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Fusion gene ID: 7448 |
FusionGeneSummary for CLNS1A_AQP11 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: CLNS1A_AQP11 | Fusion gene ID: 7448 | Hgene | Tgene | Gene symbol | CLNS1A | AQP11 | Gene ID | 1207 | 282679 |
| Gene name | chloride nucleotide-sensitive channel 1A | aquaporin 11 | |
| Synonyms | CLCI|CLNS1B|ICln | AQPX1 | |
| Cytomap | 11q14.1 | 11q14.1 | |
| Type of gene | protein-coding | protein-coding | |
| Description | methylosome subunit pIClnchloride channel regulatory proteinchloride channel, nucleotide sensitive 1Achloride conductance regulatory protein IClnchloride ion current inducer proteini(Cln)reticulocyte pIClnreticulocyte protein ICln | aquaporin-11AQP-11 | |
| Modification date | 20180522 | 20180523 | |
| UniProtAcc | P54105 | Q8NBQ7 | |
| Ensembl transtripts involved in fusion gene | ENST00000525428, ENST00000263309, ENST00000525064, ENST00000532069, ENST00000528364, ENST00000533957, | ENST00000528638, ENST00000313578, | |
| Fusion gene scores | * DoF score | 5 X 3 X 3=45 | 3 X 2 X 2=12 |
| # samples | 6 | 3 | |
| ** MAII score | log2(6/45*10)=0.415037499278844 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(3/12*10)=1.32192809488736 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
| Context | PubMed: CLNS1A [Title/Abstract] AND AQP11 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | CLNS1A | GO:0000387 | spliceosomal snRNP assembly | 18984161 |
| Tgene | AQP11 | GO:0006811 | ion transport | 16650285 |
| Tgene | AQP11 | GO:0006833 | water transport | 16650285 |
| Tgene | AQP11 | GO:0015793 | glycerol transport | 16650285 |
| Tgene | AQP11 | GO:0015840 | urea transport | 16650285 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | RV | BRCA | TCGA-D8-A27G-01A | CLNS1A | chr11 | 77336008 | - | AQP11 | chr11 | 77314601 | + |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| 5CDS-3UTR | ENST00000525428 | ENST00000528638 | CLNS1A | chr11 | 77336008 | - | AQP11 | chr11 | 77314601 | + |
| 5CDS-3UTR | ENST00000525428 | ENST00000313578 | CLNS1A | chr11 | 77336008 | - | AQP11 | chr11 | 77314601 | + |
| 5CDS-3UTR | ENST00000263309 | ENST00000528638 | CLNS1A | chr11 | 77336008 | - | AQP11 | chr11 | 77314601 | + |
| 5CDS-3UTR | ENST00000263309 | ENST00000313578 | CLNS1A | chr11 | 77336008 | - | AQP11 | chr11 | 77314601 | + |
| 5CDS-3UTR | ENST00000525064 | ENST00000528638 | CLNS1A | chr11 | 77336008 | - | AQP11 | chr11 | 77314601 | + |
| 5CDS-3UTR | ENST00000525064 | ENST00000313578 | CLNS1A | chr11 | 77336008 | - | AQP11 | chr11 | 77314601 | + |
| intron-3UTR | ENST00000532069 | ENST00000528638 | CLNS1A | chr11 | 77336008 | - | AQP11 | chr11 | 77314601 | + |
| intron-3UTR | ENST00000532069 | ENST00000313578 | CLNS1A | chr11 | 77336008 | - | AQP11 | chr11 | 77314601 | + |
| 5CDS-3UTR | ENST00000528364 | ENST00000528638 | CLNS1A | chr11 | 77336008 | - | AQP11 | chr11 | 77314601 | + |
| 5CDS-3UTR | ENST00000528364 | ENST00000313578 | CLNS1A | chr11 | 77336008 | - | AQP11 | chr11 | 77314601 | + |
| intron-3UTR | ENST00000533957 | ENST00000528638 | CLNS1A | chr11 | 77336008 | - | AQP11 | chr11 | 77314601 | + |
| intron-3UTR | ENST00000533957 | ENST00000313578 | CLNS1A | chr11 | 77336008 | - | AQP11 | chr11 | 77314601 | + |
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FusionProtFeatures for CLNS1A_AQP11 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| CLNS1A | AQP11 |
| Involved in both the assembly of spliceosomal snRNPs andthe methylation of Sm proteins (PubMed:21081503, PubMed:18984161).Chaperone that regulates the assembly of spliceosomal U1, U2, U4and U5 small nuclear ribonucleoproteins (snRNPs), the buildingblocks of the spliceosome. Thereby, plays an important role in thesplicing of cellular pre-mRNAs. Most spliceosomal snRNPs contain acommon set of Sm proteins SNRPB, SNRPD1, SNRPD2, SNRPD3, SNRPE,SNRPF and SNRPG that assemble in a heptameric protein ring on theSm site of the small nuclear RNA to form the core snRNP. In thecytosol, the Sm proteins SNRPD1, SNRPD2, SNRPE, SNRPF and SNRPGare trapped in an inactive 6S pICln-Sm complex by the chaperoneCLNS1A that controls the assembly of the core snRNP. Dissociationby the SMN complex of CLNS1A from the trapped Sm proteins andtheir transfer to an SMN-Sm complex triggers the assembly of coresnRNPs and their transport to the nucleus. May also indirectlyparticipate in cellular volume control by activation of aswelling-induced chloride conductance pathway.{ECO:0000269|PubMed:10330151, ECO:0000269|PubMed:11713266,ECO:0000269|PubMed:18984161, ECO:0000269|PubMed:21081503}. | Aquaporins facilitate the transport of water and smallneutral solutes across cell membranes. {ECO:0000250}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for CLNS1A_AQP11 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for CLNS1A_AQP11 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| CLNS1A | PRMT5, ITGA2B, SNRPD3, SNRPD1, SNRPB, SNRPD2, SNRPE, WDR77, G3BP1, LSM10, LSM11, AGO3, WDR45, SNRPF, SNRPG, ARRB2, PPP4R2, LGALS1, LGALS3, PTMS, RHOA, OSTF1, PGAM1, SEC24A, PPA1, PDLIM1, UFC1, ATIC, UBXN1, PUM1, NEDD8, TPD52L2, PIR, LPP, RAC1, PLIN3, NDRG1, MIF, SEC24C, PPP2CA, S100A6, UBA2, PDIA6, VBP1, TRIP6, PLS3, MDH2, SNX12, PSMA5, UBA52, UBQLN1, RAD23A, RPS21, MAGOH, EIF4A3, SMURF1, YWHAE, FN1, LSM2, LSM3, LSM6, CSNK2A1, NOS2, UBL4A, PAN2, FBXO6, PDCD10, TRNT1, CTPS1, HSPA5, P4HB, PFDN2, USP5, NFE4, EPB41, GAR1, DDAH2, RPS2, RBFOX2, FBLN7, ADCYAP1, EPB41L3, RPS6KB2, NTRK1, TMEM17, ALKBH3, CRBN, PTPRG, SNRPN, FARP2, RPL15, EPB41L2, CYLD, TRIM25 | AQP11 | STAT5A |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for CLNS1A_AQP11 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for CLNS1A_AQP11 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Hgene | CLNS1A | C0025202 | melanoma | 1 | CTD_human |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
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