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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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Fusion gene ID: 760

FusionGeneSummary for ADAMTS9_CHL1

check button Fusion gene summary
Fusion gene informationFusion gene name: ADAMTS9_CHL1
Fusion gene ID: 760
HgeneTgene
Gene symbol

ADAMTS9

CHL1

Gene ID

56999

10752

Gene nameADAM metallopeptidase with thrombospondin type 1 motif 9cell adhesion molecule L1 like
Synonyms-CALL|L1CAM2
Cytomap

3p14.1

3p26.3

Type of geneprotein-codingprotein-coding
DescriptionA disintegrin and metalloproteinase with thrombospondin motifs 9a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 9neural cell adhesion molecule L1-like proteinL1 cell adhesion molecule 2cell adhesion molecule with homology to L1CAM (close homolog of L1)cell adhesion molecule with homology to L1CAM (close homologue of L1)close homolog of L1
Modification date2018041520180519
UniProtAcc

Q9P2N4

O00533

Ensembl transtripts involved in fusion geneENST00000295903, ENST00000498707, 
ENST00000467257, ENST00000459780, 
ENST00000256509, ENST00000397491, 
ENST00000489224, 
Fusion gene scores* DoF score4 X 4 X 3=484 X 4 X 4=64
# samples 44
** MAII scorelog2(4/48*10)=-0.263034405833794
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(4/64*10)=-0.678071905112638
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: ADAMTS9 [Title/Abstract] AND CHL1 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotationTumor suppressor gene involved fusion gene, retained protein feature but frameshift.
DDR (DNA damage repair) gene involved fusion gene, in-frame but not retained their domain.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneADAMTS9

GO:0006508

proteolysis

12514189


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGARVLUADTCGA-62-8395-01AADAMTS9chr3

64619374

-CHL1chr3

447178

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
Frame-shiftENST00000295903ENST00000256509ADAMTS9chr3

64619374

-CHL1chr3

447178

+
In-frameENST00000295903ENST00000397491ADAMTS9chr3

64619374

-CHL1chr3

447178

+
5CDS-intronENST00000295903ENST00000489224ADAMTS9chr3

64619374

-CHL1chr3

447178

+
Frame-shiftENST00000498707ENST00000256509ADAMTS9chr3

64619374

-CHL1chr3

447178

+
In-frameENST00000498707ENST00000397491ADAMTS9chr3

64619374

-CHL1chr3

447178

+
5CDS-intronENST00000498707ENST00000489224ADAMTS9chr3

64619374

-CHL1chr3

447178

+
intron-3CDSENST00000467257ENST00000256509ADAMTS9chr3

64619374

-CHL1chr3

447178

+
intron-3CDSENST00000467257ENST00000397491ADAMTS9chr3

64619374

-CHL1chr3

447178

+
intron-intronENST00000467257ENST00000489224ADAMTS9chr3

64619374

-CHL1chr3

447178

+
intron-3CDSENST00000459780ENST00000256509ADAMTS9chr3

64619374

-CHL1chr3

447178

+
intron-3CDSENST00000459780ENST00000397491ADAMTS9chr3

64619374

-CHL1chr3

447178

+
intron-intronENST00000459780ENST00000489224ADAMTS9chr3

64619374

-CHL1chr3

447178

+

Top

FusionProtFeatures for ADAMTS9_CHL1


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
ADAMTS9

Q9P2N4

CHL1

O00533

Cleaves the large aggregating proteoglycans, aggrecan(at the '1838-Glu-|-Ala-1839' site) and versican (at the '1428-Glu-|-Ala-1429' site). Has a protease-independent function inpromoting the transport from the endoplasmic reticulum to theGolgi apparatus of a variety of secretory cargos.{ECO:0000269|PubMed:12514189, ECO:0000269|PubMed:22419820}. Extracellular matrix and cell adhesion protein thatplays a role in nervous system development and in synapticplasticity. Both soluble and membranous forms promote neuriteoutgrowth of cerebellar and hippocampal neurons and suppressneuronal cell death. Plays a role in neuronal positioning ofpyramidal neurons and in regulation of both the number ofinterneurons and the efficacy of GABAergic synapses. May play arole in regulating cell migration in nerve regeneration andcortical development. Potentiates integrin-dependent cellmigration towards extracellular matrix proteins. Recruits ANK3 tothe plasma membrane (By similarity). {ECO:0000250}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


Top

FusionGeneSequence for ADAMTS9_CHL1


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.
>In-frame_ADAMTS9_ENST00000295903_chr3_64619374_-_CHL1_ENST00000397491_chr3_447178_+_723aa
MQFVSWATLLTLLVRDLAEMGSPDAAAAVRKDRLHPRQVKLLETLSEYEIVSPIRVNALGEPFPTNVHFKRTRRSINSATDPWPAFASSS
SSSTSSQAHYRLSAFGQQFLFNLTANAGFIAPLFTVTLLGTPGVNQTKFYSEEEAELKHCFYKGYVNTNSEHTAVISLCSGMLGTFRSHD
GDYFIEPLQSMDEQEDEEEQNKPHIIYRRSAPQREPSTGRHACDTSEHKNRHSKDKKKTRARKWGERINLAGDVAALNSGLATEAFSAYG
NKTDNTREKRTHRRTKRFLSYPRFVEVLVVADNRMVSYHGENLQHYILTLMSIDGPSISFNAQTTLKNFCQWQHSKNSPGGIHHDTAVLL
TRQDICRAHDKCDTLGLAELGTICDPYRSCSISEDSGLSTAFTIAHELGHVFNMPHDDNNKCKEEGVKSPQHVMAPTLNFYTNPWMWSKC
SRKYITEFLDTGYGECLLNEPESRPYPLPVQLPGILYNVNKQCELIFGPGSQVCPYMMQCRRLWCNNVNGVHKGCRTQHTPWADGTECEP
GKHCKYGFCVPKEMDVPVTDGSWGSWSPFGTCSRTCGGGIKTAIRECNRPEPKNGGKYCVGRRMKFKSCNTEPCLKQKRDFRDEQCAHFD
GKHFNINGLLPNVRWVPKYSGMTVMKSLSKEAFGPLIGICSLLKVLTAXSNTERETMVSSVKMDHLLVPTLDLRRRDLLKAMEVLQQLFP

>In-frame_ADAMTS9_ENST00000498707_chr3_64619374_-_CHL1_ENST00000397491_chr3_447178_+_751aa
MQFVSWATLLTLLVRDLAEMGSPDAAAAVRKDRLHPRQVKLLETLSEYEIVSPIRVNALGEPFPTNVHFKRTRRSINSATDPWPAFASSS
SSSTSSQAHYRLSAFGQQFLFNLTANAGFIAPLFTVTLLGTPGVNQTKFYSEEEAELKHCFYKGYVNTNSEHTAVISLCSGMLGTFRSHD
GDYFIEPLQSMDEQEDEEEQNKPHIIYRRSAPQREPSTGRHACDTSEHKNRHSKDKKKTRARKWGERINLAGDVAALNSGLATEAFSAYG
NKTDNTREKRTHRRTKRFLSYPRFVEVLVVADNRMVSYHGENLQHYILTLMSIVASIYKDPSIGNLINIVIVNLIVIHNEQDGPSISFNA
QTTLKNFCQWQHSKNSPGGIHHDTAVLLTRQDICRAHDKCDTLGLAELGTICDPYRSCSISEDSGLSTAFTIAHELGHVFNMPHDDNNKC
KEEGVKSPQHVMAPTLNFYTNPWMWSKCSRKYITEFLDTGYGECLLNEPESRPYPLPVQLPGILYNVNKQCELIFGPGSQVCPYMMQCRR
LWCNNVNGVHKGCRTQHTPWADGTECEPGKHCKYGFCVPKEMDVPVTDGSWGSWSPFGTCSRTCGGGIKTAIRECNRPEPKNGGKYCVGR
RMKFKSCNTEPCLKQKRDFRDEQCAHFDGKHFNINGLLPNVRWVPKYSGMTVMKSLSKEAFGPLIGICSLLKVLTAXSNTERETMVSSVK


* Fusion transcript sequences (only coding sequence (CDS) region).
>In-frame_ADAMTS9_ENST00000295903_chr3_64619374_-_CHL1_ENST00000397491_chr3_447178_+_2171nt
ATGCAGTTTGTATCCTGGGCCACACTGCTAACGCTCCTGGTGCGGGACCTGGCCGAGATGGGGAGCCCAGACGCCGCGGCGGCCGTGCGC
AAGGACAGGCTGCACCCGAGGCAAGTGAAATTATTAGAGACCCTGAGCGAATACGAAATCGTGTCTCCCATCCGAGTGAACGCTCTCGGA
GAACCCTTTCCCACGAACGTCCACTTCAAAAGAACGCGACGGAGCATTAACTCTGCCACTGACCCCTGGCCTGCCTTCGCCTCCTCCTCT
TCCTCCTCTACCTCCTCCCAGGCGCATTACCGCCTCTCTGCCTTCGGCCAGCAGTTTCTATTTAATCTCACCGCCAATGCCGGATTTATC
GCTCCACTGTTCACTGTCACCCTCCTCGGGACGCCCGGGGTGAATCAGACCAAGTTTTATTCCGAAGAGGAAGCGGAACTCAAGCACTGT
TTCTACAAAGGCTATGTCAATACCAACTCCGAGCACACGGCCGTCATCAGCCTCTGCTCAGGAATGCTGGGCACATTCCGGTCTCATGAT
GGGGATTATTTTATTGAACCACTACAGTCTATGGATGAACAAGAAGATGAAGAGGAACAAAACAAACCCCACATCATTTATAGGCGCAGC
GCCCCCCAGAGAGAGCCCTCAACAGGAAGGCATGCATGTGACACCTCAGAACACAAAAATAGGCACAGTAAAGACAAGAAGAAAACCAGA
GCAAGAAAATGGGGAGAAAGGATTAACCTGGCTGGTGACGTAGCAGCATTAAACAGCGGCTTAGCAACAGAGGCATTTTCTGCTTATGGT
AATAAGACGGACAACACAAGAGAAAAGAGGACCCACAGAAGGACAAAACGTTTTTTATCCTATCCACGGTTTGTAGAAGTCTTGGTGGTG
GCAGACAACAGAATGGTTTCATACCATGGAGAAAACCTTCAACACTATATTTTAACTTTAATGTCAATTGATGGGCCTTCCATATCTTTT
AATGCTCAGACAACATTAAAAAACTTTTGCCAGTGGCAGCATTCGAAGAACAGTCCAGGTGGAATCCATCATGATACTGCTGTTCTCTTA
ACAAGACAGGATATCTGCAGAGCTCACGACAAATGTGATACCTTAGGCCTGGCTGAACTGGGAACCATTTGTGATCCCTATAGAAGCTGT
TCTATTAGTGAAGATAGTGGATTGAGTACAGCTTTTACGATCGCCCATGAGCTGGGCCATGTGTTTAACATGCCTCATGATGACAACAAC
AAATGTAAAGAAGAAGGAGTTAAGAGTCCCCAGCATGTCATGGCTCCAACACTGAACTTCTACACCAACCCCTGGATGTGGTCAAAGTGT
AGTCGAAAATATATCACTGAGTTTTTAGACACTGGTTATGGCGAGTGTTTGCTTAACGAACCTGAATCCAGACCCTACCCTTTGCCTGTC
CAACTGCCAGGCATCCTTTACAACGTGAATAAACAATGTGAATTGATTTTTGGACCAGGTTCTCAGGTGTGCCCATATATGATGCAGTGC
AGACGGCTCTGGTGCAATAACGTCAATGGAGTACACAAAGGCTGCCGGACTCAGCACACACCCTGGGCCGATGGGACGGAGTGCGAGCCT
GGAAAGCACTGCAAGTATGGATTTTGTGTTCCCAAAGAAATGGATGTCCCCGTGACAGATGGATCCTGGGGAAGTTGGAGTCCCTTTGGA
ACCTGCTCCAGAACATGTGGAGGGGGCATCAAAACAGCCATTCGAGAGTGCAACAGACCAGAACCAAAAAATGGTGGAAAATACTGTGTA
GGACGTAGAATGAAATTTAAGTCCTGCAACACGGAGCCATGTCTCAAGCAGAAGCGAGACTTCCGAGATGAACAGTGTGCTCACTTTGAC
GGGAAGCATTTTAACATCAACGGTCTGCTTCCCAATGTGCGCTGGGTCCCTAAATACAGTGGAATGACAGTGATGAAAAGCCTCTCAAAG
GAAGCCTTCGGTCCCTTAATAGGGATATGCAGCCTACTGAAAGTGCTGACAGCTTAGTCGAATACGGAGAGGGAGACCATGGTCTCTTCA
GTGAAGATGGATCATTTATTGGTGCCTACGCTGGATCTAAGGAGAAGGGATCTGTTGAAAGCAATGGAAGTTCTACAGCAACTTTTCCCC

>In-frame_ADAMTS9_ENST00000498707_chr3_64619374_-_CHL1_ENST00000397491_chr3_447178_+_2255nt
ATGCAGTTTGTATCCTGGGCCACACTGCTAACGCTCCTGGTGCGGGACCTGGCCGAGATGGGGAGCCCAGACGCCGCGGCGGCCGTGCGC
AAGGACAGGCTGCACCCGAGGCAAGTGAAATTATTAGAGACCCTGAGCGAATACGAAATCGTGTCTCCCATCCGAGTGAACGCTCTCGGA
GAACCCTTTCCCACGAACGTCCACTTCAAAAGAACGCGACGGAGCATTAACTCTGCCACTGACCCCTGGCCTGCCTTCGCCTCCTCCTCT
TCCTCCTCTACCTCCTCCCAGGCGCATTACCGCCTCTCTGCCTTCGGCCAGCAGTTTCTATTTAATCTCACCGCCAATGCCGGATTTATC
GCTCCACTGTTCACTGTCACCCTCCTCGGGACGCCCGGGGTGAATCAGACCAAGTTTTATTCCGAAGAGGAAGCGGAACTCAAGCACTGT
TTCTACAAAGGCTATGTCAATACCAACTCCGAGCACACGGCCGTCATCAGCCTCTGCTCAGGAATGCTGGGCACATTCCGGTCTCATGAT
GGGGATTATTTTATTGAACCACTACAGTCTATGGATGAACAAGAAGATGAAGAGGAACAAAACAAACCCCACATCATTTATAGGCGCAGC
GCCCCCCAGAGAGAGCCCTCAACAGGAAGGCATGCATGTGACACCTCAGAACACAAAAATAGGCACAGTAAAGACAAGAAGAAAACCAGA
GCAAGAAAATGGGGAGAAAGGATTAACCTGGCTGGTGACGTAGCAGCATTAAACAGCGGCTTAGCAACAGAGGCATTTTCTGCTTATGGT
AATAAGACGGACAACACAAGAGAAAAGAGGACCCACAGAAGGACAAAACGTTTTTTATCCTATCCACGGTTTGTAGAAGTCTTGGTGGTG
GCAGACAACAGAATGGTTTCATACCATGGAGAAAACCTTCAACACTATATTTTAACTTTAATGTCAATTGTAGCCTCTATCTATAAAGAC
CCAAGTATTGGAAATTTAATTAATATTGTTATTGTGAACTTAATTGTGATTCATAATGAACAGGATGGGCCTTCCATATCTTTTAATGCT
CAGACAACATTAAAAAACTTTTGCCAGTGGCAGCATTCGAAGAACAGTCCAGGTGGAATCCATCATGATACTGCTGTTCTCTTAACAAGA
CAGGATATCTGCAGAGCTCACGACAAATGTGATACCTTAGGCCTGGCTGAACTGGGAACCATTTGTGATCCCTATAGAAGCTGTTCTATT
AGTGAAGATAGTGGATTGAGTACAGCTTTTACGATCGCCCATGAGCTGGGCCATGTGTTTAACATGCCTCATGATGACAACAACAAATGT
AAAGAAGAAGGAGTTAAGAGTCCCCAGCATGTCATGGCTCCAACACTGAACTTCTACACCAACCCCTGGATGTGGTCAAAGTGTAGTCGA
AAATATATCACTGAGTTTTTAGACACTGGTTATGGCGAGTGTTTGCTTAACGAACCTGAATCCAGACCCTACCCTTTGCCTGTCCAACTG
CCAGGCATCCTTTACAACGTGAATAAACAATGTGAATTGATTTTTGGACCAGGTTCTCAGGTGTGCCCATATATGATGCAGTGCAGACGG
CTCTGGTGCAATAACGTCAATGGAGTACACAAAGGCTGCCGGACTCAGCACACACCCTGGGCCGATGGGACGGAGTGCGAGCCTGGAAAG
CACTGCAAGTATGGATTTTGTGTTCCCAAAGAAATGGATGTCCCCGTGACAGATGGATCCTGGGGAAGTTGGAGTCCCTTTGGAACCTGC
TCCAGAACATGTGGAGGGGGCATCAAAACAGCCATTCGAGAGTGCAACAGACCAGAACCAAAAAATGGTGGAAAATACTGTGTAGGACGT
AGAATGAAATTTAAGTCCTGCAACACGGAGCCATGTCTCAAGCAGAAGCGAGACTTCCGAGATGAACAGTGTGCTCACTTTGACGGGAAG
CATTTTAACATCAACGGTCTGCTTCCCAATGTGCGCTGGGTCCCTAAATACAGTGGAATGACAGTGATGAAAAGCCTCTCAAAGGAAGCC
TTCGGTCCCTTAATAGGGATATGCAGCCTACTGAAAGTGCTGACAGCTTAGTCGAATACGGAGAGGGAGACCATGGTCTCTTCAGTGAAG
ATGGATCATTTATTGGTGCCTACGCTGGATCTAAGGAGAAGGGATCTGTTGAAAGCAATGGAAGTTCTACAGCAACTTTTCCCCTTCGGG


* Fusion transcript sequences (Full-length transcript).
>In-frame_ADAMTS9_ENST00000295903_chr3_64619374_-_CHL1_ENST00000397491_chr3_447178_+_3334nt
GGAGGGAGGGGTGGGAAGCACCATGCAGTTTGTATCCTGGGCCACACTGCTAACGCTCCTGGTGCGGGACCTGGCCGAGATGGGGAGCCC
AGACGCCGCGGCGGCCGTGCGCAAGGACAGGCTGCACCCGAGGCAAGTGAAATTATTAGAGACCCTGAGCGAATACGAAATCGTGTCTCC
CATCCGAGTGAACGCTCTCGGAGAACCCTTTCCCACGAACGTCCACTTCAAAAGAACGCGACGGAGCATTAACTCTGCCACTGACCCCTG
GCCTGCCTTCGCCTCCTCCTCTTCCTCCTCTACCTCCTCCCAGGCGCATTACCGCCTCTCTGCCTTCGGCCAGCAGTTTCTATTTAATCT
CACCGCCAATGCCGGATTTATCGCTCCACTGTTCACTGTCACCCTCCTCGGGACGCCCGGGGTGAATCAGACCAAGTTTTATTCCGAAGA
GGAAGCGGAACTCAAGCACTGTTTCTACAAAGGCTATGTCAATACCAACTCCGAGCACACGGCCGTCATCAGCCTCTGCTCAGGAATGCT
GGGCACATTCCGGTCTCATGATGGGGATTATTTTATTGAACCACTACAGTCTATGGATGAACAAGAAGATGAAGAGGAACAAAACAAACC
CCACATCATTTATAGGCGCAGCGCCCCCCAGAGAGAGCCCTCAACAGGAAGGCATGCATGTGACACCTCAGAACACAAAAATAGGCACAG
TAAAGACAAGAAGAAAACCAGAGCAAGAAAATGGGGAGAAAGGATTAACCTGGCTGGTGACGTAGCAGCATTAAACAGCGGCTTAGCAAC
AGAGGCATTTTCTGCTTATGGTAATAAGACGGACAACACAAGAGAAAAGAGGACCCACAGAAGGACAAAACGTTTTTTATCCTATCCACG
GTTTGTAGAAGTCTTGGTGGTGGCAGACAACAGAATGGTTTCATACCATGGAGAAAACCTTCAACACTATATTTTAACTTTAATGTCAAT
TGATGGGCCTTCCATATCTTTTAATGCTCAGACAACATTAAAAAACTTTTGCCAGTGGCAGCATTCGAAGAACAGTCCAGGTGGAATCCA
TCATGATACTGCTGTTCTCTTAACAAGACAGGATATCTGCAGAGCTCACGACAAATGTGATACCTTAGGCCTGGCTGAACTGGGAACCAT
TTGTGATCCCTATAGAAGCTGTTCTATTAGTGAAGATAGTGGATTGAGTACAGCTTTTACGATCGCCCATGAGCTGGGCCATGTGTTTAA
CATGCCTCATGATGACAACAACAAATGTAAAGAAGAAGGAGTTAAGAGTCCCCAGCATGTCATGGCTCCAACACTGAACTTCTACACCAA
CCCCTGGATGTGGTCAAAGTGTAGTCGAAAATATATCACTGAGTTTTTAGACACTGGTTATGGCGAGTGTTTGCTTAACGAACCTGAATC
CAGACCCTACCCTTTGCCTGTCCAACTGCCAGGCATCCTTTACAACGTGAATAAACAATGTGAATTGATTTTTGGACCAGGTTCTCAGGT
GTGCCCATATATGATGCAGTGCAGACGGCTCTGGTGCAATAACGTCAATGGAGTACACAAAGGCTGCCGGACTCAGCACACACCCTGGGC
CGATGGGACGGAGTGCGAGCCTGGAAAGCACTGCAAGTATGGATTTTGTGTTCCCAAAGAAATGGATGTCCCCGTGACAGATGGATCCTG
GGGAAGTTGGAGTCCCTTTGGAACCTGCTCCAGAACATGTGGAGGGGGCATCAAAACAGCCATTCGAGAGTGCAACAGACCAGAACCAAA
AAATGGTGGAAAATACTGTGTAGGACGTAGAATGAAATTTAAGTCCTGCAACACGGAGCCATGTCTCAAGCAGAAGCGAGACTTCCGAGA
TGAACAGTGTGCTCACTTTGACGGGAAGCATTTTAACATCAACGGTCTGCTTCCCAATGTGCGCTGGGTCCCTAAATACAGTGGAATGAC
AGTGATGAAAAGCCTCTCAAAGGAAGCCTTCGGTCCCTTAATAGGGATATGCAGCCTACTGAAAGTGCTGACAGCTTAGTCGAATACGGA
GAGGGAGACCATGGTCTCTTCAGTGAAGATGGATCATTTATTGGTGCCTACGCTGGATCTAAGGAGAAGGGATCTGTTGAAAGCAATGGA
AGTTCTACAGCAACTTTTCCCCTTCGGGCATAAACACAACATATGTAAGCAACGCTACTGGTTCACCCCAACCTTCCATATTTATCTGTT
CAAAGGAGCAAGAACTTTCATATAGGAATAGAAACATGCTGGCCGAAGATTTCATCCAGAAGTCAACATCCTGCAATTATGTTGAAAAGA
GTAGTACTTTCTTCAAAATATAAAATGCCAAGCACTTCAGGCCTATGTTTTGCTTATATTGTTTTCAGGTGCTCAAAATGCAAAACACAA
AACAAATCCTGCATTTAGATACACCTCAACTAAATCCAAAGTCCCCATTCAGTATATTCCATATTTGCCTGATTTTACTATTCGGTGTGT
TTGCATAGATGTTGCTACTTGGTGGGTTTTTCTCCGTATGCACATTGGTATACAGTCTCTGAGAACTGGCTTGGTGACTTTGCTTCACTA
CAGGTTAAAAGACCATAAGCAAACTGGTTATTTAAAATGTAAAAAGGAATATGAAAGTCTTATTAAAACACTTCATTGAAAATATACAGT
CTAAATTTATTATTTAAATTTTACTAGCAAAAGTCTTAGGTGAACAATCAACTAGTATTTGTTGAGCTCCTATTTGCCCAGAGATGGTCA
TATTTAAACAGAAGTATACGTTTTTCAGTTTCAACATGAATTTTTTTATTTCTGTCAGTTATGACATCCACAAGCATCACTTTTTGTGTC
TGTTTTTTTTTTTTTTCTTGGACTAAATTCAACTGCATGGAAGCGGTGGTCAGAAGGTTGTTTTATACGAGAACAGGCAGAAAGTGCCCA
TTGTTCAGGATTCTAATAGCTACATCTACTTAATATCTTCATTTCTAAATTGACTGCTTTTACCTTTTTCTCATGTTTATATAATGGTAT
GCTTGCATATATTTCATGAATACATTGTACATATTATGTTAATATTTACACAATTTAAAATATAGATGTGTTTTATTTTGAAGTGAGAAA
ATGAACATTAACAGGCATGTTTGTACAGCTAGAATATATTAGTAAGATACTGTTTTTCGTCATTCCAGAGCTACAACTAATAACACGAGG
TTCCAAAGCTGAAGACTTTGTATAAAGTATTTGGGTTTTGTTCTTGTATTGCTTTCTTTCAACAGTTTCAAAATAAAATATCATATAAAT

>In-frame_ADAMTS9_ENST00000498707_chr3_64619374_-_CHL1_ENST00000397491_chr3_447178_+_3739nt
ACAGGGCGCCCGGCGCGCCTCGGAGCGCAAGTTCCTCGCCTTCTCCTGCCCGCTCGCTGGGCATTATGCGGCCAAGCAGCCGAGCCCCAG
TCCTCCTCCTCCTCCTGCTCCTCCGGCTCCTCCTGCGGCCCGAGCGGCTCAGCTCTCGGCAGGCGGCGGCGTTGCTCAGCCGAGCGCAGA
CGGGACCCTCGCAGCGAGACCTCAGCGACTCCTAAAGTCAAAAGTTGGCGGCGGGCGCCGGGCTCCGCGCGCTCTCCACGGCCGCTGCCT
CGCGTCGCCGCCGCAGCCAAGGAGGGCAGGAGGGAGGGGGGTGGGGGCAGCGGAGGGAGGGGTGGGAAGCACCATGCAGTTTGTATCCTG
GGCCACACTGCTAACGCTCCTGGTGCGGGACCTGGCCGAGATGGGGAGCCCAGACGCCGCGGCGGCCGTGCGCAAGGACAGGCTGCACCC
GAGGCAAGTGAAATTATTAGAGACCCTGAGCGAATACGAAATCGTGTCTCCCATCCGAGTGAACGCTCTCGGAGAACCCTTTCCCACGAA
CGTCCACTTCAAAAGAACGCGACGGAGCATTAACTCTGCCACTGACCCCTGGCCTGCCTTCGCCTCCTCCTCTTCCTCCTCTACCTCCTC
CCAGGCGCATTACCGCCTCTCTGCCTTCGGCCAGCAGTTTCTATTTAATCTCACCGCCAATGCCGGATTTATCGCTCCACTGTTCACTGT
CACCCTCCTCGGGACGCCCGGGGTGAATCAGACCAAGTTTTATTCCGAAGAGGAAGCGGAACTCAAGCACTGTTTCTACAAAGGCTATGT
CAATACCAACTCCGAGCACACGGCCGTCATCAGCCTCTGCTCAGGAATGCTGGGCACATTCCGGTCTCATGATGGGGATTATTTTATTGA
ACCACTACAGTCTATGGATGAACAAGAAGATGAAGAGGAACAAAACAAACCCCACATCATTTATAGGCGCAGCGCCCCCCAGAGAGAGCC
CTCAACAGGAAGGCATGCATGTGACACCTCAGAACACAAAAATAGGCACAGTAAAGACAAGAAGAAAACCAGAGCAAGAAAATGGGGAGA
AAGGATTAACCTGGCTGGTGACGTAGCAGCATTAAACAGCGGCTTAGCAACAGAGGCATTTTCTGCTTATGGTAATAAGACGGACAACAC
AAGAGAAAAGAGGACCCACAGAAGGACAAAACGTTTTTTATCCTATCCACGGTTTGTAGAAGTCTTGGTGGTGGCAGACAACAGAATGGT
TTCATACCATGGAGAAAACCTTCAACACTATATTTTAACTTTAATGTCAATTGTAGCCTCTATCTATAAAGACCCAAGTATTGGAAATTT
AATTAATATTGTTATTGTGAACTTAATTGTGATTCATAATGAACAGGATGGGCCTTCCATATCTTTTAATGCTCAGACAACATTAAAAAA
CTTTTGCCAGTGGCAGCATTCGAAGAACAGTCCAGGTGGAATCCATCATGATACTGCTGTTCTCTTAACAAGACAGGATATCTGCAGAGC
TCACGACAAATGTGATACCTTAGGCCTGGCTGAACTGGGAACCATTTGTGATCCCTATAGAAGCTGTTCTATTAGTGAAGATAGTGGATT
GAGTACAGCTTTTACGATCGCCCATGAGCTGGGCCATGTGTTTAACATGCCTCATGATGACAACAACAAATGTAAAGAAGAAGGAGTTAA
GAGTCCCCAGCATGTCATGGCTCCAACACTGAACTTCTACACCAACCCCTGGATGTGGTCAAAGTGTAGTCGAAAATATATCACTGAGTT
TTTAGACACTGGTTATGGCGAGTGTTTGCTTAACGAACCTGAATCCAGACCCTACCCTTTGCCTGTCCAACTGCCAGGCATCCTTTACAA
CGTGAATAAACAATGTGAATTGATTTTTGGACCAGGTTCTCAGGTGTGCCCATATATGATGCAGTGCAGACGGCTCTGGTGCAATAACGT
CAATGGAGTACACAAAGGCTGCCGGACTCAGCACACACCCTGGGCCGATGGGACGGAGTGCGAGCCTGGAAAGCACTGCAAGTATGGATT
TTGTGTTCCCAAAGAAATGGATGTCCCCGTGACAGATGGATCCTGGGGAAGTTGGAGTCCCTTTGGAACCTGCTCCAGAACATGTGGAGG
GGGCATCAAAACAGCCATTCGAGAGTGCAACAGACCAGAACCAAAAAATGGTGGAAAATACTGTGTAGGACGTAGAATGAAATTTAAGTC
CTGCAACACGGAGCCATGTCTCAAGCAGAAGCGAGACTTCCGAGATGAACAGTGTGCTCACTTTGACGGGAAGCATTTTAACATCAACGG
TCTGCTTCCCAATGTGCGCTGGGTCCCTAAATACAGTGGAATGACAGTGATGAAAAGCCTCTCAAAGGAAGCCTTCGGTCCCTTAATAGG
GATATGCAGCCTACTGAAAGTGCTGACAGCTTAGTCGAATACGGAGAGGGAGACCATGGTCTCTTCAGTGAAGATGGATCATTTATTGGT
GCCTACGCTGGATCTAAGGAGAAGGGATCTGTTGAAAGCAATGGAAGTTCTACAGCAACTTTTCCCCTTCGGGCATAAACACAACATATG
TAAGCAACGCTACTGGTTCACCCCAACCTTCCATATTTATCTGTTCAAAGGAGCAAGAACTTTCATATAGGAATAGAAACATGCTGGCCG
AAGATTTCATCCAGAAGTCAACATCCTGCAATTATGTTGAAAAGAGTAGTACTTTCTTCAAAATATAAAATGCCAAGCACTTCAGGCCTA
TGTTTTGCTTATATTGTTTTCAGGTGCTCAAAATGCAAAACACAAAACAAATCCTGCATTTAGATACACCTCAACTAAATCCAAAGTCCC
CATTCAGTATATTCCATATTTGCCTGATTTTACTATTCGGTGTGTTTGCATAGATGTTGCTACTTGGTGGGTTTTTCTCCGTATGCACAT
TGGTATACAGTCTCTGAGAACTGGCTTGGTGACTTTGCTTCACTACAGGTTAAAAGACCATAAGCAAACTGGTTATTTAAAATGTAAAAA
GGAATATGAAAGTCTTATTAAAACACTTCATTGAAAATATACAGTCTAAATTTATTATTTAAATTTTACTAGCAAAAGTCTTAGGTGAAC
AATCAACTAGTATTTGTTGAGCTCCTATTTGCCCAGAGATGGTCATATTTAAACAGAAGTATACGTTTTTCAGTTTCAACATGAATTTTT
TTATTTCTGTCAGTTATGACATCCACAAGCATCACTTTTTGTGTCTGTTTTTTTTTTTTTTCTTGGACTAAATTCAACTGCATGGAAGCG
GTGGTCAGAAGGTTGTTTTATACGAGAACAGGCAGAAAGTGCCCATTGTTCAGGATTCTAATAGCTACATCTACTTAATATCTTCATTTC
TAAATTGACTGCTTTTACCTTTTTCTCATGTTTATATAATGGTATGCTTGCATATATTTCATGAATACATTGTACATATTATGTTAATAT
TTACACAATTTAAAATATAGATGTGTTTTATTTTGAAGTGAGAAAATGAACATTAACAGGCATGTTTGTACAGCTAGAATATATTAGTAA
GATACTGTTTTTCGTCATTCCAGAGCTACAACTAATAACACGAGGTTCCAAAGCTGAAGACTTTGTATAAAGTATTTGGGTTTTGTTCTT


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FusionGenePPI for ADAMTS9_CHL1


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
ADAMTS9CHL1ANK1, ANK3, ANK2, LGALS1


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for ADAMTS9_CHL1


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for ADAMTS9_CHL1


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneADAMTS9C0011860Diabetes Mellitus, Non-Insulin-Dependent2CTD_human
TgeneCHL1C0036341Schizophrenia2CTD_human
TgeneCHL1C0015923Fetal Alcohol Syndrome1PSYGENET
TgeneCHL1C2985290Fetal Alcohol Spectrum Disorders1PSYGENET
TgeneCHL1C3714756Intellectual Disability1CTD_human