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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 7772

FusionGeneSummary for CNTN2_PKP1

check button Fusion gene summary
Fusion gene informationFusion gene name: CNTN2_PKP1
Fusion gene ID: 7772
HgeneTgene
Gene symbol

CNTN2

PKP1

Gene ID

6900

5317

Gene namecontactin 2plakophilin 1
SynonymsAXT|FAME5|TAG-1|TAX|TAX1B6P
Cytomap

1q32.1

1q32.1

Type of geneprotein-codingprotein-coding
Descriptioncontactin-2axonal glycoprotein TAG-1axonin-1 cell adhesion moleculecontactin 2 (axonal)contactin 2 (transiently expressed)transient axonal glycoprotein 1plakophilin-1band 6 protein
Modification date2018051920180523
UniProtAcc

Q02246

Q13835

Ensembl transtripts involved in fusion geneENST00000331830, ENST00000263946, 
ENST00000367324, ENST00000352845, 
ENST00000475988, 
Fusion gene scores* DoF score1 X 1 X 1=14 X 4 X 3=48
# samples 14
** MAII scorelog2(1/1*10)=3.32192809488736log2(4/48*10)=-0.263034405833794
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: CNTN2 [Title/Abstract] AND PKP1 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
TgenePKP1

GO:0045110

intermediate filament bundle assembly

10852826


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGARVSARCTCGA-DX-A3U6-01ACNTN2chr1

205022383

+PKP1chr1

201263070

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
In-frameENST00000331830ENST00000263946CNTN2chr1

205022383

+PKP1chr1

201263070

+
In-frameENST00000331830ENST00000367324CNTN2chr1

205022383

+PKP1chr1

201263070

+
In-frameENST00000331830ENST00000352845CNTN2chr1

205022383

+PKP1chr1

201263070

+
5CDS-intronENST00000331830ENST00000475988CNTN2chr1

205022383

+PKP1chr1

201263070

+

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FusionProtFeatures for CNTN2_PKP1


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
CNTN2

Q02246

PKP1

Q13835

In conjunction with another transmembrane protein,CNTNAP2, contributes to the organization of axonal domains atnodes of Ranvier by maintaining voltage-gated potassium channelsat the juxtaparanodal region. May be involved in cell adhesion.{ECO:0000269|PubMed:23518707}. Seems to play a role in junctional plaques. Contributesto epidermal morphogenesis. {ECO:0000269|PubMed:9326952}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
>>>>>>>>>>>>>>>>>>>>>>>>>>>
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
TgenePKP1chr1:205022383chr1:201263070ENST00000263946+015243_274671570RepeatNote=ARM 1
TgenePKP1chr1:205022383chr1:201263070ENST00000263946+015275_316671570RepeatNote=ARM 2
TgenePKP1chr1:205022383chr1:201263070ENST00000263946+015317_359671570RepeatNote=ARM 3
TgenePKP1chr1:205022383chr1:201263070ENST00000263946+015360_415671570RepeatNote=ARM 4
TgenePKP1chr1:205022383chr1:201263070ENST00000263946+015416_463671570RepeatNote=ARM 5
TgenePKP1chr1:205022383chr1:201263070ENST00000263946+015525_556671570RepeatNote=ARM 6
TgenePKP1chr1:205022383chr1:201263070ENST00000263946+015557_603671570RepeatNote=ARM 7
TgenePKP1chr1:205022383chr1:201263070ENST00000263946+015604_649671570RepeatNote=ARM 8
TgenePKP1chr1:205022383chr1:201263070ENST00000263946+015650_713671570RepeatNote=ARM 9
TgenePKP1chr1:205022383chr1:201263070ENST00000352845+014243_27467748RepeatNote=ARM 1
TgenePKP1chr1:205022383chr1:201263070ENST00000352845+014275_31667748RepeatNote=ARM 2
TgenePKP1chr1:205022383chr1:201263070ENST00000352845+014317_35967748RepeatNote=ARM 3
TgenePKP1chr1:205022383chr1:201263070ENST00000352845+014360_41567748RepeatNote=ARM 4
TgenePKP1chr1:205022383chr1:201263070ENST00000352845+014416_46367748RepeatNote=ARM 5
TgenePKP1chr1:205022383chr1:201263070ENST00000352845+014525_55667748RepeatNote=ARM 6
TgenePKP1chr1:205022383chr1:201263070ENST00000352845+014557_60367748RepeatNote=ARM 7
TgenePKP1chr1:205022383chr1:201263070ENST00000352845+014604_64967748RepeatNote=ARM 8
TgenePKP1chr1:205022383chr1:201263070ENST00000352845+014650_71367748RepeatNote=ARM 9
TgenePKP1chr1:205022383chr1:201263070ENST00000367324+014243_274671549RepeatNote=ARM 1
TgenePKP1chr1:205022383chr1:201263070ENST00000367324+014275_316671549RepeatNote=ARM 2
TgenePKP1chr1:205022383chr1:201263070ENST00000367324+014317_359671549RepeatNote=ARM 3
TgenePKP1chr1:205022383chr1:201263070ENST00000367324+014360_415671549RepeatNote=ARM 4
TgenePKP1chr1:205022383chr1:201263070ENST00000367324+014416_463671549RepeatNote=ARM 5
TgenePKP1chr1:205022383chr1:201263070ENST00000367324+014525_556671549RepeatNote=ARM 6
TgenePKP1chr1:205022383chr1:201263070ENST00000367324+014557_603671549RepeatNote=ARM 7
TgenePKP1chr1:205022383chr1:201263070ENST00000367324+014604_649671549RepeatNote=ARM 8
TgenePKP1chr1:205022383chr1:201263070ENST00000367324+014650_713671549RepeatNote=ARM 9

- In-frame and not-retained protein feature among the 13 regional features.
>>>>>>>>>>>>
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneCNTN2chr1:205022383chr1:201263070ENST00000331830+223606_612231041Compositional biasNote=Gly/Pro-rich
HgeneCNTN2chr1:205022383chr1:201263070ENST00000331830+223133_222231041DomainNote=Ig-like C2-type 2
HgeneCNTN2chr1:205022383chr1:201263070ENST00000331830+223239_322231041DomainNote=Ig-like C2-type 3
HgeneCNTN2chr1:205022383chr1:201263070ENST00000331830+223327_411231041DomainNote=Ig-like C2-type 4
HgeneCNTN2chr1:205022383chr1:201263070ENST00000331830+223417_504231041DomainNote=Ig-like C2-type 5
HgeneCNTN2chr1:205022383chr1:201263070ENST00000331830+22343_128231041DomainNote=Ig-like C2-type 1
HgeneCNTN2chr1:205022383chr1:201263070ENST00000331830+223509_603231041DomainNote=Ig-like C2-type 6
HgeneCNTN2chr1:205022383chr1:201263070ENST00000331830+223610_708231041DomainFibronectin type-III 1
HgeneCNTN2chr1:205022383chr1:201263070ENST00000331830+223713_810231041DomainFibronectin type-III 2
HgeneCNTN2chr1:205022383chr1:201263070ENST00000331830+223815_910231041DomainFibronectin type-III 3
HgeneCNTN2chr1:205022383chr1:201263070ENST00000331830+223915_1006231041DomainFibronectin type-III 4
HgeneCNTN2chr1:205022383chr1:201263070ENST00000331830+223794_796231041MotifCell attachment site


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FusionGeneSequence for CNTN2_PKP1


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.
>In-frame_CNTN2_ENST00000331830_chr1_205022383_+_PKP1_ENST00000263946_chr1_201263070_+_704aa
MGTATRRKPHLLLVAAVALVSSSGSMYDGLADNYNYGTTSRSSYYSKFQAGNGSWGYPIYNGTLKREPDNRRFSSYSQMENWSRHYPRGS
CNTTGAGSDICFMQKIKASRSEPDLYCDPRGTLRKGTLGSKGQKTTQNRYSFYSTCSGQKAIKKCPVRPPSCASKQDPVYIPPISCNKDL
SFGHSRASSKICSEDIECSGLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNL
VFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF
NATGCLRKRLGMRELLALVPQRATSSRVNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRY
RQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS
GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQ

>In-frame_CNTN2_ENST00000331830_chr1_205022383_+_PKP1_ENST00000367324_chr1_201263070_+_683aa
MGTATRRKPHLLLVAAVALVSSSGSMYDGLADNYNYGTTSRSSYYSKFQAGNGSWGYPIYNGTLKREPDNRRFSSYSQMENWSRHYPRGS
CNTTGAGSDICFMQKIKASRSEPDLYCDPRGTLRKGTLGSKGQKTTQNRYSFYSTCSGQKAIKKCPVRPPSCASKQDPVYIPPISCNKDL
SFGHSRASSKICSEDIECSGLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNL
VFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF
NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFS
NKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQ
SGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSS

>In-frame_CNTN2_ENST00000331830_chr1_205022383_+_PKP1_ENST00000352845_chr1_201263070_+_704aa
MGTATRRKPHLLLVAAVALVSSSGSMYDGLADNYNYGTTSRSSYYSKFQAGNGSWGYPIYNGTLKREPDNRRFSSYSQMENWSRHYPRGS
CNTTGAGSDICFMQKIKASRSEPDLYCDPRGTLRKGTLGSKGQKTTQNRYSFYSTCSGQKAIKKCPVRPPSCASKQDPVYIPPISCNKDL
SFGHSRASSKICSEDIECSGLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNL
VFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF
NATGCLRKRLGMRELLALVPQRATSSRVNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRY
RQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS
GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQ


* Fusion transcript sequences (only coding sequence (CDS) region).
>In-frame_CNTN2_ENST00000331830_chr1_205022383_+_PKP1_ENST00000263946_chr1_201263070_+_2112nt
ATGGGGACAGCCACCAGGAGGAAGCCACACCTGCTGCTGGTAGCTGCTGTGGCCCTTGTCTCCTCTTCAGGTTCCATGTATGATGGCTTG
GCTGACAATTACAACTATGGGACCACCAGCAGGAGCAGCTACTACTCCAAGTTCCAGGCAGGGAATGGCTCATGGGGATATCCGATCTAC
AATGGAACCCTCAAGCGGGAGCCTGACAACAGGCGCTTCAGCTCCTACAGCCAGATGGAGAACTGGAGCCGGCACTACCCCCGGGGCAGC
TGTAACACCACCGGCGCAGGCAGCGACATCTGCTTCATGCAGAAAATCAAGGCGAGCCGCAGTGAGCCCGACCTCTACTGTGACCCACGG
GGCACCCTGCGCAAGGGCACGCTGGGCAGCAAGGGCCAGAAGACCACCCAGAACCGCTACAGCTTTTACAGCACCTGCAGTGGTCAGAAG
GCCATAAAGAAGTGCCCTGTGCGCCCGCCCTCTTGTGCCTCCAAGCAGGACCCTGTGTATATCCCGCCCATCTCCTGCAACAAGGACCTG
TCCTTTGGCCACTCTAGGGCCAGCTCCAAGATCTGCAGTGAGGACATCGAGTGCAGTGGGCTGACCATCCCCAAGGCTGTGCAGTACCTG
AGCTCCCAGGATGAGAAATACCAGGCCATTGGGGCCTATTACATCCAGCATACCTGCTTCCAGGATGAATCTGCCAAGCAACAGGTCTAT
CAGCTGGGAGGCATCTGCAAGCTGGTGGACCTCCTCCGCAGCCCCAACCAGAACGTCCAGCAGGCCGCGGCAGGGGCCCTGCGCAACCTG
GTGTTCAGGAGCACCACCAACAAGCTGGAGACCCGGAGGCAGAATGGGATCCGCGAGGCAGTCAGCCTCCTGAGGAGAACCGGGAACGCC
GAGATCCAGAAGCAGCTGACTGGGCTGCTCTGGAACCTGTCTTCCACTGACGAGCTGAAGGAGGAACTCATTGCCGACGCCCTGCCTGTT
CTGGCCGACCGCGTCATCATTCCCTTCTCTGGCTGGTGCGATGGCAATAGCAACATGTCCCGGGAAGTGGTGGACCCTGAGGTCTTCTTC
AATGCCACAGGCTGCTTGAGAAAGAGACTGGGCATGCGGGAGCTTCTGGCTCTTGTTCCGCAAAGGGCCACTAGTAGCAGGGTGAACCTG
AGCTCGGCCGATGCAGGCCGCCAGACCATGCGTAACTACTCAGGGCTCATTGATTCCCTCATGGCCTATGTCCAGAACTGTGTAGCGGCC
AGCCGCTGTGACGACAAGTCTGTGGAAAACTGCATGTGTGTTCTGCACAACCTCTCCTACCGCCTGGACGCCGAGGTGCCCACCCGCTAC
CGCCAGCTGGAGTATAACGCCCGCAACGCCTACACCGAGAAGTCCTCCACTGGCTGCTTCAGCAACAAGAGCGACAAGATGATGAACAAC
AACTATGACTGCCCCCTGCCTGAGGAAGAGACCAACCCCAAGGGCAGCGGCTGGTTGTACCATTCAGATGCCATCCGCACCTACCTGAAC
CTCATGGGCAAGAGCAAGAAAGATGCTACCCTGGAGGCCTGTGCTGGTGCCCTGCAGAACCTGACAGCCAGCAAGGGGCTGATGTCCAGT
GGCATGAGCCAGTTGATTGGGCTGAAGGAAAAGGGCCTGCCACAAATTGCCCGCCTCCTGCAATCTGGCAACTCTGATGTGGTGCGGTCC
GGAGCCTCCCTCCTGAGCAACATGTCCCGCCACCCTCTGCTGCACAGAGTGATGGGGAACCAGGTGTTCCCGGAGGTGACCAGGCTCCTC
ACCAGCCACACTGGCAATACCAGCAACTCCGAAGACATCTTGTCCTCGGCCTGCTACACTGTGAGGAACCTGATGGCCTCGCAGCCACAA
CTGGCCAAGCAGTACTTCTCCAGCAGCATGCTCAACAACATCATCAACCTGTGCCGAAGCAGTGCCTCACCCAAGGCCGCAGAAGCTGCC
CGGCTTCTCCTGTCTGACATGTGGTCCAGCAAGGAACTGCAGGGTGTCCTCAGACAGCAAGGTTTCGATAGGAACATGCTGGGAACCTTA

>In-frame_CNTN2_ENST00000331830_chr1_205022383_+_PKP1_ENST00000367324_chr1_201263070_+_2049nt
ATGGGGACAGCCACCAGGAGGAAGCCACACCTGCTGCTGGTAGCTGCTGTGGCCCTTGTCTCCTCTTCAGGTTCCATGTATGATGGCTTG
GCTGACAATTACAACTATGGGACCACCAGCAGGAGCAGCTACTACTCCAAGTTCCAGGCAGGGAATGGCTCATGGGGATATCCGATCTAC
AATGGAACCCTCAAGCGGGAGCCTGACAACAGGCGCTTCAGCTCCTACAGCCAGATGGAGAACTGGAGCCGGCACTACCCCCGGGGCAGC
TGTAACACCACCGGCGCAGGCAGCGACATCTGCTTCATGCAGAAAATCAAGGCGAGCCGCAGTGAGCCCGACCTCTACTGTGACCCACGG
GGCACCCTGCGCAAGGGCACGCTGGGCAGCAAGGGCCAGAAGACCACCCAGAACCGCTACAGCTTTTACAGCACCTGCAGTGGTCAGAAG
GCCATAAAGAAGTGCCCTGTGCGCCCGCCCTCTTGTGCCTCCAAGCAGGACCCTGTGTATATCCCGCCCATCTCCTGCAACAAGGACCTG
TCCTTTGGCCACTCTAGGGCCAGCTCCAAGATCTGCAGTGAGGACATCGAGTGCAGTGGGCTGACCATCCCCAAGGCTGTGCAGTACCTG
AGCTCCCAGGATGAGAAATACCAGGCCATTGGGGCCTATTACATCCAGCATACCTGCTTCCAGGATGAATCTGCCAAGCAACAGGTCTAT
CAGCTGGGAGGCATCTGCAAGCTGGTGGACCTCCTCCGCAGCCCCAACCAGAACGTCCAGCAGGCCGCGGCAGGGGCCCTGCGCAACCTG
GTGTTCAGGAGCACCACCAACAAGCTGGAGACCCGGAGGCAGAATGGGATCCGCGAGGCAGTCAGCCTCCTGAGGAGAACCGGGAACGCC
GAGATCCAGAAGCAGCTGACTGGGCTGCTCTGGAACCTGTCTTCCACTGACGAGCTGAAGGAGGAACTCATTGCCGACGCCCTGCCTGTT
CTGGCCGACCGCGTCATCATTCCCTTCTCTGGCTGGTGCGATGGCAATAGCAACATGTCCCGGGAAGTGGTGGACCCTGAGGTCTTCTTC
AATGCCACAGGCTGCTTGAGGAACCTGAGCTCGGCCGATGCAGGCCGCCAGACCATGCGTAACTACTCAGGGCTCATTGATTCCCTCATG
GCCTATGTCCAGAACTGTGTAGCGGCCAGCCGCTGTGACGACAAGTCTGTGGAAAACTGCATGTGTGTTCTGCACAACCTCTCCTACCGC
CTGGACGCCGAGGTGCCCACCCGCTACCGCCAGCTGGAGTATAACGCCCGCAACGCCTACACCGAGAAGTCCTCCACTGGCTGCTTCAGC
AACAAGAGCGACAAGATGATGAACAACAACTATGACTGCCCCCTGCCTGAGGAAGAGACCAACCCCAAGGGCAGCGGCTGGTTGTACCAT
TCAGATGCCATCCGCACCTACCTGAACCTCATGGGCAAGAGCAAGAAAGATGCTACCCTGGAGGCCTGTGCTGGTGCCCTGCAGAACCTG
ACAGCCAGCAAGGGGCTGATGTCCAGTGGCATGAGCCAGTTGATTGGGCTGAAGGAAAAGGGCCTGCCACAAATTGCCCGCCTCCTGCAA
TCTGGCAACTCTGATGTGGTGCGGTCCGGAGCCTCCCTCCTGAGCAACATGTCCCGCCACCCTCTGCTGCACAGAGTGATGGGGAACCAG
GTGTTCCCGGAGGTGACCAGGCTCCTCACCAGCCACACTGGCAATACCAGCAACTCCGAAGACATCTTGTCCTCGGCCTGCTACACTGTG
AGGAACCTGATGGCCTCGCAGCCACAACTGGCCAAGCAGTACTTCTCCAGCAGCATGCTCAACAACATCATCAACCTGTGCCGAAGCAGT
GCCTCACCCAAGGCCGCAGAAGCTGCCCGGCTTCTCCTGTCTGACATGTGGTCCAGCAAGGAACTGCAGGGTGTCCTCAGACAGCAAGGT

>In-frame_CNTN2_ENST00000331830_chr1_205022383_+_PKP1_ENST00000352845_chr1_201263070_+_2112nt
ATGGGGACAGCCACCAGGAGGAAGCCACACCTGCTGCTGGTAGCTGCTGTGGCCCTTGTCTCCTCTTCAGGTTCCATGTATGATGGCTTG
GCTGACAATTACAACTATGGGACCACCAGCAGGAGCAGCTACTACTCCAAGTTCCAGGCAGGGAATGGCTCATGGGGATATCCGATCTAC
AATGGAACCCTCAAGCGGGAGCCTGACAACAGGCGCTTCAGCTCCTACAGCCAGATGGAGAACTGGAGCCGGCACTACCCCCGGGGCAGC
TGTAACACCACCGGCGCAGGCAGCGACATCTGCTTCATGCAGAAAATCAAGGCGAGCCGCAGTGAGCCCGACCTCTACTGTGACCCACGG
GGCACCCTGCGCAAGGGCACGCTGGGCAGCAAGGGCCAGAAGACCACCCAGAACCGCTACAGCTTTTACAGCACCTGCAGTGGTCAGAAG
GCCATAAAGAAGTGCCCTGTGCGCCCGCCCTCTTGTGCCTCCAAGCAGGACCCTGTGTATATCCCGCCCATCTCCTGCAACAAGGACCTG
TCCTTTGGCCACTCTAGGGCCAGCTCCAAGATCTGCAGTGAGGACATCGAGTGCAGTGGGCTGACCATCCCCAAGGCTGTGCAGTACCTG
AGCTCCCAGGATGAGAAATACCAGGCCATTGGGGCCTATTACATCCAGCATACCTGCTTCCAGGATGAATCTGCCAAGCAACAGGTCTAT
CAGCTGGGAGGCATCTGCAAGCTGGTGGACCTCCTCCGCAGCCCCAACCAGAACGTCCAGCAGGCCGCGGCAGGGGCCCTGCGCAACCTG
GTGTTCAGGAGCACCACCAACAAGCTGGAGACCCGGAGGCAGAATGGGATCCGCGAGGCAGTCAGCCTCCTGAGGAGAACCGGGAACGCC
GAGATCCAGAAGCAGCTGACTGGGCTGCTCTGGAACCTGTCTTCCACTGACGAGCTGAAGGAGGAACTCATTGCCGACGCCCTGCCTGTT
CTGGCCGACCGCGTCATCATTCCCTTCTCTGGCTGGTGCGATGGCAATAGCAACATGTCCCGGGAAGTGGTGGACCCTGAGGTCTTCTTC
AATGCCACAGGCTGCTTGAGAAAGAGACTGGGCATGCGGGAGCTTCTGGCTCTTGTTCCGCAAAGGGCCACTAGTAGCAGGGTGAACCTG
AGCTCGGCCGATGCAGGCCGCCAGACCATGCGTAACTACTCAGGGCTCATTGATTCCCTCATGGCCTATGTCCAGAACTGTGTAGCGGCC
AGCCGCTGTGACGACAAGTCTGTGGAAAACTGCATGTGTGTTCTGCACAACCTCTCCTACCGCCTGGACGCCGAGGTGCCCACCCGCTAC
CGCCAGCTGGAGTATAACGCCCGCAACGCCTACACCGAGAAGTCCTCCACTGGCTGCTTCAGCAACAAGAGCGACAAGATGATGAACAAC
AACTATGACTGCCCCCTGCCTGAGGAAGAGACCAACCCCAAGGGCAGCGGCTGGTTGTACCATTCAGATGCCATCCGCACCTACCTGAAC
CTCATGGGCAAGAGCAAGAAAGATGCTACCCTGGAGGCCTGTGCTGGTGCCCTGCAGAACCTGACAGCCAGCAAGGGGCTGATGTCCAGT
GGCATGAGCCAGTTGATTGGGCTGAAGGAAAAGGGCCTGCCACAAATTGCCCGCCTCCTGCAATCTGGCAACTCTGATGTGGTGCGGTCC
GGAGCCTCCCTCCTGAGCAACATGTCCCGCCACCCTCTGCTGCACAGAGTGATGGGGAACCAGGTGTTCCCGGAGGTGACCAGGCTCCTC
ACCAGCCACACTGGCAATACCAGCAACTCCGAAGACATCTTGTCCTCGGCCTGCTACACTGTGAGGAACCTGATGGCCTCGCAGCCACAA
CTGGCCAAGCAGTACTTCTCCAGCAGCATGCTCAACAACATCATCAACCTGTGCCGAAGCAGTGCCTCACCCAAGGCCGCAGAAGCTGCC
CGGCTTCTCCTGTCTGACATGTGGTCCAGCAAGGAACTGCAGGGTGTCCTCAGACAGCAAGGTTTCGATAGGAACATGCTGGGAACCTTA


* Fusion transcript sequences (Full-length transcript).
>In-frame_CNTN2_ENST00000331830_chr1_205022383_+_PKP1_ENST00000263946_chr1_201263070_+_5348nt
GCTCCGGGCGCGCTCACACACACGCGCCCTCACCCGCCACCGCCGCCGCGGCCGCCGCCGCACCCGGACAGCGAGCGGCTGAGGCCGCCA
GGGCCCAAAGGACAGCGGCCCAGACAGGGGCTGGCGGCCCGGCCGGCCCCGGCTCACCGACTCGGGCAGCATCCACCTGCCCCAGCCAAC
ACCCTTCTCTCGCCCCAGGTCCTTTCTCAGCCTCCAGCTGGGCTGTCCCCAAGCTGAGCTGAGGCTCTTCTCCTCCGATCCCCACCTCTG
CCCGGACATCCACCATGGGGACAGCCACCAGGAGGAAGCCACACCTGCTGCTGGTAGCTGCTGTGGCCCTTGTCTCCTCTTCAGGTTCCA
TGTATGATGGCTTGGCTGACAATTACAACTATGGGACCACCAGCAGGAGCAGCTACTACTCCAAGTTCCAGGCAGGGAATGGCTCATGGG
GATATCCGATCTACAATGGAACCCTCAAGCGGGAGCCTGACAACAGGCGCTTCAGCTCCTACAGCCAGATGGAGAACTGGAGCCGGCACT
ACCCCCGGGGCAGCTGTAACACCACCGGCGCAGGCAGCGACATCTGCTTCATGCAGAAAATCAAGGCGAGCCGCAGTGAGCCCGACCTCT
ACTGTGACCCACGGGGCACCCTGCGCAAGGGCACGCTGGGCAGCAAGGGCCAGAAGACCACCCAGAACCGCTACAGCTTTTACAGCACCT
GCAGTGGTCAGAAGGCCATAAAGAAGTGCCCTGTGCGCCCGCCCTCTTGTGCCTCCAAGCAGGACCCTGTGTATATCCCGCCCATCTCCT
GCAACAAGGACCTGTCCTTTGGCCACTCTAGGGCCAGCTCCAAGATCTGCAGTGAGGACATCGAGTGCAGTGGGCTGACCATCCCCAAGG
CTGTGCAGTACCTGAGCTCCCAGGATGAGAAATACCAGGCCATTGGGGCCTATTACATCCAGCATACCTGCTTCCAGGATGAATCTGCCA
AGCAACAGGTCTATCAGCTGGGAGGCATCTGCAAGCTGGTGGACCTCCTCCGCAGCCCCAACCAGAACGTCCAGCAGGCCGCGGCAGGGG
CCCTGCGCAACCTGGTGTTCAGGAGCACCACCAACAAGCTGGAGACCCGGAGGCAGAATGGGATCCGCGAGGCAGTCAGCCTCCTGAGGA
GAACCGGGAACGCCGAGATCCAGAAGCAGCTGACTGGGCTGCTCTGGAACCTGTCTTCCACTGACGAGCTGAAGGAGGAACTCATTGCCG
ACGCCCTGCCTGTTCTGGCCGACCGCGTCATCATTCCCTTCTCTGGCTGGTGCGATGGCAATAGCAACATGTCCCGGGAAGTGGTGGACC
CTGAGGTCTTCTTCAATGCCACAGGCTGCTTGAGAAAGAGACTGGGCATGCGGGAGCTTCTGGCTCTTGTTCCGCAAAGGGCCACTAGTA
GCAGGGTGAACCTGAGCTCGGCCGATGCAGGCCGCCAGACCATGCGTAACTACTCAGGGCTCATTGATTCCCTCATGGCCTATGTCCAGA
ACTGTGTAGCGGCCAGCCGCTGTGACGACAAGTCTGTGGAAAACTGCATGTGTGTTCTGCACAACCTCTCCTACCGCCTGGACGCCGAGG
TGCCCACCCGCTACCGCCAGCTGGAGTATAACGCCCGCAACGCCTACACCGAGAAGTCCTCCACTGGCTGCTTCAGCAACAAGAGCGACA
AGATGATGAACAACAACTATGACTGCCCCCTGCCTGAGGAAGAGACCAACCCCAAGGGCAGCGGCTGGTTGTACCATTCAGATGCCATCC
GCACCTACCTGAACCTCATGGGCAAGAGCAAGAAAGATGCTACCCTGGAGGCCTGTGCTGGTGCCCTGCAGAACCTGACAGCCAGCAAGG
GGCTGATGTCCAGTGGCATGAGCCAGTTGATTGGGCTGAAGGAAAAGGGCCTGCCACAAATTGCCCGCCTCCTGCAATCTGGCAACTCTG
ATGTGGTGCGGTCCGGAGCCTCCCTCCTGAGCAACATGTCCCGCCACCCTCTGCTGCACAGAGTGATGGGGAACCAGGTGTTCCCGGAGG
TGACCAGGCTCCTCACCAGCCACACTGGCAATACCAGCAACTCCGAAGACATCTTGTCCTCGGCCTGCTACACTGTGAGGAACCTGATGG
CCTCGCAGCCACAACTGGCCAAGCAGTACTTCTCCAGCAGCATGCTCAACAACATCATCAACCTGTGCCGAAGCAGTGCCTCACCCAAGG
CCGCAGAAGCTGCCCGGCTTCTCCTGTCTGACATGTGGTCCAGCAAGGAACTGCAGGGTGTCCTCAGACAGCAAGGTTTCGATAGGAACA
TGCTGGGAACCTTAGCTGGGGCCAACAGCCTCAGGAACTTCACCTCCCGATTCTAAGAAGAGACTGTCCAAGCAAGTTAGGCTTGCAGGA
AGATATGACCCAGCTGAGAAGCCCTCAGGCCTCGCTGGATGGGGTTTTCTGTCCATCCTATGCAGTATTTGGGAAAGTTCACAAGAAACT
GAGAAGAAACCTAAAAACTGTGGATAGTGGAAAGATTTTTAGATTTTTTTTTTCCTTGGGGAAACTGGCAGGCAATGGGGGTTAGGGAGG
TTGGGGCGGTGGGGGCTTTCTTGAGTTAAAGGGGCTTATATGTGATGTCAATATTTCTTCCTCTGAGAAATGGTATATATATGTGTATAA
TGTAAGTGTGTGCATGCATGTGCGCGTGCATGTGTGTGTGTGTGAGTGTCTTAAAGCATAACCACAAACTGCAAAAAGCTAGGTAAGCTA
TTTTGTTGCAGCTCATAAGGTGGTGAAAAGGACTCTCCTGTGTTTCTTACTCATAGGCAAGGACAACATGTGCTTTTTGGTGAGCTGCTC
ATAATTCCTGAAATGTGTGGTGCCAGGGCAAGGGGGCCATCACTGCAGTCAGGCCCTCAGAGGAGTCCTGCAGGCTTCCTACCAGTGGTC
TCCAGGGGTGCAGGAGTAACTGGGGCTGGGCCAGCCTCCCCACTTACAAGGCTGCTTTCCAGGAAGGGAGGTCTGGTGTATCTCATGGGA
GAATCTGGGGTGTCTGTAATGTCACCCCTCCAGCAGCGCCACAAGGACTGAGGTTGGGTAGGTGTGGGGTTCCAGAGGACAGCAGGACAC
TCTCGCATACTTTGCCAAATGAGGCCTGCTCAGAGGAGTAGGAGCTGAAAGATGGTGCCTTCCACCCTCTTGGGCTGTGTGCCCATCAGA
GCAGGCTCAGCCTGCAAAGGCCCTGCATTCAGAGGTCTTGTAATCTACTTGTTGCAGGAGAAAGAAGGTAAAAAATGATTTTTTTAAGAA
AAGCTATTTTATTGCAGCTCTTTCCCAAGAGCTGTTCTGGGAATGGCTGGTCTTCATATTCCCAGTGGAGAGGGGAACAAGTGGGGCTGG
GCATATACCTATTCCGGCTTCTAGTGGGATGGAGTTGGGGTATAGAAATTAACCAGGAAGATGTTTCCACCAAGCCTGCTGTGAGTCAAT
TGAGGGAGTGTTTGGGGTCCCAGGAGACTTGGACGGGGGGAGTTTGGGTAGACTAGGAAAGGAAAGTGCCATATCAGGGTACCGGTACCG
GCAAGCTCACATCTCAGCCAGGGGCCATGCCCCACTTCCCCTGACCCCAGCTGTCTTGTCTCCACTCTGTGAAACCCACAGGGGATGTGA
TAAACAGGGCTATTAGGGGTATCAGCCACGTCGAGCCCCCAGACTCTGTGCACTTCAGACCAGCAGCAGCAGGAGGGCTCCCGAGGGCCT
TATGAGAAAACCTGTGTGGACATCCCTTGGTGTACACTAAGACAGAGCAGAGCCCAGCGCTCCCAAGCCTTCCTCCTTCCAGCTTCTACC
TCCATGCTAGCATTGCTGGTGTTAGAGAGGAATTAACTTCCTGGTCTGTGCCCTTCTCTAGAAGAATATAAGATGCTCCTCCTCCTCACC
CCTTCTCAGCCTCCTCCCAAGTCTTCCTCTTCTGCACCACCCCCGAGTCCAAACCCACCTCTTGCCCCAGCATTCAGGCTGGAAAACACT
GATGTGGACTCAGTATGATAACTGAGATGGGGGACGCCAGACATGTGAGGACGCTGTCCTCCGAGAGGTGTCCCCGGCTGTTAGCCAGCT
GTGCTGTGGTGCTGTGGGTCTGTCATACCCTCCCTTGCTTCTGTTCACACTGGGAGGCCCACTCCTGGCTCACCTCTCCCTCTCAGGGAC
CCACGTGGGAGCCTGGATCCCTGGACTGTCCTGGGCATAGGTTTCAGGGGCCTCCTTTGTTGTCATCAGAACCCAGAGGAATTCTTCTCC
TAAAAAATACGTATGGCATACCAATCTGTGCGGGGCAGTGTCCTAAGCACTTAGACTACATCAGGGAAGAACACAGACCACATCCCTGTC
CTCATGCGGCTTATGTTTTCTGGAGGAAAGTGGAGACACAAGTCCTTGGCTTTAGGGCTCCCCCGGCTGGGGGCTGTGCAGTCCGGTCAG
GGCGGGAGGGGAAATGCACCGCTGCATGTGAACCTTACCAGCCCAGGCGGATGCCCCTTCCCCTTAGCACTACCCTGGCCTCCTGCATCC
CCTCGCCTCATGTTCCTCCCACCTTCAAAGAATGAAGAGCCCCATGGGCCCAGCCCCTGCCCTGGGAACCAGGCAGCCTTCCAGACCTCA
GGGGCTGAGGCAGACTATTAGGGCAGGGCTGACTTTGGTGACACTGCCCATTCCCTCTCAGGCCAGCTCAGGTCACCCGGGCCTCTGACC
CAGGCCTGTCACTTTGAGAGGGGCAAAACTGAGAGGGGCTTTTCCTAGAGAAAGAGAACAAGGAGCTTGCCAGGCTTCATGTAGCCGACA
CACGTCTCAGGATTTTAAGTCCACATTGGCCTCACACTACCAGGGCCAATGCCCAAAATAAGGAGTTCCAATTTGGGGCCAAATGAGGAA
GGACACAGACTCTGCCCTGGGATCTCCTGTGCTAGCGGCCAATGACAAATCCAGTCATTGGCCACCAGCCACCTCTGCAGTGGGGACCAC
ACTAGCAGCCCTGACTCCACACTCCTCCTGGGGACCCAAGAGGCAGTGTTGCTGTCTGCATGTCCACCTTGGAATCTGGCTGAACTGGCT
GGCAGGACCAAGACTGCGGCTGGGGTGGGCAGGGAAGGGAAGCCGGGGGCTGCTGTGAGGGATCTTGGAGCTTCCCTGTAGCCCACCTTC
CCCTTGCTTCATGTTTGTAGAGGAACCTTGTGCCGGCCAGGCCCAGTTTCCTTGTGTGATACACTAATGTATTTGCTTTTTTTGGAAATA

>In-frame_CNTN2_ENST00000331830_chr1_205022383_+_PKP1_ENST00000367324_chr1_201263070_+_5285nt
GCTCCGGGCGCGCTCACACACACGCGCCCTCACCCGCCACCGCCGCCGCGGCCGCCGCCGCACCCGGACAGCGAGCGGCTGAGGCCGCCA
GGGCCCAAAGGACAGCGGCCCAGACAGGGGCTGGCGGCCCGGCCGGCCCCGGCTCACCGACTCGGGCAGCATCCACCTGCCCCAGCCAAC
ACCCTTCTCTCGCCCCAGGTCCTTTCTCAGCCTCCAGCTGGGCTGTCCCCAAGCTGAGCTGAGGCTCTTCTCCTCCGATCCCCACCTCTG
CCCGGACATCCACCATGGGGACAGCCACCAGGAGGAAGCCACACCTGCTGCTGGTAGCTGCTGTGGCCCTTGTCTCCTCTTCAGGTTCCA
TGTATGATGGCTTGGCTGACAATTACAACTATGGGACCACCAGCAGGAGCAGCTACTACTCCAAGTTCCAGGCAGGGAATGGCTCATGGG
GATATCCGATCTACAATGGAACCCTCAAGCGGGAGCCTGACAACAGGCGCTTCAGCTCCTACAGCCAGATGGAGAACTGGAGCCGGCACT
ACCCCCGGGGCAGCTGTAACACCACCGGCGCAGGCAGCGACATCTGCTTCATGCAGAAAATCAAGGCGAGCCGCAGTGAGCCCGACCTCT
ACTGTGACCCACGGGGCACCCTGCGCAAGGGCACGCTGGGCAGCAAGGGCCAGAAGACCACCCAGAACCGCTACAGCTTTTACAGCACCT
GCAGTGGTCAGAAGGCCATAAAGAAGTGCCCTGTGCGCCCGCCCTCTTGTGCCTCCAAGCAGGACCCTGTGTATATCCCGCCCATCTCCT
GCAACAAGGACCTGTCCTTTGGCCACTCTAGGGCCAGCTCCAAGATCTGCAGTGAGGACATCGAGTGCAGTGGGCTGACCATCCCCAAGG
CTGTGCAGTACCTGAGCTCCCAGGATGAGAAATACCAGGCCATTGGGGCCTATTACATCCAGCATACCTGCTTCCAGGATGAATCTGCCA
AGCAACAGGTCTATCAGCTGGGAGGCATCTGCAAGCTGGTGGACCTCCTCCGCAGCCCCAACCAGAACGTCCAGCAGGCCGCGGCAGGGG
CCCTGCGCAACCTGGTGTTCAGGAGCACCACCAACAAGCTGGAGACCCGGAGGCAGAATGGGATCCGCGAGGCAGTCAGCCTCCTGAGGA
GAACCGGGAACGCCGAGATCCAGAAGCAGCTGACTGGGCTGCTCTGGAACCTGTCTTCCACTGACGAGCTGAAGGAGGAACTCATTGCCG
ACGCCCTGCCTGTTCTGGCCGACCGCGTCATCATTCCCTTCTCTGGCTGGTGCGATGGCAATAGCAACATGTCCCGGGAAGTGGTGGACC
CTGAGGTCTTCTTCAATGCCACAGGCTGCTTGAGGAACCTGAGCTCGGCCGATGCAGGCCGCCAGACCATGCGTAACTACTCAGGGCTCA
TTGATTCCCTCATGGCCTATGTCCAGAACTGTGTAGCGGCCAGCCGCTGTGACGACAAGTCTGTGGAAAACTGCATGTGTGTTCTGCACA
ACCTCTCCTACCGCCTGGACGCCGAGGTGCCCACCCGCTACCGCCAGCTGGAGTATAACGCCCGCAACGCCTACACCGAGAAGTCCTCCA
CTGGCTGCTTCAGCAACAAGAGCGACAAGATGATGAACAACAACTATGACTGCCCCCTGCCTGAGGAAGAGACCAACCCCAAGGGCAGCG
GCTGGTTGTACCATTCAGATGCCATCCGCACCTACCTGAACCTCATGGGCAAGAGCAAGAAAGATGCTACCCTGGAGGCCTGTGCTGGTG
CCCTGCAGAACCTGACAGCCAGCAAGGGGCTGATGTCCAGTGGCATGAGCCAGTTGATTGGGCTGAAGGAAAAGGGCCTGCCACAAATTG
CCCGCCTCCTGCAATCTGGCAACTCTGATGTGGTGCGGTCCGGAGCCTCCCTCCTGAGCAACATGTCCCGCCACCCTCTGCTGCACAGAG
TGATGGGGAACCAGGTGTTCCCGGAGGTGACCAGGCTCCTCACCAGCCACACTGGCAATACCAGCAACTCCGAAGACATCTTGTCCTCGG
CCTGCTACACTGTGAGGAACCTGATGGCCTCGCAGCCACAACTGGCCAAGCAGTACTTCTCCAGCAGCATGCTCAACAACATCATCAACC
TGTGCCGAAGCAGTGCCTCACCCAAGGCCGCAGAAGCTGCCCGGCTTCTCCTGTCTGACATGTGGTCCAGCAAGGAACTGCAGGGTGTCC
TCAGACAGCAAGGTTTCGATAGGAACATGCTGGGAACCTTAGCTGGGGCCAACAGCCTCAGGAACTTCACCTCCCGATTCTAAGAAGAGA
CTGTCCAAGCAAGTTAGGCTTGCAGGAAGATATGACCCAGCTGAGAAGCCCTCAGGCCTCGCTGGATGGGGTTTTCTGTCCATCCTATGC
AGTATTTGGGAAAGTTCACAAGAAACTGAGAAGAAACCTAAAAACTGTGGATAGTGGAAAGATTTTTAGATTTTTTTTTTCCTTGGGGAA
ACTGGCAGGCAATGGGGGTTAGGGAGGTTGGGGCGGTGGGGGCTTTCTTGAGTTAAAGGGGCTTATATGTGATGTCAATATTTCTTCCTC
TGAGAAATGGTATATATATGTGTATAATGTAAGTGTGTGCATGCATGTGCGCGTGCATGTGTGTGTGTGTGAGTGTCTTAAAGCATAACC
ACAAACTGCAAAAAGCTAGGTAAGCTATTTTGTTGCAGCTCATAAGGTGGTGAAAAGGACTCTCCTGTGTTTCTTACTCATAGGCAAGGA
CAACATGTGCTTTTTGGTGAGCTGCTCATAATTCCTGAAATGTGTGGTGCCAGGGCAAGGGGGCCATCACTGCAGTCAGGCCCTCAGAGG
AGTCCTGCAGGCTTCCTACCAGTGGTCTCCAGGGGTGCAGGAGTAACTGGGGCTGGGCCAGCCTCCCCACTTACAAGGCTGCTTTCCAGG
AAGGGAGGTCTGGTGTATCTCATGGGAGAATCTGGGGTGTCTGTAATGTCACCCCTCCAGCAGCGCCACAAGGACTGAGGTTGGGTAGGT
GTGGGGTTCCAGAGGACAGCAGGACACTCTCGCATACTTTGCCAAATGAGGCCTGCTCAGAGGAGTAGGAGCTGAAAGATGGTGCCTTCC
ACCCTCTTGGGCTGTGTGCCCATCAGAGCAGGCTCAGCCTGCAAAGGCCCTGCATTCAGAGGTCTTGTAATCTACTTGTTGCAGGAGAAA
GAAGGTAAAAAATGATTTTTTTAAGAAAAGCTATTTTATTGCAGCTCTTTCCCAAGAGCTGTTCTGGGAATGGCTGGTCTTCATATTCCC
AGTGGAGAGGGGAACAAGTGGGGCTGGGCATATACCTATTCCGGCTTCTAGTGGGATGGAGTTGGGGTATAGAAATTAACCAGGAAGATG
TTTCCACCAAGCCTGCTGTGAGTCAATTGAGGGAGTGTTTGGGGTCCCAGGAGACTTGGACGGGGGGAGTTTGGGTAGACTAGGAAAGGA
AAGTGCCATATCAGGGTACCGGTACCGGCAAGCTCACATCTCAGCCAGGGGCCATGCCCCACTTCCCCTGACCCCAGCTGTCTTGTCTCC
ACTCTGTGAAACCCACAGGGGATGTGATAAACAGGGCTATTAGGGGTATCAGCCACGTCGAGCCCCCAGACTCTGTGCACTTCAGACCAG
CAGCAGCAGGAGGGCTCCCGAGGGCCTTATGAGAAAACCTGTGTGGACATCCCTTGGTGTACACTAAGACAGAGCAGAGCCCAGCGCTCC
CAAGCCTTCCTCCTTCCAGCTTCTACCTCCATGCTAGCATTGCTGGTGTTAGAGAGGAATTAACTTCCTGGTCTGTGCCCTTCTCTAGAA
GAATATAAGATGCTCCTCCTCCTCACCCCTTCTCAGCCTCCTCCCAAGTCTTCCTCTTCTGCACCACCCCCGAGTCCAAACCCACCTCTT
GCCCCAGCATTCAGGCTGGAAAACACTGATGTGGACTCAGTATGATAACTGAGATGGGGGACGCCAGACATGTGAGGACGCTGTCCTCCG
AGAGGTGTCCCCGGCTGTTAGCCAGCTGTGCTGTGGTGCTGTGGGTCTGTCATACCCTCCCTTGCTTCTGTTCACACTGGGAGGCCCACT
CCTGGCTCACCTCTCCCTCTCAGGGACCCACGTGGGAGCCTGGATCCCTGGACTGTCCTGGGCATAGGTTTCAGGGGCCTCCTTTGTTGT
CATCAGAACCCAGAGGAATTCTTCTCCTAAAAAATACGTATGGCATACCAATCTGTGCGGGGCAGTGTCCTAAGCACTTAGACTACATCA
GGGAAGAACACAGACCACATCCCTGTCCTCATGCGGCTTATGTTTTCTGGAGGAAAGTGGAGACACAAGTCCTTGGCTTTAGGGCTCCCC
CGGCTGGGGGCTGTGCAGTCCGGTCAGGGCGGGAGGGGAAATGCACCGCTGCATGTGAACCTTACCAGCCCAGGCGGATGCCCCTTCCCC
TTAGCACTACCCTGGCCTCCTGCATCCCCTCGCCTCATGTTCCTCCCACCTTCAAAGAATGAAGAGCCCCATGGGCCCAGCCCCTGCCCT
GGGAACCAGGCAGCCTTCCAGACCTCAGGGGCTGAGGCAGACTATTAGGGCAGGGCTGACTTTGGTGACACTGCCCATTCCCTCTCAGGC
CAGCTCAGGTCACCCGGGCCTCTGACCCAGGCCTGTCACTTTGAGAGGGGCAAAACTGAGAGGGGCTTTTCCTAGAGAAAGAGAACAAGG
AGCTTGCCAGGCTTCATGTAGCCGACACACGTCTCAGGATTTTAAGTCCACATTGGCCTCACACTACCAGGGCCAATGCCCAAAATAAGG
AGTTCCAATTTGGGGCCAAATGAGGAAGGACACAGACTCTGCCCTGGGATCTCCTGTGCTAGCGGCCAATGACAAATCCAGTCATTGGCC
ACCAGCCACCTCTGCAGTGGGGACCACACTAGCAGCCCTGACTCCACACTCCTCCTGGGGACCCAAGAGGCAGTGTTGCTGTCTGCATGT
CCACCTTGGAATCTGGCTGAACTGGCTGGCAGGACCAAGACTGCGGCTGGGGTGGGCAGGGAAGGGAAGCCGGGGGCTGCTGTGAGGGAT
CTTGGAGCTTCCCTGTAGCCCACCTTCCCCTTGCTTCATGTTTGTAGAGGAACCTTGTGCCGGCCAGGCCCAGTTTCCTTGTGTGATACA

>In-frame_CNTN2_ENST00000331830_chr1_205022383_+_PKP1_ENST00000352845_chr1_201263070_+_2396nt
GCTCCGGGCGCGCTCACACACACGCGCCCTCACCCGCCACCGCCGCCGCGGCCGCCGCCGCACCCGGACAGCGAGCGGCTGAGGCCGCCA
GGGCCCAAAGGACAGCGGCCCAGACAGGGGCTGGCGGCCCGGCCGGCCCCGGCTCACCGACTCGGGCAGCATCCACCTGCCCCAGCCAAC
ACCCTTCTCTCGCCCCAGGTCCTTTCTCAGCCTCCAGCTGGGCTGTCCCCAAGCTGAGCTGAGGCTCTTCTCCTCCGATCCCCACCTCTG
CCCGGACATCCACCATGGGGACAGCCACCAGGAGGAAGCCACACCTGCTGCTGGTAGCTGCTGTGGCCCTTGTCTCCTCTTCAGGTTCCA
TGTATGATGGCTTGGCTGACAATTACAACTATGGGACCACCAGCAGGAGCAGCTACTACTCCAAGTTCCAGGCAGGGAATGGCTCATGGG
GATATCCGATCTACAATGGAACCCTCAAGCGGGAGCCTGACAACAGGCGCTTCAGCTCCTACAGCCAGATGGAGAACTGGAGCCGGCACT
ACCCCCGGGGCAGCTGTAACACCACCGGCGCAGGCAGCGACATCTGCTTCATGCAGAAAATCAAGGCGAGCCGCAGTGAGCCCGACCTCT
ACTGTGACCCACGGGGCACCCTGCGCAAGGGCACGCTGGGCAGCAAGGGCCAGAAGACCACCCAGAACCGCTACAGCTTTTACAGCACCT
GCAGTGGTCAGAAGGCCATAAAGAAGTGCCCTGTGCGCCCGCCCTCTTGTGCCTCCAAGCAGGACCCTGTGTATATCCCGCCCATCTCCT
GCAACAAGGACCTGTCCTTTGGCCACTCTAGGGCCAGCTCCAAGATCTGCAGTGAGGACATCGAGTGCAGTGGGCTGACCATCCCCAAGG
CTGTGCAGTACCTGAGCTCCCAGGATGAGAAATACCAGGCCATTGGGGCCTATTACATCCAGCATACCTGCTTCCAGGATGAATCTGCCA
AGCAACAGGTCTATCAGCTGGGAGGCATCTGCAAGCTGGTGGACCTCCTCCGCAGCCCCAACCAGAACGTCCAGCAGGCCGCGGCAGGGG
CCCTGCGCAACCTGGTGTTCAGGAGCACCACCAACAAGCTGGAGACCCGGAGGCAGAATGGGATCCGCGAGGCAGTCAGCCTCCTGAGGA
GAACCGGGAACGCCGAGATCCAGAAGCAGCTGACTGGGCTGCTCTGGAACCTGTCTTCCACTGACGAGCTGAAGGAGGAACTCATTGCCG
ACGCCCTGCCTGTTCTGGCCGACCGCGTCATCATTCCCTTCTCTGGCTGGTGCGATGGCAATAGCAACATGTCCCGGGAAGTGGTGGACC
CTGAGGTCTTCTTCAATGCCACAGGCTGCTTGAGAAAGAGACTGGGCATGCGGGAGCTTCTGGCTCTTGTTCCGCAAAGGGCCACTAGTA
GCAGGGTGAACCTGAGCTCGGCCGATGCAGGCCGCCAGACCATGCGTAACTACTCAGGGCTCATTGATTCCCTCATGGCCTATGTCCAGA
ACTGTGTAGCGGCCAGCCGCTGTGACGACAAGTCTGTGGAAAACTGCATGTGTGTTCTGCACAACCTCTCCTACCGCCTGGACGCCGAGG
TGCCCACCCGCTACCGCCAGCTGGAGTATAACGCCCGCAACGCCTACACCGAGAAGTCCTCCACTGGCTGCTTCAGCAACAAGAGCGACA
AGATGATGAACAACAACTATGACTGCCCCCTGCCTGAGGAAGAGACCAACCCCAAGGGCAGCGGCTGGTTGTACCATTCAGATGCCATCC
GCACCTACCTGAACCTCATGGGCAAGAGCAAGAAAGATGCTACCCTGGAGGCCTGTGCTGGTGCCCTGCAGAACCTGACAGCCAGCAAGG
GGCTGATGTCCAGTGGCATGAGCCAGTTGATTGGGCTGAAGGAAAAGGGCCTGCCACAAATTGCCCGCCTCCTGCAATCTGGCAACTCTG
ATGTGGTGCGGTCCGGAGCCTCCCTCCTGAGCAACATGTCCCGCCACCCTCTGCTGCACAGAGTGATGGGGAACCAGGTGTTCCCGGAGG
TGACCAGGCTCCTCACCAGCCACACTGGCAATACCAGCAACTCCGAAGACATCTTGTCCTCGGCCTGCTACACTGTGAGGAACCTGATGG
CCTCGCAGCCACAACTGGCCAAGCAGTACTTCTCCAGCAGCATGCTCAACAACATCATCAACCTGTGCCGAAGCAGTGCCTCACCCAAGG
CCGCAGAAGCTGCCCGGCTTCTCCTGTCTGACATGTGGTCCAGCAAGGAACTGCAGGGTGTCCTCAGACAGCAAGGTTTCGATAGGAACA


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FusionGenePPI for CNTN2_PKP1


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
CNTN2CNTNAP2, NRCAM, L1CAM, CNTN1, NCAN, EGFR, IKBKGPKP1DSG1, VIM, KRT14, KRT8, DSP, USP1, GOSR1, WIPI1, DSC1, UCHL5, TARDBP, TUBG1, TENC1, CCDC8, SUZ12, BMI1, COASY, CIDEA, RSG1, CA8, CCDC51, TFG, SGOL2, RBM24, HNRNPA1, MYC, FOXI2, MCM2, CCDC82, FBXL4, FCF1, KIF3A, CYLD, GTF2IRD1


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for CNTN2_PKP1


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for CNTN2_PKP1


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
TgenePKP1C2239176Liver carcinoma1CTD_human