAAAAGTGACTAGGAGCAGGAACTTGGCTCCGACTCAGTTTGGAAAATGGGAAATAGGGGA CAGTAAGCACAATGCCCAGTAGTAGTTGATTTCCAAGGACCCTGGAACCCTACACTTGAGAGGCTTAGGGTCACCATCTGCTCAAGAGGA TCCCCTCTGATCTACAGGCCTTTTCCCTAGGTTTCTGCCTCCTCGTTTTTGTTCAAGTTGGGTTCTGAGTCCTCCCCAAAAACCATTGTT TTAGACCTCTTGGCAGGGCCCCAAAACAGCCTCCCTCATACCCATCATTCCCTCTGCCTTCTGCTGCCCTCATGGGCAGTGCTCTGAGCA GTGACCTCCCTTTCCTCCGTGGAAGTAGCTAGTGCAGACACCGTCATCCCACCCCACCTGAGTCACCCCAACCAAGAGGGTGACTGAATT TCAGCCTGATTATGCCCTCCTGGGGCTCCTGTGAGGTGGAGCCAAGGTTCCCTCTCTGTTCCTGTTTGTTTTTAAATATTGTTGTGTGTT TTGTATCTGTGGCACTGGCCTGCAGCATACTCTGTATATATTGTAAAGAAACCGTTAGGAGTAATTTTCTTTTGCATTGGGCAGGCATGG CCCTGCATTCCTGCCCTTTCCACTCATTCTGTAACACAGAGGACGAACTTCTGTATTAGCTGGGCAGCCTTGGGTTCTCCAGAAGAGAAC AGGTTTTTCTTTTCCTTTTTAATTTTTCTTCTTAAACATTTGGCTCTTTGATCCTCATATCCAAGTCTCCCCTGAAGAGTAGGAGCTGCT CAGAAGAGCAGGTGAAAGCCACCATGGCAGATCCTGATGCCTGCCGGGCCTAGTCTTCCCTCTGAAATAACATGAAGCAGCAGCTGTGGA GATTCTTGACAAGTGCTGAGTGAAAGATTTGCTGCCCACCTCTACATGGGGAGGAGAAACACAGGTGGGAGCTACCTGTGGCATCCATGA CCTAGTCAGAGGGATGAGATGCTCAGCAGGGGTCCCCATCCTATCCCACCCCACAAACAAAGGCTGGAAAAATTTGCTACCAAGGGCCAA GACCACCAGACCAAGCCTGTTTATGAGCCACCCCTGCCCAGGCCCTCACAGACATTGCTCACGGGGCTTCCCATAGAGGAGAAGCTAAAG AGGGAGGGGGCCTCATCCCCAGATAGATCAGGCAAGGCTTGGAGAGCTGCTCTTTAGGATCCACATCAACTACTTCCTCATTTTAAGGTA TGGCAGTTCCCTTCATCCCCTTTTCCTGCCTTGTACATGTACATGTATGAAATTTCCTTCTCTTACCGAACTCTCTCCACACATCACAAG GTCAAAGAACCACACGCTTAGAAGGGTAAGAGGGCACCCTATGAAATGAAATGGTGATTTCTTGAGTCTCTTTTTTCCACGTTTAAGGGG CCATGGCAGGACTTAGAGTTGCGAGTTAAGACTGCAGAGGGCTAGAGAATTATTTCATACAGGCTTTGAGGCCACCCATGTCACTTATCC CGTATACCCTCTCACCATCCCCTTGTCTACTCTGATGCCCCCAAGATGCAACTGGGCAGCTAGTTGGCCCCATAATTCTGGGCCTTTGTT GTTTGTTTTAATTACTTGGGCATCCCAGGAAGCTTTCCAGTGATCTCCTACCATGGGCCCCCCTCCTGGGATCAAGCCCCTCCCAGGCCC TGTCCCCAGCCCCTCCTGCCCCAGCCCACCCGCTTGCCTTGGTGCTCAGCCCTCCCATTGGGAGCAGGTTGGGGCGAGCTGGAGGCCCGG GCTGGAGGGGCAGTGTTGCTGTTCATAGATTTTGTTCCATTGGCGTTGCTCTGTTGAATTTAATTTCAGTCTTCCTGATTCTTCCCTTCT GTAAAGTGTACATTACCAAGTTCCTTGTTTTTTTATATATATATATAAATATATATATATACAAACTGTACTCTTTTTGCCTTTGTACAT TCAGGCAAGAAGAGAAAATAAATCTTTTTAAGAGACAATCACAAATCTGTGAGGGCTGCTGGTTATTTCTCCTGGAGTTTGCTGCTGAGC TGCCTCTTCCTTCCTCCCAATTTTCCTGTTCTCCCTCAGCTCTCCTGATCTTCCTGGCCCTGCTCCATATGCATCCTCAGCTTCACTTTC CCTGGCTGATGGCAAGCTGTTGAATCCAGTGTCCAGACTACCTGCCTTGTAACCCTTTTCTGCCCAGCATTGTTTTCTGGCTTGGCCACT GGCTTAGCCCAGGAGCTTTACTCTGTGCCCTGGCCTCCCCTCTCTTCACCTTTAGATTTCCATTCACCGAAGTGGCTTTGGACCCCTGGG TACTCTGGGACCTGTTTCCTGGAGGCCCTGGCTTGGGACACTCACCTGTGAAACTATGCAGCTGGGAGCTCTCTGCCTAAGAGTTTGCAC TATTTAAACCTGCCTGGGAGTTAGGACGGATGGTTTTAGGAATGACCGGAAAACTACCCCTAAAACTCCCCCGACATTCCAGCCTCTAGA ATGCTCTGATCCAGAGCTCAGTGGATGATTCCCAGCTGGTGGACTCCTGTGGCTACCCCATCAGAACAAGGGCTAAGGGTTTATGGGTCA AGAGTATTTGATCAGAATTTTAAAGGGTGGTATACTCTGAAACACAGCCCAACCAAACCATTGTTTGGCCGCTTTCTCTTTTCCTCTACC TTCCTCATCCCCACTTTTTTCCCTTTCTCTCTACTTCCTCTTCTTAATTGGCTTTGGAATTGAAATATATTTTTAAATTATTTGTTGTAT |
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FusionGenePPI for COL2A1_ZNF609 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
COL2A1 | BMP2, TGFB1, PRELP, ITGA2B, COL9A1, THBS1, MAG, ANXA5, PKD1, PDIA2, PDGFA, PDGFB, HYAL1, RELA, C1QTNF2, C1QTNF9, COL8A2, PLOD1, MMP9, COLGALT2, MMP2, FKBP9, CNPY2 | ZNF609 | ATXN1, SOX2, HDAC1, AUTS2, NTRK1, PRKCI, USP7, DYNLL1, ATL3, VWA9, NANOG, EYA2, FLCN, SBSPON, THSD4, PIGT, RCCD1, EXOC5, CYLD, TRIM25 |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for COL2A1_ZNF609 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Hgene | COL2A1 | P02458 | DB00048 | Collagenase clostridium histolyticum | Collagen alpha-1(II) chain {ECO:0000305} | biotech | approved|investigational |
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RelatedDiseases for COL2A1_ZNF609 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | COL2A1 | C0220685 | Achondrogenesis type 2 | 9 | CTD_human;ORPHANET;UNIPROT |
Hgene | COL2A1 | C0993582 | Arthritis, Experimental | 7 | CTD_human |
Hgene | COL2A1 | C2745959 | Spondyloepiphyseal dysplasia, congenita | 7 | CTD_human;ORPHANET;UNIPROT |
Hgene | COL2A1 | C1858079 | Osteoarthritis with Mild Chondrodysplasia | 5 | CTD_human;ORPHANET;UNIPROT |
Hgene | COL2A1 | C1836080 | Stickler Syndrome, Type I, Nonsyndromic Ocular | 4 | CTD_human;ORPHANET;UNIPROT |
Hgene | COL2A1 | C1836683 | Czech dysplasia, metatarsal type | 4 | ORPHANET;UNIPROT |
Hgene | COL2A1 | C0410480 | Avascular Necrosis of Femur Head | 3 | ORPHANET;UNIPROT |
Hgene | COL2A1 | C1835437 | Platyspondylic Lethal Skeletal Dysplasia, Torrance Type | 3 | CTD_human;ORPHANET;UNIPROT |
Hgene | COL2A1 | C0003864 | Arthritis | 2 | CTD_human |
Hgene | COL2A1 | C0029408 | Degenerative polyarthritis | 2 | CTD_human;HPO |
Hgene | COL2A1 | C0265279 | Kniest dysplasia | 2 | CTD_human;ORPHANET;UNIPROT |
Hgene | COL2A1 | C0376634 | Craniofacial Abnormalities | 2 | CTD_human |
Hgene | COL2A1 | C0700635 | Strudwick syndrome | 2 | CTD_human;HPO;ORPHANET;UNIPROT |
Hgene | COL2A1 | C1851536 | Epiphyseal Dysplasia, Multiple, with Myopia and Conductive Deafness | 2 | CTD_human;ORPHANET;UNIPROT |
Hgene | COL2A1 | C2020284 | Stickler syndrome, type 1 | 2 | CTD_human;ORPHANET;UNIPROT |
Hgene | COL2A1 | C0008479 | Chondrosarcoma | 1 | CTD_human |
Hgene | COL2A1 | C0008925 | Cleft Palate | 1 | CTD_human;HPO |
Hgene | COL2A1 | C0013604 | Edema | 1 | CTD_human;HPO |
Hgene | COL2A1 | C0018784 | Sensorineural Hearing Loss (disorder) | 1 | CTD_human;HPO |
Hgene | COL2A1 | C0020507 | Hyperplasia | 1 | CTD_human |
Hgene | COL2A1 | C0021368 | Inflammation | 1 | CTD_human |
Hgene | COL2A1 | C0025202 | melanoma | 1 | CTD_human |
Hgene | COL2A1 | C0027092 | Myopia | 1 | CTD_human;HPO |
Hgene | COL2A1 | C0029422 | Osteochondrodysplasias | 1 | CTD_human;HPO |
Hgene | COL2A1 | C0035305 | Retinal Detachment | 1 | CTD_human;HPO |
Hgene | COL2A1 | C0039103 | Synovitis | 1 | CTD_human |
Hgene | COL2A1 | C0041834 | Erythema | 1 | CTD_human |
Hgene | COL2A1 | C0086543 | Cataract | 1 | CTD_human;HPO |
Hgene | COL2A1 | C1262477 | Weight decreased | 1 | CTD_human |
Hgene | COL2A1 | C1840452 | Hyaloideoretinal degeneration of Wagner | 1 | CTD_human |
Hgene | COL2A1 | C1855310 | Megaepiphyseal dwarfism | 1 | CTD_human |
Hgene | COL2A1 | C4225273 | SPONDYLOEPIPHYSEAL DYSPLASIA, STANESCU TYPE | 1 | ORPHANET;UNIPROT |