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Fusion gene ID: 7772 |
FusionGeneSummary for CNTN2_PKP1 |
Fusion gene summary |
Fusion gene information | Fusion gene name: CNTN2_PKP1 | Fusion gene ID: 7772 | Hgene | Tgene | Gene symbol | CNTN2 | PKP1 | Gene ID | 6900 | 5317 |
Gene name | contactin 2 | plakophilin 1 | |
Synonyms | AXT|FAME5|TAG-1|TAX|TAX1 | B6P | |
Cytomap | 1q32.1 | 1q32.1 | |
Type of gene | protein-coding | protein-coding | |
Description | contactin-2axonal glycoprotein TAG-1axonin-1 cell adhesion moleculecontactin 2 (axonal)contactin 2 (transiently expressed)transient axonal glycoprotein 1 | plakophilin-1band 6 protein | |
Modification date | 20180519 | 20180523 | |
UniProtAcc | Q02246 | Q13835 | |
Ensembl transtripts involved in fusion gene | ENST00000331830, | ENST00000263946, ENST00000367324, ENST00000352845, ENST00000475988, | |
Fusion gene scores | * DoF score | 1 X 1 X 1=1 | 4 X 4 X 3=48 |
# samples | 1 | 4 | |
** MAII score | log2(1/1*10)=3.32192809488736 | log2(4/48*10)=-0.263034405833794 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: CNTN2 [Title/Abstract] AND PKP1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | PKP1 | GO:0045110 | intermediate filament bundle assembly | 10852826 |
Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | SARC | TCGA-DX-A3U6-01A | CNTN2 | chr1 | 205022383 | + | PKP1 | chr1 | 201263070 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000331830 | ENST00000263946 | CNTN2 | chr1 | 205022383 | + | PKP1 | chr1 | 201263070 | + |
In-frame | ENST00000331830 | ENST00000367324 | CNTN2 | chr1 | 205022383 | + | PKP1 | chr1 | 201263070 | + |
In-frame | ENST00000331830 | ENST00000352845 | CNTN2 | chr1 | 205022383 | + | PKP1 | chr1 | 201263070 | + |
5CDS-intron | ENST00000331830 | ENST00000475988 | CNTN2 | chr1 | 205022383 | + | PKP1 | chr1 | 201263070 | + |
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FusionProtFeatures for CNTN2_PKP1 |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
CNTN2 | PKP1 |
In conjunction with another transmembrane protein,CNTNAP2, contributes to the organization of axonal domains atnodes of Ranvier by maintaining voltage-gated potassium channelsat the juxtaparanodal region. May be involved in cell adhesion.{ECO:0000269|PubMed:23518707}. | Seems to play a role in junctional plaques. Contributesto epidermal morphogenesis. {ECO:0000269|PubMed:9326952}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | >PKP1 | chr1:205022383 | chr1:201263070 | ENST00000263946 | + | 0 | 15 | 243_274 | 67 | 1570 | Repeat | Note=ARM 1 |
Tgene | >PKP1 | chr1:205022383 | chr1:201263070 | ENST00000263946 | + | 0 | 15 | 275_316 | 67 | 1570 | Repeat | Note=ARM 2 |
Tgene | >PKP1 | chr1:205022383 | chr1:201263070 | ENST00000263946 | + | 0 | 15 | 317_359 | 67 | 1570 | Repeat | Note=ARM 3 |
Tgene | >PKP1 | chr1:205022383 | chr1:201263070 | ENST00000263946 | + | 0 | 15 | 360_415 | 67 | 1570 | Repeat | Note=ARM 4 |
Tgene | >PKP1 | chr1:205022383 | chr1:201263070 | ENST00000263946 | + | 0 | 15 | 416_463 | 67 | 1570 | Repeat | Note=ARM 5 |
Tgene | >PKP1 | chr1:205022383 | chr1:201263070 | ENST00000263946 | + | 0 | 15 | 525_556 | 67 | 1570 | Repeat | Note=ARM 6 |
Tgene | >PKP1 | chr1:205022383 | chr1:201263070 | ENST00000263946 | + | 0 | 15 | 557_603 | 67 | 1570 | Repeat | Note=ARM 7 |
Tgene | >PKP1 | chr1:205022383 | chr1:201263070 | ENST00000263946 | + | 0 | 15 | 604_649 | 67 | 1570 | Repeat | Note=ARM 8 |
Tgene | >PKP1 | chr1:205022383 | chr1:201263070 | ENST00000263946 | + | 0 | 15 | 650_713 | 67 | 1570 | Repeat | Note=ARM 9 |
Tgene | >PKP1 | chr1:205022383 | chr1:201263070 | ENST00000352845 | + | 0 | 14 | 243_274 | 67 | 748 | Repeat | Note=ARM 1 |
Tgene | >PKP1 | chr1:205022383 | chr1:201263070 | ENST00000352845 | + | 0 | 14 | 275_316 | 67 | 748 | Repeat | Note=ARM 2 |
Tgene | >PKP1 | chr1:205022383 | chr1:201263070 | ENST00000352845 | + | 0 | 14 | 317_359 | 67 | 748 | Repeat | Note=ARM 3 |
Tgene | >PKP1 | chr1:205022383 | chr1:201263070 | ENST00000352845 | + | 0 | 14 | 360_415 | 67 | 748 | Repeat | Note=ARM 4 |
Tgene | >PKP1 | chr1:205022383 | chr1:201263070 | ENST00000352845 | + | 0 | 14 | 416_463 | 67 | 748 | Repeat | Note=ARM 5 |
Tgene | >PKP1 | chr1:205022383 | chr1:201263070 | ENST00000352845 | + | 0 | 14 | 525_556 | 67 | 748 | Repeat | Note=ARM 6 |
Tgene | >PKP1 | chr1:205022383 | chr1:201263070 | ENST00000352845 | + | 0 | 14 | 557_603 | 67 | 748 | Repeat | Note=ARM 7 |
Tgene | >PKP1 | chr1:205022383 | chr1:201263070 | ENST00000352845 | + | 0 | 14 | 604_649 | 67 | 748 | Repeat | Note=ARM 8 |
Tgene | >PKP1 | chr1:205022383 | chr1:201263070 | ENST00000352845 | + | 0 | 14 | 650_713 | 67 | 748 | Repeat | Note=ARM 9 |
Tgene | >PKP1 | chr1:205022383 | chr1:201263070 | ENST00000367324 | + | 0 | 14 | 243_274 | 67 | 1549 | Repeat | Note=ARM 1 |
Tgene | >PKP1 | chr1:205022383 | chr1:201263070 | ENST00000367324 | + | 0 | 14 | 275_316 | 67 | 1549 | Repeat | Note=ARM 2 |
Tgene | >PKP1 | chr1:205022383 | chr1:201263070 | ENST00000367324 | + | 0 | 14 | 317_359 | 67 | 1549 | Repeat | Note=ARM 3 |
Tgene | >PKP1 | chr1:205022383 | chr1:201263070 | ENST00000367324 | + | 0 | 14 | 360_415 | 67 | 1549 | Repeat | Note=ARM 4 |
Tgene | >PKP1 | chr1:205022383 | chr1:201263070 | ENST00000367324 | + | 0 | 14 | 416_463 | 67 | 1549 | Repeat | Note=ARM 5 |
Tgene | >PKP1 | chr1:205022383 | chr1:201263070 | ENST00000367324 | + | 0 | 14 | 525_556 | 67 | 1549 | Repeat | Note=ARM 6 |
Tgene | >PKP1 | chr1:205022383 | chr1:201263070 | ENST00000367324 | + | 0 | 14 | 557_603 | 67 | 1549 | Repeat | Note=ARM 7 |
Tgene | >PKP1 | chr1:205022383 | chr1:201263070 | ENST00000367324 | + | 0 | 14 | 604_649 | 67 | 1549 | Repeat | Note=ARM 8 |
Tgene | >PKP1 | chr1:205022383 | chr1:201263070 | ENST00000367324 | + | 0 | 14 | 650_713 | 67 | 1549 | Repeat | Note=ARM 9 |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | >CNTN2 | chr1:205022383 | chr1:201263070 | ENST00000331830 | + | 2 | 23 | 606_612 | 23 | 1041 | Compositional bias | Note=Gly/Pro-rich |
Hgene | >CNTN2 | chr1:205022383 | chr1:201263070 | ENST00000331830 | + | 2 | 23 | 133_222 | 23 | 1041 | Domain | Note=Ig-like C2-type 2 |
Hgene | >CNTN2 | chr1:205022383 | chr1:201263070 | ENST00000331830 | + | 2 | 23 | 239_322 | 23 | 1041 | Domain | Note=Ig-like C2-type 3 |
Hgene | >CNTN2 | chr1:205022383 | chr1:201263070 | ENST00000331830 | + | 2 | 23 | 327_411 | 23 | 1041 | Domain | Note=Ig-like C2-type 4 |
Hgene | >CNTN2 | chr1:205022383 | chr1:201263070 | ENST00000331830 | + | 2 | 23 | 417_504 | 23 | 1041 | Domain | Note=Ig-like C2-type 5 |
Hgene | >CNTN2 | chr1:205022383 | chr1:201263070 | ENST00000331830 | + | 2 | 23 | 43_128 | 23 | 1041 | Domain | Note=Ig-like C2-type 1 |
Hgene | >CNTN2 | chr1:205022383 | chr1:201263070 | ENST00000331830 | + | 2 | 23 | 509_603 | 23 | 1041 | Domain | Note=Ig-like C2-type 6 |
Hgene | >CNTN2 | chr1:205022383 | chr1:201263070 | ENST00000331830 | + | 2 | 23 | 610_708 | 23 | 1041 | Domain | Fibronectin type-III 1 |
Hgene | >CNTN2 | chr1:205022383 | chr1:201263070 | ENST00000331830 | + | 2 | 23 | 713_810 | 23 | 1041 | Domain | Fibronectin type-III 2 |
Hgene | >CNTN2 | chr1:205022383 | chr1:201263070 | ENST00000331830 | + | 2 | 23 | 815_910 | 23 | 1041 | Domain | Fibronectin type-III 3 |
Hgene | >CNTN2 | chr1:205022383 | chr1:201263070 | ENST00000331830 | + | 2 | 23 | 915_1006 | 23 | 1041 | Domain | Fibronectin type-III 4 |
Hgene | >CNTN2 | chr1:205022383 | chr1:201263070 | ENST00000331830 | + | 2 | 23 | 794_796 | 23 | 1041 | Motif | Cell attachment site |
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FusionGeneSequence for CNTN2_PKP1 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_CNTN2_ENST00000331830_chr1_205022383_+_PKP1_ENST00000263946_chr1_201263070_+_704aa MGTATRRKPHLLLVAAVALVSSSGSMYDGLADNYNYGTTSRSSYYSKFQAGNGSWGYPIYNGTLKREPDNRRFSSYSQMENWSRHYPRGS CNTTGAGSDICFMQKIKASRSEPDLYCDPRGTLRKGTLGSKGQKTTQNRYSFYSTCSGQKAIKKCPVRPPSCASKQDPVYIPPISCNKDL SFGHSRASSKICSEDIECSGLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNL VFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF NATGCLRKRLGMRELLALVPQRATSSRVNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRY RQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQ >In-frame_CNTN2_ENST00000331830_chr1_205022383_+_PKP1_ENST00000367324_chr1_201263070_+_683aa MGTATRRKPHLLLVAAVALVSSSGSMYDGLADNYNYGTTSRSSYYSKFQAGNGSWGYPIYNGTLKREPDNRRFSSYSQMENWSRHYPRGS CNTTGAGSDICFMQKIKASRSEPDLYCDPRGTLRKGTLGSKGQKTTQNRYSFYSTCSGQKAIKKCPVRPPSCASKQDPVYIPPISCNKDL SFGHSRASSKICSEDIECSGLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNL VFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFS NKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQ SGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSS >In-frame_CNTN2_ENST00000331830_chr1_205022383_+_PKP1_ENST00000352845_chr1_201263070_+_704aa MGTATRRKPHLLLVAAVALVSSSGSMYDGLADNYNYGTTSRSSYYSKFQAGNGSWGYPIYNGTLKREPDNRRFSSYSQMENWSRHYPRGS CNTTGAGSDICFMQKIKASRSEPDLYCDPRGTLRKGTLGSKGQKTTQNRYSFYSTCSGQKAIKKCPVRPPSCASKQDPVYIPPISCNKDL SFGHSRASSKICSEDIECSGLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNL VFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF NATGCLRKRLGMRELLALVPQRATSSRVNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRY RQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQ |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_CNTN2_ENST00000331830_chr1_205022383_+_PKP1_ENST00000263946_chr1_201263070_+_2112nt ATGGGGACAGCCACCAGGAGGAAGCCACACCTGCTGCTGGTAGCTGCTGTGGCCCTTGTCTCCTCTTCAGGTTCCATGTATGATGGCTTG GCTGACAATTACAACTATGGGACCACCAGCAGGAGCAGCTACTACTCCAAGTTCCAGGCAGGGAATGGCTCATGGGGATATCCGATCTAC AATGGAACCCTCAAGCGGGAGCCTGACAACAGGCGCTTCAGCTCCTACAGCCAGATGGAGAACTGGAGCCGGCACTACCCCCGGGGCAGC TGTAACACCACCGGCGCAGGCAGCGACATCTGCTTCATGCAGAAAATCAAGGCGAGCCGCAGTGAGCCCGACCTCTACTGTGACCCACGG GGCACCCTGCGCAAGGGCACGCTGGGCAGCAAGGGCCAGAAGACCACCCAGAACCGCTACAGCTTTTACAGCACCTGCAGTGGTCAGAAG GCCATAAAGAAGTGCCCTGTGCGCCCGCCCTCTTGTGCCTCCAAGCAGGACCCTGTGTATATCCCGCCCATCTCCTGCAACAAGGACCTG TCCTTTGGCCACTCTAGGGCCAGCTCCAAGATCTGCAGTGAGGACATCGAGTGCAGTGGGCTGACCATCCCCAAGGCTGTGCAGTACCTG AGCTCCCAGGATGAGAAATACCAGGCCATTGGGGCCTATTACATCCAGCATACCTGCTTCCAGGATGAATCTGCCAAGCAACAGGTCTAT CAGCTGGGAGGCATCTGCAAGCTGGTGGACCTCCTCCGCAGCCCCAACCAGAACGTCCAGCAGGCCGCGGCAGGGGCCCTGCGCAACCTG GTGTTCAGGAGCACCACCAACAAGCTGGAGACCCGGAGGCAGAATGGGATCCGCGAGGCAGTCAGCCTCCTGAGGAGAACCGGGAACGCC GAGATCCAGAAGCAGCTGACTGGGCTGCTCTGGAACCTGTCTTCCACTGACGAGCTGAAGGAGGAACTCATTGCCGACGCCCTGCCTGTT CTGGCCGACCGCGTCATCATTCCCTTCTCTGGCTGGTGCGATGGCAATAGCAACATGTCCCGGGAAGTGGTGGACCCTGAGGTCTTCTTC AATGCCACAGGCTGCTTGAGAAAGAGACTGGGCATGCGGGAGCTTCTGGCTCTTGTTCCGCAAAGGGCCACTAGTAGCAGGGTGAACCTG AGCTCGGCCGATGCAGGCCGCCAGACCATGCGTAACTACTCAGGGCTCATTGATTCCCTCATGGCCTATGTCCAGAACTGTGTAGCGGCC AGCCGCTGTGACGACAAGTCTGTGGAAAACTGCATGTGTGTTCTGCACAACCTCTCCTACCGCCTGGACGCCGAGGTGCCCACCCGCTAC CGCCAGCTGGAGTATAACGCCCGCAACGCCTACACCGAGAAGTCCTCCACTGGCTGCTTCAGCAACAAGAGCGACAAGATGATGAACAAC AACTATGACTGCCCCCTGCCTGAGGAAGAGACCAACCCCAAGGGCAGCGGCTGGTTGTACCATTCAGATGCCATCCGCACCTACCTGAAC CTCATGGGCAAGAGCAAGAAAGATGCTACCCTGGAGGCCTGTGCTGGTGCCCTGCAGAACCTGACAGCCAGCAAGGGGCTGATGTCCAGT GGCATGAGCCAGTTGATTGGGCTGAAGGAAAAGGGCCTGCCACAAATTGCCCGCCTCCTGCAATCTGGCAACTCTGATGTGGTGCGGTCC GGAGCCTCCCTCCTGAGCAACATGTCCCGCCACCCTCTGCTGCACAGAGTGATGGGGAACCAGGTGTTCCCGGAGGTGACCAGGCTCCTC ACCAGCCACACTGGCAATACCAGCAACTCCGAAGACATCTTGTCCTCGGCCTGCTACACTGTGAGGAACCTGATGGCCTCGCAGCCACAA CTGGCCAAGCAGTACTTCTCCAGCAGCATGCTCAACAACATCATCAACCTGTGCCGAAGCAGTGCCTCACCCAAGGCCGCAGAAGCTGCC CGGCTTCTCCTGTCTGACATGTGGTCCAGCAAGGAACTGCAGGGTGTCCTCAGACAGCAAGGTTTCGATAGGAACATGCTGGGAACCTTA >In-frame_CNTN2_ENST00000331830_chr1_205022383_+_PKP1_ENST00000367324_chr1_201263070_+_2049nt ATGGGGACAGCCACCAGGAGGAAGCCACACCTGCTGCTGGTAGCTGCTGTGGCCCTTGTCTCCTCTTCAGGTTCCATGTATGATGGCTTG GCTGACAATTACAACTATGGGACCACCAGCAGGAGCAGCTACTACTCCAAGTTCCAGGCAGGGAATGGCTCATGGGGATATCCGATCTAC AATGGAACCCTCAAGCGGGAGCCTGACAACAGGCGCTTCAGCTCCTACAGCCAGATGGAGAACTGGAGCCGGCACTACCCCCGGGGCAGC TGTAACACCACCGGCGCAGGCAGCGACATCTGCTTCATGCAGAAAATCAAGGCGAGCCGCAGTGAGCCCGACCTCTACTGTGACCCACGG GGCACCCTGCGCAAGGGCACGCTGGGCAGCAAGGGCCAGAAGACCACCCAGAACCGCTACAGCTTTTACAGCACCTGCAGTGGTCAGAAG GCCATAAAGAAGTGCCCTGTGCGCCCGCCCTCTTGTGCCTCCAAGCAGGACCCTGTGTATATCCCGCCCATCTCCTGCAACAAGGACCTG TCCTTTGGCCACTCTAGGGCCAGCTCCAAGATCTGCAGTGAGGACATCGAGTGCAGTGGGCTGACCATCCCCAAGGCTGTGCAGTACCTG AGCTCCCAGGATGAGAAATACCAGGCCATTGGGGCCTATTACATCCAGCATACCTGCTTCCAGGATGAATCTGCCAAGCAACAGGTCTAT CAGCTGGGAGGCATCTGCAAGCTGGTGGACCTCCTCCGCAGCCCCAACCAGAACGTCCAGCAGGCCGCGGCAGGGGCCCTGCGCAACCTG GTGTTCAGGAGCACCACCAACAAGCTGGAGACCCGGAGGCAGAATGGGATCCGCGAGGCAGTCAGCCTCCTGAGGAGAACCGGGAACGCC GAGATCCAGAAGCAGCTGACTGGGCTGCTCTGGAACCTGTCTTCCACTGACGAGCTGAAGGAGGAACTCATTGCCGACGCCCTGCCTGTT CTGGCCGACCGCGTCATCATTCCCTTCTCTGGCTGGTGCGATGGCAATAGCAACATGTCCCGGGAAGTGGTGGACCCTGAGGTCTTCTTC AATGCCACAGGCTGCTTGAGGAACCTGAGCTCGGCCGATGCAGGCCGCCAGACCATGCGTAACTACTCAGGGCTCATTGATTCCCTCATG GCCTATGTCCAGAACTGTGTAGCGGCCAGCCGCTGTGACGACAAGTCTGTGGAAAACTGCATGTGTGTTCTGCACAACCTCTCCTACCGC CTGGACGCCGAGGTGCCCACCCGCTACCGCCAGCTGGAGTATAACGCCCGCAACGCCTACACCGAGAAGTCCTCCACTGGCTGCTTCAGC AACAAGAGCGACAAGATGATGAACAACAACTATGACTGCCCCCTGCCTGAGGAAGAGACCAACCCCAAGGGCAGCGGCTGGTTGTACCAT TCAGATGCCATCCGCACCTACCTGAACCTCATGGGCAAGAGCAAGAAAGATGCTACCCTGGAGGCCTGTGCTGGTGCCCTGCAGAACCTG ACAGCCAGCAAGGGGCTGATGTCCAGTGGCATGAGCCAGTTGATTGGGCTGAAGGAAAAGGGCCTGCCACAAATTGCCCGCCTCCTGCAA TCTGGCAACTCTGATGTGGTGCGGTCCGGAGCCTCCCTCCTGAGCAACATGTCCCGCCACCCTCTGCTGCACAGAGTGATGGGGAACCAG GTGTTCCCGGAGGTGACCAGGCTCCTCACCAGCCACACTGGCAATACCAGCAACTCCGAAGACATCTTGTCCTCGGCCTGCTACACTGTG AGGAACCTGATGGCCTCGCAGCCACAACTGGCCAAGCAGTACTTCTCCAGCAGCATGCTCAACAACATCATCAACCTGTGCCGAAGCAGT GCCTCACCCAAGGCCGCAGAAGCTGCCCGGCTTCTCCTGTCTGACATGTGGTCCAGCAAGGAACTGCAGGGTGTCCTCAGACAGCAAGGT >In-frame_CNTN2_ENST00000331830_chr1_205022383_+_PKP1_ENST00000352845_chr1_201263070_+_2112nt ATGGGGACAGCCACCAGGAGGAAGCCACACCTGCTGCTGGTAGCTGCTGTGGCCCTTGTCTCCTCTTCAGGTTCCATGTATGATGGCTTG GCTGACAATTACAACTATGGGACCACCAGCAGGAGCAGCTACTACTCCAAGTTCCAGGCAGGGAATGGCTCATGGGGATATCCGATCTAC AATGGAACCCTCAAGCGGGAGCCTGACAACAGGCGCTTCAGCTCCTACAGCCAGATGGAGAACTGGAGCCGGCACTACCCCCGGGGCAGC TGTAACACCACCGGCGCAGGCAGCGACATCTGCTTCATGCAGAAAATCAAGGCGAGCCGCAGTGAGCCCGACCTCTACTGTGACCCACGG GGCACCCTGCGCAAGGGCACGCTGGGCAGCAAGGGCCAGAAGACCACCCAGAACCGCTACAGCTTTTACAGCACCTGCAGTGGTCAGAAG GCCATAAAGAAGTGCCCTGTGCGCCCGCCCTCTTGTGCCTCCAAGCAGGACCCTGTGTATATCCCGCCCATCTCCTGCAACAAGGACCTG TCCTTTGGCCACTCTAGGGCCAGCTCCAAGATCTGCAGTGAGGACATCGAGTGCAGTGGGCTGACCATCCCCAAGGCTGTGCAGTACCTG AGCTCCCAGGATGAGAAATACCAGGCCATTGGGGCCTATTACATCCAGCATACCTGCTTCCAGGATGAATCTGCCAAGCAACAGGTCTAT CAGCTGGGAGGCATCTGCAAGCTGGTGGACCTCCTCCGCAGCCCCAACCAGAACGTCCAGCAGGCCGCGGCAGGGGCCCTGCGCAACCTG GTGTTCAGGAGCACCACCAACAAGCTGGAGACCCGGAGGCAGAATGGGATCCGCGAGGCAGTCAGCCTCCTGAGGAGAACCGGGAACGCC GAGATCCAGAAGCAGCTGACTGGGCTGCTCTGGAACCTGTCTTCCACTGACGAGCTGAAGGAGGAACTCATTGCCGACGCCCTGCCTGTT CTGGCCGACCGCGTCATCATTCCCTTCTCTGGCTGGTGCGATGGCAATAGCAACATGTCCCGGGAAGTGGTGGACCCTGAGGTCTTCTTC AATGCCACAGGCTGCTTGAGAAAGAGACTGGGCATGCGGGAGCTTCTGGCTCTTGTTCCGCAAAGGGCCACTAGTAGCAGGGTGAACCTG AGCTCGGCCGATGCAGGCCGCCAGACCATGCGTAACTACTCAGGGCTCATTGATTCCCTCATGGCCTATGTCCAGAACTGTGTAGCGGCC AGCCGCTGTGACGACAAGTCTGTGGAAAACTGCATGTGTGTTCTGCACAACCTCTCCTACCGCCTGGACGCCGAGGTGCCCACCCGCTAC CGCCAGCTGGAGTATAACGCCCGCAACGCCTACACCGAGAAGTCCTCCACTGGCTGCTTCAGCAACAAGAGCGACAAGATGATGAACAAC AACTATGACTGCCCCCTGCCTGAGGAAGAGACCAACCCCAAGGGCAGCGGCTGGTTGTACCATTCAGATGCCATCCGCACCTACCTGAAC CTCATGGGCAAGAGCAAGAAAGATGCTACCCTGGAGGCCTGTGCTGGTGCCCTGCAGAACCTGACAGCCAGCAAGGGGCTGATGTCCAGT GGCATGAGCCAGTTGATTGGGCTGAAGGAAAAGGGCCTGCCACAAATTGCCCGCCTCCTGCAATCTGGCAACTCTGATGTGGTGCGGTCC GGAGCCTCCCTCCTGAGCAACATGTCCCGCCACCCTCTGCTGCACAGAGTGATGGGGAACCAGGTGTTCCCGGAGGTGACCAGGCTCCTC ACCAGCCACACTGGCAATACCAGCAACTCCGAAGACATCTTGTCCTCGGCCTGCTACACTGTGAGGAACCTGATGGCCTCGCAGCCACAA CTGGCCAAGCAGTACTTCTCCAGCAGCATGCTCAACAACATCATCAACCTGTGCCGAAGCAGTGCCTCACCCAAGGCCGCAGAAGCTGCC CGGCTTCTCCTGTCTGACATGTGGTCCAGCAAGGAACTGCAGGGTGTCCTCAGACAGCAAGGTTTCGATAGGAACATGCTGGGAACCTTA |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_CNTN2_ENST00000331830_chr1_205022383_+_PKP1_ENST00000263946_chr1_201263070_+_5348nt GCTCCGGGCGCGCTCACACACACGCGCCCTCACCCGCCACCGCCGCCGCGGCCGCCGCCGCACCCGGACAGCGAGCGGCTGAGGCCGCCA GGGCCCAAAGGACAGCGGCCCAGACAGGGGCTGGCGGCCCGGCCGGCCCCGGCTCACCGACTCGGGCAGCATCCACCTGCCCCAGCCAAC ACCCTTCTCTCGCCCCAGGTCCTTTCTCAGCCTCCAGCTGGGCTGTCCCCAAGCTGAGCTGAGGCTCTTCTCCTCCGATCCCCACCTCTG CCCGGACATCCACCATGGGGACAGCCACCAGGAGGAAGCCACACCTGCTGCTGGTAGCTGCTGTGGCCCTTGTCTCCTCTTCAGGTTCCA TGTATGATGGCTTGGCTGACAATTACAACTATGGGACCACCAGCAGGAGCAGCTACTACTCCAAGTTCCAGGCAGGGAATGGCTCATGGG GATATCCGATCTACAATGGAACCCTCAAGCGGGAGCCTGACAACAGGCGCTTCAGCTCCTACAGCCAGATGGAGAACTGGAGCCGGCACT ACCCCCGGGGCAGCTGTAACACCACCGGCGCAGGCAGCGACATCTGCTTCATGCAGAAAATCAAGGCGAGCCGCAGTGAGCCCGACCTCT ACTGTGACCCACGGGGCACCCTGCGCAAGGGCACGCTGGGCAGCAAGGGCCAGAAGACCACCCAGAACCGCTACAGCTTTTACAGCACCT GCAGTGGTCAGAAGGCCATAAAGAAGTGCCCTGTGCGCCCGCCCTCTTGTGCCTCCAAGCAGGACCCTGTGTATATCCCGCCCATCTCCT GCAACAAGGACCTGTCCTTTGGCCACTCTAGGGCCAGCTCCAAGATCTGCAGTGAGGACATCGAGTGCAGTGGGCTGACCATCCCCAAGG CTGTGCAGTACCTGAGCTCCCAGGATGAGAAATACCAGGCCATTGGGGCCTATTACATCCAGCATACCTGCTTCCAGGATGAATCTGCCA AGCAACAGGTCTATCAGCTGGGAGGCATCTGCAAGCTGGTGGACCTCCTCCGCAGCCCCAACCAGAACGTCCAGCAGGCCGCGGCAGGGG CCCTGCGCAACCTGGTGTTCAGGAGCACCACCAACAAGCTGGAGACCCGGAGGCAGAATGGGATCCGCGAGGCAGTCAGCCTCCTGAGGA GAACCGGGAACGCCGAGATCCAGAAGCAGCTGACTGGGCTGCTCTGGAACCTGTCTTCCACTGACGAGCTGAAGGAGGAACTCATTGCCG ACGCCCTGCCTGTTCTGGCCGACCGCGTCATCATTCCCTTCTCTGGCTGGTGCGATGGCAATAGCAACATGTCCCGGGAAGTGGTGGACC CTGAGGTCTTCTTCAATGCCACAGGCTGCTTGAGAAAGAGACTGGGCATGCGGGAGCTTCTGGCTCTTGTTCCGCAAAGGGCCACTAGTA GCAGGGTGAACCTGAGCTCGGCCGATGCAGGCCGCCAGACCATGCGTAACTACTCAGGGCTCATTGATTCCCTCATGGCCTATGTCCAGA ACTGTGTAGCGGCCAGCCGCTGTGACGACAAGTCTGTGGAAAACTGCATGTGTGTTCTGCACAACCTCTCCTACCGCCTGGACGCCGAGG TGCCCACCCGCTACCGCCAGCTGGAGTATAACGCCCGCAACGCCTACACCGAGAAGTCCTCCACTGGCTGCTTCAGCAACAAGAGCGACA AGATGATGAACAACAACTATGACTGCCCCCTGCCTGAGGAAGAGACCAACCCCAAGGGCAGCGGCTGGTTGTACCATTCAGATGCCATCC GCACCTACCTGAACCTCATGGGCAAGAGCAAGAAAGATGCTACCCTGGAGGCCTGTGCTGGTGCCCTGCAGAACCTGACAGCCAGCAAGG GGCTGATGTCCAGTGGCATGAGCCAGTTGATTGGGCTGAAGGAAAAGGGCCTGCCACAAATTGCCCGCCTCCTGCAATCTGGCAACTCTG ATGTGGTGCGGTCCGGAGCCTCCCTCCTGAGCAACATGTCCCGCCACCCTCTGCTGCACAGAGTGATGGGGAACCAGGTGTTCCCGGAGG TGACCAGGCTCCTCACCAGCCACACTGGCAATACCAGCAACTCCGAAGACATCTTGTCCTCGGCCTGCTACACTGTGAGGAACCTGATGG CCTCGCAGCCACAACTGGCCAAGCAGTACTTCTCCAGCAGCATGCTCAACAACATCATCAACCTGTGCCGAAGCAGTGCCTCACCCAAGG CCGCAGAAGCTGCCCGGCTTCTCCTGTCTGACATGTGGTCCAGCAAGGAACTGCAGGGTGTCCTCAGACAGCAAGGTTTCGATAGGAACA TGCTGGGAACCTTAGCTGGGGCCAACAGCCTCAGGAACTTCACCTCCCGATTCTAAGAAGAGACTGTCCAAGCAAGTTAGGCTTGCAGGA AGATATGACCCAGCTGAGAAGCCCTCAGGCCTCGCTGGATGGGGTTTTCTGTCCATCCTATGCAGTATTTGGGAAAGTTCACAAGAAACT GAGAAGAAACCTAAAAACTGTGGATAGTGGAAAGATTTTTAGATTTTTTTTTTCCTTGGGGAAACTGGCAGGCAATGGGGGTTAGGGAGG TTGGGGCGGTGGGGGCTTTCTTGAGTTAAAGGGGCTTATATGTGATGTCAATATTTCTTCCTCTGAGAAATGGTATATATATGTGTATAA TGTAAGTGTGTGCATGCATGTGCGCGTGCATGTGTGTGTGTGTGAGTGTCTTAAAGCATAACCACAAACTGCAAAAAGCTAGGTAAGCTA TTTTGTTGCAGCTCATAAGGTGGTGAAAAGGACTCTCCTGTGTTTCTTACTCATAGGCAAGGACAACATGTGCTTTTTGGTGAGCTGCTC ATAATTCCTGAAATGTGTGGTGCCAGGGCAAGGGGGCCATCACTGCAGTCAGGCCCTCAGAGGAGTCCTGCAGGCTTCCTACCAGTGGTC TCCAGGGGTGCAGGAGTAACTGGGGCTGGGCCAGCCTCCCCACTTACAAGGCTGCTTTCCAGGAAGGGAGGTCTGGTGTATCTCATGGGA GAATCTGGGGTGTCTGTAATGTCACCCCTCCAGCAGCGCCACAAGGACTGAGGTTGGGTAGGTGTGGGGTTCCAGAGGACAGCAGGACAC TCTCGCATACTTTGCCAAATGAGGCCTGCTCAGAGGAGTAGGAGCTGAAAGATGGTGCCTTCCACCCTCTTGGGCTGTGTGCCCATCAGA GCAGGCTCAGCCTGCAAAGGCCCTGCATTCAGAGGTCTTGTAATCTACTTGTTGCAGGAGAAAGAAGGTAAAAAATGATTTTTTTAAGAA AAGCTATTTTATTGCAGCTCTTTCCCAAGAGCTGTTCTGGGAATGGCTGGTCTTCATATTCCCAGTGGAGAGGGGAACAAGTGGGGCTGG GCATATACCTATTCCGGCTTCTAGTGGGATGGAGTTGGGGTATAGAAATTAACCAGGAAGATGTTTCCACCAAGCCTGCTGTGAGTCAAT TGAGGGAGTGTTTGGGGTCCCAGGAGACTTGGACGGGGGGAGTTTGGGTAGACTAGGAAAGGAAAGTGCCATATCAGGGTACCGGTACCG GCAAGCTCACATCTCAGCCAGGGGCCATGCCCCACTTCCCCTGACCCCAGCTGTCTTGTCTCCACTCTGTGAAACCCACAGGGGATGTGA TAAACAGGGCTATTAGGGGTATCAGCCACGTCGAGCCCCCAGACTCTGTGCACTTCAGACCAGCAGCAGCAGGAGGGCTCCCGAGGGCCT TATGAGAAAACCTGTGTGGACATCCCTTGGTGTACACTAAGACAGAGCAGAGCCCAGCGCTCCCAAGCCTTCCTCCTTCCAGCTTCTACC TCCATGCTAGCATTGCTGGTGTTAGAGAGGAATTAACTTCCTGGTCTGTGCCCTTCTCTAGAAGAATATAAGATGCTCCTCCTCCTCACC CCTTCTCAGCCTCCTCCCAAGTCTTCCTCTTCTGCACCACCCCCGAGTCCAAACCCACCTCTTGCCCCAGCATTCAGGCTGGAAAACACT GATGTGGACTCAGTATGATAACTGAGATGGGGGACGCCAGACATGTGAGGACGCTGTCCTCCGAGAGGTGTCCCCGGCTGTTAGCCAGCT GTGCTGTGGTGCTGTGGGTCTGTCATACCCTCCCTTGCTTCTGTTCACACTGGGAGGCCCACTCCTGGCTCACCTCTCCCTCTCAGGGAC CCACGTGGGAGCCTGGATCCCTGGACTGTCCTGGGCATAGGTTTCAGGGGCCTCCTTTGTTGTCATCAGAACCCAGAGGAATTCTTCTCC TAAAAAATACGTATGGCATACCAATCTGTGCGGGGCAGTGTCCTAAGCACTTAGACTACATCAGGGAAGAACACAGACCACATCCCTGTC CTCATGCGGCTTATGTTTTCTGGAGGAAAGTGGAGACACAAGTCCTTGGCTTTAGGGCTCCCCCGGCTGGGGGCTGTGCAGTCCGGTCAG GGCGGGAGGGGAAATGCACCGCTGCATGTGAACCTTACCAGCCCAGGCGGATGCCCCTTCCCCTTAGCACTACCCTGGCCTCCTGCATCC CCTCGCCTCATGTTCCTCCCACCTTCAAAGAATGAAGAGCCCCATGGGCCCAGCCCCTGCCCTGGGAACCAGGCAGCCTTCCAGACCTCA GGGGCTGAGGCAGACTATTAGGGCAGGGCTGACTTTGGTGACACTGCCCATTCCCTCTCAGGCCAGCTCAGGTCACCCGGGCCTCTGACC CAGGCCTGTCACTTTGAGAGGGGCAAAACTGAGAGGGGCTTTTCCTAGAGAAAGAGAACAAGGAGCTTGCCAGGCTTCATGTAGCCGACA CACGTCTCAGGATTTTAAGTCCACATTGGCCTCACACTACCAGGGCCAATGCCCAAAATAAGGAGTTCCAATTTGGGGCCAAATGAGGAA GGACACAGACTCTGCCCTGGGATCTCCTGTGCTAGCGGCCAATGACAAATCCAGTCATTGGCCACCAGCCACCTCTGCAGTGGGGACCAC ACTAGCAGCCCTGACTCCACACTCCTCCTGGGGACCCAAGAGGCAGTGTTGCTGTCTGCATGTCCACCTTGGAATCTGGCTGAACTGGCT GGCAGGACCAAGACTGCGGCTGGGGTGGGCAGGGAAGGGAAGCCGGGGGCTGCTGTGAGGGATCTTGGAGCTTCCCTGTAGCCCACCTTC CCCTTGCTTCATGTTTGTAGAGGAACCTTGTGCCGGCCAGGCCCAGTTTCCTTGTGTGATACACTAATGTATTTGCTTTTTTTGGAAATA >In-frame_CNTN2_ENST00000331830_chr1_205022383_+_PKP1_ENST00000367324_chr1_201263070_+_5285nt GCTCCGGGCGCGCTCACACACACGCGCCCTCACCCGCCACCGCCGCCGCGGCCGCCGCCGCACCCGGACAGCGAGCGGCTGAGGCCGCCA GGGCCCAAAGGACAGCGGCCCAGACAGGGGCTGGCGGCCCGGCCGGCCCCGGCTCACCGACTCGGGCAGCATCCACCTGCCCCAGCCAAC ACCCTTCTCTCGCCCCAGGTCCTTTCTCAGCCTCCAGCTGGGCTGTCCCCAAGCTGAGCTGAGGCTCTTCTCCTCCGATCCCCACCTCTG CCCGGACATCCACCATGGGGACAGCCACCAGGAGGAAGCCACACCTGCTGCTGGTAGCTGCTGTGGCCCTTGTCTCCTCTTCAGGTTCCA TGTATGATGGCTTGGCTGACAATTACAACTATGGGACCACCAGCAGGAGCAGCTACTACTCCAAGTTCCAGGCAGGGAATGGCTCATGGG GATATCCGATCTACAATGGAACCCTCAAGCGGGAGCCTGACAACAGGCGCTTCAGCTCCTACAGCCAGATGGAGAACTGGAGCCGGCACT ACCCCCGGGGCAGCTGTAACACCACCGGCGCAGGCAGCGACATCTGCTTCATGCAGAAAATCAAGGCGAGCCGCAGTGAGCCCGACCTCT ACTGTGACCCACGGGGCACCCTGCGCAAGGGCACGCTGGGCAGCAAGGGCCAGAAGACCACCCAGAACCGCTACAGCTTTTACAGCACCT GCAGTGGTCAGAAGGCCATAAAGAAGTGCCCTGTGCGCCCGCCCTCTTGTGCCTCCAAGCAGGACCCTGTGTATATCCCGCCCATCTCCT GCAACAAGGACCTGTCCTTTGGCCACTCTAGGGCCAGCTCCAAGATCTGCAGTGAGGACATCGAGTGCAGTGGGCTGACCATCCCCAAGG CTGTGCAGTACCTGAGCTCCCAGGATGAGAAATACCAGGCCATTGGGGCCTATTACATCCAGCATACCTGCTTCCAGGATGAATCTGCCA AGCAACAGGTCTATCAGCTGGGAGGCATCTGCAAGCTGGTGGACCTCCTCCGCAGCCCCAACCAGAACGTCCAGCAGGCCGCGGCAGGGG CCCTGCGCAACCTGGTGTTCAGGAGCACCACCAACAAGCTGGAGACCCGGAGGCAGAATGGGATCCGCGAGGCAGTCAGCCTCCTGAGGA GAACCGGGAACGCCGAGATCCAGAAGCAGCTGACTGGGCTGCTCTGGAACCTGTCTTCCACTGACGAGCTGAAGGAGGAACTCATTGCCG ACGCCCTGCCTGTTCTGGCCGACCGCGTCATCATTCCCTTCTCTGGCTGGTGCGATGGCAATAGCAACATGTCCCGGGAAGTGGTGGACC CTGAGGTCTTCTTCAATGCCACAGGCTGCTTGAGGAACCTGAGCTCGGCCGATGCAGGCCGCCAGACCATGCGTAACTACTCAGGGCTCA TTGATTCCCTCATGGCCTATGTCCAGAACTGTGTAGCGGCCAGCCGCTGTGACGACAAGTCTGTGGAAAACTGCATGTGTGTTCTGCACA ACCTCTCCTACCGCCTGGACGCCGAGGTGCCCACCCGCTACCGCCAGCTGGAGTATAACGCCCGCAACGCCTACACCGAGAAGTCCTCCA CTGGCTGCTTCAGCAACAAGAGCGACAAGATGATGAACAACAACTATGACTGCCCCCTGCCTGAGGAAGAGACCAACCCCAAGGGCAGCG GCTGGTTGTACCATTCAGATGCCATCCGCACCTACCTGAACCTCATGGGCAAGAGCAAGAAAGATGCTACCCTGGAGGCCTGTGCTGGTG CCCTGCAGAACCTGACAGCCAGCAAGGGGCTGATGTCCAGTGGCATGAGCCAGTTGATTGGGCTGAAGGAAAAGGGCCTGCCACAAATTG CCCGCCTCCTGCAATCTGGCAACTCTGATGTGGTGCGGTCCGGAGCCTCCCTCCTGAGCAACATGTCCCGCCACCCTCTGCTGCACAGAG TGATGGGGAACCAGGTGTTCCCGGAGGTGACCAGGCTCCTCACCAGCCACACTGGCAATACCAGCAACTCCGAAGACATCTTGTCCTCGG CCTGCTACACTGTGAGGAACCTGATGGCCTCGCAGCCACAACTGGCCAAGCAGTACTTCTCCAGCAGCATGCTCAACAACATCATCAACC TGTGCCGAAGCAGTGCCTCACCCAAGGCCGCAGAAGCTGCCCGGCTTCTCCTGTCTGACATGTGGTCCAGCAAGGAACTGCAGGGTGTCC TCAGACAGCAAGGTTTCGATAGGAACATGCTGGGAACCTTAGCTGGGGCCAACAGCCTCAGGAACTTCACCTCCCGATTCTAAGAAGAGA CTGTCCAAGCAAGTTAGGCTTGCAGGAAGATATGACCCAGCTGAGAAGCCCTCAGGCCTCGCTGGATGGGGTTTTCTGTCCATCCTATGC AGTATTTGGGAAAGTTCACAAGAAACTGAGAAGAAACCTAAAAACTGTGGATAGTGGAAAGATTTTTAGATTTTTTTTTTCCTTGGGGAA ACTGGCAGGCAATGGGGGTTAGGGAGGTTGGGGCGGTGGGGGCTTTCTTGAGTTAAAGGGGCTTATATGTGATGTCAATATTTCTTCCTC TGAGAAATGGTATATATATGTGTATAATGTAAGTGTGTGCATGCATGTGCGCGTGCATGTGTGTGTGTGTGAGTGTCTTAAAGCATAACC ACAAACTGCAAAAAGCTAGGTAAGCTATTTTGTTGCAGCTCATAAGGTGGTGAAAAGGACTCTCCTGTGTTTCTTACTCATAGGCAAGGA CAACATGTGCTTTTTGGTGAGCTGCTCATAATTCCTGAAATGTGTGGTGCCAGGGCAAGGGGGCCATCACTGCAGTCAGGCCCTCAGAGG AGTCCTGCAGGCTTCCTACCAGTGGTCTCCAGGGGTGCAGGAGTAACTGGGGCTGGGCCAGCCTCCCCACTTACAAGGCTGCTTTCCAGG AAGGGAGGTCTGGTGTATCTCATGGGAGAATCTGGGGTGTCTGTAATGTCACCCCTCCAGCAGCGCCACAAGGACTGAGGTTGGGTAGGT GTGGGGTTCCAGAGGACAGCAGGACACTCTCGCATACTTTGCCAAATGAGGCCTGCTCAGAGGAGTAGGAGCTGAAAGATGGTGCCTTCC ACCCTCTTGGGCTGTGTGCCCATCAGAGCAGGCTCAGCCTGCAAAGGCCCTGCATTCAGAGGTCTTGTAATCTACTTGTTGCAGGAGAAA GAAGGTAAAAAATGATTTTTTTAAGAAAAGCTATTTTATTGCAGCTCTTTCCCAAGAGCTGTTCTGGGAATGGCTGGTCTTCATATTCCC AGTGGAGAGGGGAACAAGTGGGGCTGGGCATATACCTATTCCGGCTTCTAGTGGGATGGAGTTGGGGTATAGAAATTAACCAGGAAGATG TTTCCACCAAGCCTGCTGTGAGTCAATTGAGGGAGTGTTTGGGGTCCCAGGAGACTTGGACGGGGGGAGTTTGGGTAGACTAGGAAAGGA AAGTGCCATATCAGGGTACCGGTACCGGCAAGCTCACATCTCAGCCAGGGGCCATGCCCCACTTCCCCTGACCCCAGCTGTCTTGTCTCC ACTCTGTGAAACCCACAGGGGATGTGATAAACAGGGCTATTAGGGGTATCAGCCACGTCGAGCCCCCAGACTCTGTGCACTTCAGACCAG CAGCAGCAGGAGGGCTCCCGAGGGCCTTATGAGAAAACCTGTGTGGACATCCCTTGGTGTACACTAAGACAGAGCAGAGCCCAGCGCTCC CAAGCCTTCCTCCTTCCAGCTTCTACCTCCATGCTAGCATTGCTGGTGTTAGAGAGGAATTAACTTCCTGGTCTGTGCCCTTCTCTAGAA GAATATAAGATGCTCCTCCTCCTCACCCCTTCTCAGCCTCCTCCCAAGTCTTCCTCTTCTGCACCACCCCCGAGTCCAAACCCACCTCTT GCCCCAGCATTCAGGCTGGAAAACACTGATGTGGACTCAGTATGATAACTGAGATGGGGGACGCCAGACATGTGAGGACGCTGTCCTCCG AGAGGTGTCCCCGGCTGTTAGCCAGCTGTGCTGTGGTGCTGTGGGTCTGTCATACCCTCCCTTGCTTCTGTTCACACTGGGAGGCCCACT CCTGGCTCACCTCTCCCTCTCAGGGACCCACGTGGGAGCCTGGATCCCTGGACTGTCCTGGGCATAGGTTTCAGGGGCCTCCTTTGTTGT CATCAGAACCCAGAGGAATTCTTCTCCTAAAAAATACGTATGGCATACCAATCTGTGCGGGGCAGTGTCCTAAGCACTTAGACTACATCA GGGAAGAACACAGACCACATCCCTGTCCTCATGCGGCTTATGTTTTCTGGAGGAAAGTGGAGACACAAGTCCTTGGCTTTAGGGCTCCCC CGGCTGGGGGCTGTGCAGTCCGGTCAGGGCGGGAGGGGAAATGCACCGCTGCATGTGAACCTTACCAGCCCAGGCGGATGCCCCTTCCCC TTAGCACTACCCTGGCCTCCTGCATCCCCTCGCCTCATGTTCCTCCCACCTTCAAAGAATGAAGAGCCCCATGGGCCCAGCCCCTGCCCT GGGAACCAGGCAGCCTTCCAGACCTCAGGGGCTGAGGCAGACTATTAGGGCAGGGCTGACTTTGGTGACACTGCCCATTCCCTCTCAGGC CAGCTCAGGTCACCCGGGCCTCTGACCCAGGCCTGTCACTTTGAGAGGGGCAAAACTGAGAGGGGCTTTTCCTAGAGAAAGAGAACAAGG AGCTTGCCAGGCTTCATGTAGCCGACACACGTCTCAGGATTTTAAGTCCACATTGGCCTCACACTACCAGGGCCAATGCCCAAAATAAGG AGTTCCAATTTGGGGCCAAATGAGGAAGGACACAGACTCTGCCCTGGGATCTCCTGTGCTAGCGGCCAATGACAAATCCAGTCATTGGCC ACCAGCCACCTCTGCAGTGGGGACCACACTAGCAGCCCTGACTCCACACTCCTCCTGGGGACCCAAGAGGCAGTGTTGCTGTCTGCATGT CCACCTTGGAATCTGGCTGAACTGGCTGGCAGGACCAAGACTGCGGCTGGGGTGGGCAGGGAAGGGAAGCCGGGGGCTGCTGTGAGGGAT CTTGGAGCTTCCCTGTAGCCCACCTTCCCCTTGCTTCATGTTTGTAGAGGAACCTTGTGCCGGCCAGGCCCAGTTTCCTTGTGTGATACA >In-frame_CNTN2_ENST00000331830_chr1_205022383_+_PKP1_ENST00000352845_chr1_201263070_+_2396nt GCTCCGGGCGCGCTCACACACACGCGCCCTCACCCGCCACCGCCGCCGCGGCCGCCGCCGCACCCGGACAGCGAGCGGCTGAGGCCGCCA GGGCCCAAAGGACAGCGGCCCAGACAGGGGCTGGCGGCCCGGCCGGCCCCGGCTCACCGACTCGGGCAGCATCCACCTGCCCCAGCCAAC ACCCTTCTCTCGCCCCAGGTCCTTTCTCAGCCTCCAGCTGGGCTGTCCCCAAGCTGAGCTGAGGCTCTTCTCCTCCGATCCCCACCTCTG CCCGGACATCCACCATGGGGACAGCCACCAGGAGGAAGCCACACCTGCTGCTGGTAGCTGCTGTGGCCCTTGTCTCCTCTTCAGGTTCCA TGTATGATGGCTTGGCTGACAATTACAACTATGGGACCACCAGCAGGAGCAGCTACTACTCCAAGTTCCAGGCAGGGAATGGCTCATGGG GATATCCGATCTACAATGGAACCCTCAAGCGGGAGCCTGACAACAGGCGCTTCAGCTCCTACAGCCAGATGGAGAACTGGAGCCGGCACT ACCCCCGGGGCAGCTGTAACACCACCGGCGCAGGCAGCGACATCTGCTTCATGCAGAAAATCAAGGCGAGCCGCAGTGAGCCCGACCTCT ACTGTGACCCACGGGGCACCCTGCGCAAGGGCACGCTGGGCAGCAAGGGCCAGAAGACCACCCAGAACCGCTACAGCTTTTACAGCACCT GCAGTGGTCAGAAGGCCATAAAGAAGTGCCCTGTGCGCCCGCCCTCTTGTGCCTCCAAGCAGGACCCTGTGTATATCCCGCCCATCTCCT GCAACAAGGACCTGTCCTTTGGCCACTCTAGGGCCAGCTCCAAGATCTGCAGTGAGGACATCGAGTGCAGTGGGCTGACCATCCCCAAGG CTGTGCAGTACCTGAGCTCCCAGGATGAGAAATACCAGGCCATTGGGGCCTATTACATCCAGCATACCTGCTTCCAGGATGAATCTGCCA AGCAACAGGTCTATCAGCTGGGAGGCATCTGCAAGCTGGTGGACCTCCTCCGCAGCCCCAACCAGAACGTCCAGCAGGCCGCGGCAGGGG CCCTGCGCAACCTGGTGTTCAGGAGCACCACCAACAAGCTGGAGACCCGGAGGCAGAATGGGATCCGCGAGGCAGTCAGCCTCCTGAGGA GAACCGGGAACGCCGAGATCCAGAAGCAGCTGACTGGGCTGCTCTGGAACCTGTCTTCCACTGACGAGCTGAAGGAGGAACTCATTGCCG ACGCCCTGCCTGTTCTGGCCGACCGCGTCATCATTCCCTTCTCTGGCTGGTGCGATGGCAATAGCAACATGTCCCGGGAAGTGGTGGACC CTGAGGTCTTCTTCAATGCCACAGGCTGCTTGAGAAAGAGACTGGGCATGCGGGAGCTTCTGGCTCTTGTTCCGCAAAGGGCCACTAGTA GCAGGGTGAACCTGAGCTCGGCCGATGCAGGCCGCCAGACCATGCGTAACTACTCAGGGCTCATTGATTCCCTCATGGCCTATGTCCAGA ACTGTGTAGCGGCCAGCCGCTGTGACGACAAGTCTGTGGAAAACTGCATGTGTGTTCTGCACAACCTCTCCTACCGCCTGGACGCCGAGG TGCCCACCCGCTACCGCCAGCTGGAGTATAACGCCCGCAACGCCTACACCGAGAAGTCCTCCACTGGCTGCTTCAGCAACAAGAGCGACA AGATGATGAACAACAACTATGACTGCCCCCTGCCTGAGGAAGAGACCAACCCCAAGGGCAGCGGCTGGTTGTACCATTCAGATGCCATCC GCACCTACCTGAACCTCATGGGCAAGAGCAAGAAAGATGCTACCCTGGAGGCCTGTGCTGGTGCCCTGCAGAACCTGACAGCCAGCAAGG GGCTGATGTCCAGTGGCATGAGCCAGTTGATTGGGCTGAAGGAAAAGGGCCTGCCACAAATTGCCCGCCTCCTGCAATCTGGCAACTCTG ATGTGGTGCGGTCCGGAGCCTCCCTCCTGAGCAACATGTCCCGCCACCCTCTGCTGCACAGAGTGATGGGGAACCAGGTGTTCCCGGAGG TGACCAGGCTCCTCACCAGCCACACTGGCAATACCAGCAACTCCGAAGACATCTTGTCCTCGGCCTGCTACACTGTGAGGAACCTGATGG CCTCGCAGCCACAACTGGCCAAGCAGTACTTCTCCAGCAGCATGCTCAACAACATCATCAACCTGTGCCGAAGCAGTGCCTCACCCAAGG CCGCAGAAGCTGCCCGGCTTCTCCTGTCTGACATGTGGTCCAGCAAGGAACTGCAGGGTGTCCTCAGACAGCAAGGTTTCGATAGGAACA |
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FusionGenePPI for CNTN2_PKP1 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
CNTN2 | CNTNAP2, NRCAM, L1CAM, CNTN1, NCAN, EGFR, IKBKG | PKP1 | DSG1, VIM, KRT14, KRT8, DSP, USP1, GOSR1, WIPI1, DSC1, UCHL5, TARDBP, TUBG1, TENC1, CCDC8, SUZ12, BMI1, COASY, CIDEA, RSG1, CA8, CCDC51, TFG, SGOL2, RBM24, HNRNPA1, MYC, FOXI2, MCM2, CCDC82, FBXL4, FCF1, KIF3A, CYLD, GTF2IRD1 |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for CNTN2_PKP1 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for CNTN2_PKP1 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | PKP1 | C2239176 | Liver carcinoma | 1 | CTD_human |