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Fusion gene ID: 7205 |
FusionGeneSummary for CHSY3_DDX46 |
Fusion gene summary |
Fusion gene information | Fusion gene name: CHSY3_DDX46 | Fusion gene ID: 7205 | Hgene | Tgene | Gene symbol | CHSY3 | DDX46 | Gene ID | 337876 | 9879 |
Gene name | chondroitin sulfate synthase 3 | DEAD-box helicase 46 | |
Synonyms | CHSY2|CSS3 | PRPF5|Prp5 | |
Cytomap | 5q23.3 | 5q31.1 | |
Type of gene | protein-coding | protein-coding | |
Description | chondroitin sulfate synthase 3N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase 3N-acetylgalactosaminyltransferase 3carbohydrate synthase 2chSy-2chondroitin glucuronyltransferase 3chondroitin synthase-2glucuronosyl-N-acetylgalactos | probable ATP-dependent RNA helicase DDX46DEAD (Asp-Glu-Ala-Asp) box polypeptide 46DEAD box protein 46PRP5 homologPrp5-like DEAD-box proteinRNA helicase | |
Modification date | 20180519 | 20180519 | |
UniProtAcc | Q70JA7 | Q7L014 | |
Ensembl transtripts involved in fusion gene | ENST00000305031, ENST00000507545, | ENST00000452510, ENST00000354283, ENST00000509178, | |
Fusion gene scores | * DoF score | 3 X 1 X 3=9 | 5 X 6 X 3=90 |
# samples | 3 | 6 | |
** MAII score | log2(3/9*10)=1.73696559416621 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(6/90*10)=-0.584962500721156 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: CHSY3 [Title/Abstract] AND DDX46 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | LGG | TCGA-P5-A72W-01A | CHSY3 | chr5 | 129244053 | + | DDX46 | chr5 | 134130540 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000305031 | ENST00000452510 | CHSY3 | chr5 | 129244053 | + | DDX46 | chr5 | 134130540 | + |
In-frame | ENST00000305031 | ENST00000354283 | CHSY3 | chr5 | 129244053 | + | DDX46 | chr5 | 134130540 | + |
5CDS-3UTR | ENST00000305031 | ENST00000509178 | CHSY3 | chr5 | 129244053 | + | DDX46 | chr5 | 134130540 | + |
3UTR-3CDS | ENST00000507545 | ENST00000452510 | CHSY3 | chr5 | 129244053 | + | DDX46 | chr5 | 134130540 | + |
3UTR-3CDS | ENST00000507545 | ENST00000354283 | CHSY3 | chr5 | 129244053 | + | DDX46 | chr5 | 134130540 | + |
3UTR-3UTR | ENST00000507545 | ENST00000509178 | CHSY3 | chr5 | 129244053 | + | DDX46 | chr5 | 134130540 | + |
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FusionProtFeatures for CHSY3_DDX46 |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
CHSY3 | DDX46 |
Has both beta-1,3-glucuronic acid and beta-1,4-N-acetylgalactosamine transferase activity. Transfers glucuronicacid (GlcUA) from UDP-GlcUA and N-acetylgalactosamine (GalNAc)from UDP-GalNAc to the non-reducing end of the elongatingchondroitin polymer. Specific activity is much reduced compared toCHSY1. {ECO:0000269|PubMed:12907687}. | Plays an essential role in splicing, either prior to, orduring splicing A complex formation.{ECO:0000269|PubMed:12234937}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | CHSY3 | chr5:129244053 | chr5:134130540 | ENST00000305031 | + | 2 | 3 | 211_235 | 362 | 883 | Compositional bias | Note=Pro-rich |
Hgene | CHSY3 | chr5:129244053 | chr5:134130540 | ENST00000305031 | + | 2 | 3 | 1_7 | 362 | 883 | Topological domain | Cytoplasmic |
Hgene | CHSY3 | chr5:129244053 | chr5:134130540 | ENST00000305031 | + | 2 | 3 | 8_28 | 362 | 883 | Transmembrane | Helical%3B Signal-anchor for type II membrane protein |
Tgene | >DDX46 | chr5:129244053 | chr5:134130540 | ENST00000354283 | + | 12 | 23 | 592_753 | 542 | 1032 | Domain | Helicase C-terminal |
Tgene | >DDX46 | chr5:129244053 | chr5:134130540 | ENST00000452510 | + | 12 | 23 | 592_753 | 542 | 1033 | Domain | Helicase C-terminal |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | >CHSY3 | chr5:129244053 | chr5:134130540 | ENST00000305031 | + | 2 | 3 | 539_544 | 362 | 883 | Compositional bias | Note=Poly-Leu |
Hgene | >CHSY3 | chr5:129244053 | chr5:134130540 | ENST00000305031 | + | 2 | 3 | 29_882 | 362 | 883 | Topological domain | Lumenal |
Tgene | DDX46 | chr5:129244053 | chr5:134130540 | ENST00000354283 | + | 12 | 23 | 152_197 | 542 | 1032 | Coiled coil | Ontology_term=ECO:0000255 |
Tgene | DDX46 | chr5:129244053 | chr5:134130540 | ENST00000452510 | + | 12 | 23 | 152_197 | 542 | 1033 | Coiled coil | Ontology_term=ECO:0000255 |
Tgene | DDX46 | chr5:129244053 | chr5:134130540 | ENST00000354283 | + | 12 | 23 | 202_209 | 542 | 1032 | Compositional bias | Note=Poly-Asp |
Tgene | DDX46 | chr5:129244053 | chr5:134130540 | ENST00000354283 | + | 12 | 23 | 3_103 | 542 | 1032 | Compositional bias | Note=Arg-rich |
Tgene | DDX46 | chr5:129244053 | chr5:134130540 | ENST00000452510 | + | 12 | 23 | 202_209 | 542 | 1033 | Compositional bias | Note=Poly-Asp |
Tgene | DDX46 | chr5:129244053 | chr5:134130540 | ENST00000452510 | + | 12 | 23 | 3_103 | 542 | 1033 | Compositional bias | Note=Arg-rich |
Tgene | DDX46 | chr5:129244053 | chr5:134130540 | ENST00000354283 | + | 12 | 23 | 403_581 | 542 | 1032 | Domain | Helicase ATP-binding |
Tgene | DDX46 | chr5:129244053 | chr5:134130540 | ENST00000452510 | + | 12 | 23 | 403_581 | 542 | 1033 | Domain | Helicase ATP-binding |
Tgene | DDX46 | chr5:129244053 | chr5:134130540 | ENST00000354283 | + | 12 | 23 | 372_400 | 542 | 1032 | Motif | Note=Q motif |
Tgene | DDX46 | chr5:129244053 | chr5:134130540 | ENST00000354283 | + | 12 | 23 | 529_532 | 542 | 1032 | Motif | Note=DEAD box |
Tgene | DDX46 | chr5:129244053 | chr5:134130540 | ENST00000452510 | + | 12 | 23 | 372_400 | 542 | 1033 | Motif | Note=Q motif |
Tgene | DDX46 | chr5:129244053 | chr5:134130540 | ENST00000452510 | + | 12 | 23 | 529_532 | 542 | 1033 | Motif | Note=DEAD box |
Tgene | DDX46 | chr5:129244053 | chr5:134130540 | ENST00000354283 | + | 12 | 23 | 416_423 | 542 | 1032 | Nucleotide binding | ATP |
Tgene | DDX46 | chr5:129244053 | chr5:134130540 | ENST00000452510 | + | 12 | 23 | 416_423 | 542 | 1033 | Nucleotide binding | ATP |
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FusionGeneSequence for CHSY3_DDX46 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_CHSY3_ENST00000305031_chr5_129244053_+_DDX46_ENST00000452510_chr5_134130540_+_853aa MAVRSRRPWMSVALGLVLGFTAASWLIAPRVAELSERKRRGSSLCSYYGRSAAGPRAGAQQPLPQPQSRPRQEQSPPPARQDLQGPPLPE AAPGITSFRSSPWQQPPPLQQRRRGREPEGATGLPGAPAAEGEPEEEDGGAAGQRRDGRPGSSHNGSGDGGAAAPSARPRDFLYVGVMTA QKYLGSRALAAQRTWARFIPGRVEFFSSQQPPNAGQPPPPLPVIALPGVDDSYPPQKKSFMMIKYMHDHYLDKYEWFMRADDDVYIKGDK LEEFLRSLNSSKPLYLGQTGLGNIEELGKLGLEPGENFCMGGPGMIFSREVLRRMVPHIGECLREMYTTHEDVEVGRCVRRFGGTQCVWS YEVMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVIIFVDKQE HADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAY TFITEDQARYAGDIIKALELSGTAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFDETEQALANERKKLQKAALGLQDSDDEDAA VDIDEQIESMFNSKKRVKDMAAPGTSSVPAPTAGNAEKLEIAKRLALRINAQKNLGIESQVDVMQQATNAILRGGTILAPTVSAKTIAEQ LAEKINAKLNYVPLEKQEEERQDGGQNESFKRYEEELEINDFPQTARWKVTSKEALQRISEYSEAAITIRGTYFPPGKEPKEGERKIYLA >In-frame_CHSY3_ENST00000305031_chr5_129244053_+_DDX46_ENST00000354283_chr5_134130540_+_852aa MAVRSRRPWMSVALGLVLGFTAASWLIAPRVAELSERKRRGSSLCSYYGRSAAGPRAGAQQPLPQPQSRPRQEQSPPPARQDLQGPPLPE AAPGITSFRSSPWQQPPPLQQRRRGREPEGATGLPGAPAAEGEPEEEDGGAAGQRRDGRPGSSHNGSGDGGAAAPSARPRDFLYVGVMTA QKYLGSRALAAQRTWARFIPGRVEFFSSQQPPNAGQPPPPLPVIALPGVDDSYPPQKKSFMMIKYMHDHYLDKYEWFMRADDDVYIKGDK LEEFLRSLNSSKPLYLGQTGLGNIEELGKLGLEPGENFCMGGPGMIFSREVLRRMVPHIGECLREMYTTHEDVEVGRCVRRFGGTQCVWS YEVMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVIIFVDKQE HADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAY TFITEDQARYAGDIIKALELSGTAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFDETEQALANERKKLQKAALGLQDSDDEDAA VDIDEQIESMFNSKKRVKDMAAPGTSSVPAPTAGNAEKLEIAKRLALRINAQKNLGIESQDVMQQATNAILRGGTILAPTVSAKTIAEQL AEKINAKLNYVPLEKQEEERQDGGQNESFKRYEEELEINDFPQTARWKVTSKEALQRISEYSEAAITIRGTYFPPGKEPKEGERKIYLAI |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_CHSY3_ENST00000305031_chr5_129244053_+_DDX46_ENST00000452510_chr5_134130540_+_2559nt ATGGCTGTGCGCTCTCGCCGCCCGTGGATGAGCGTGGCATTAGGGCTGGTGCTGGGCTTCACCGCCGCGTCCTGGCTCATCGCCCCCAGG GTGGCGGAGCTGAGCGAGAGGAAGAGACGTGGCTCCAGCCTCTGCTCCTACTACGGTCGCTCTGCTGCTGGCCCCCGCGCCGGCGCTCAG CAGCCGCTCCCCCAGCCCCAGTCCCGACCACGGCAGGAGCAGTCGCCGCCCCCCGCGCGCCAGGATCTCCAGGGGCCACCGCTGCCCGAG GCAGCACCCGGGATCACCAGTTTTCGAAGCAGCCCCTGGCAGCAGCCACCTCCGCTGCAGCAGCGGCGGCGAGGACGCGAGCCTGAGGGC GCGACGGGGCTTCCCGGTGCTCCAGCGGCCGAGGGGGAGCCCGAGGAGGAGGACGGGGGCGCGGCTGGGCAGCGGAGAGACGGCCGGCCG GGGAGTAGCCACAACGGCAGCGGGGACGGGGGCGCTGCCGCCCCGAGCGCCCGACCCCGGGACTTCCTGTACGTGGGGGTGATGACCGCG CAGAAGTACCTGGGCAGCCGCGCGCTGGCCGCGCAGCGGACCTGGGCGCGTTTCATCCCGGGCCGCGTGGAGTTCTTTTCCAGCCAGCAG CCCCCCAACGCCGGCCAGCCCCCGCCACCCCTGCCTGTCATCGCGCTACCGGGTGTGGACGACTCCTATCCTCCCCAGAAAAAGTCCTTC ATGATGATCAAGTACATGCACGACCACTACCTGGACAAGTATGAGTGGTTCATGCGCGCCGACGACGATGTCTACATCAAAGGTGATAAA TTAGAAGAGTTTCTTAGATCGCTAAACAGCAGTAAGCCTCTCTACCTGGGACAGACTGGCCTGGGGAATATTGAAGAGCTTGGAAAGCTG GGACTGGAGCCTGGGGAAAACTTCTGTATGGGAGGACCTGGCATGATCTTTAGCCGAGAAGTTCTCAGGAGGATGGTGCCACATATTGGT GAATGCCTTAGAGAAATGTACACGACTCATGAGGATGTGGAAGTAGGAAGATGCGTTCGCCGTTTTGGTGGGACTCAGTGTGTCTGGTCT TACGAGGTCATGCGCATCGTGGATAATGTTCGTCCTGATCGACAGACGGTTATGTTTTCAGCTACTTTCCCCAGAGCTATGGAGGCTTTG GCTCGCAGGATCCTCAGTAAACCTATTGAAGTACAAGTTGGAGGCAGGAGTGTGGTTTGCTCAGATGTGGAGCAACAAGTGATTGTGATT GAAGAAGAAAAGAAATTCTTGAAGTTACTTGAGCTTCTAGGCCATTATCAAGAGTCAGGATCTGTCATTATATTTGTGGATAAGCAGGAA CATGCTGATGGTCTTCTTAAGGATTTAATGAGAGCATCTTATCCTTGCATGTCTCTTCATGGAGGCATTGATCAATATGACAGAGATAGC ATCATAAATGACTTTAAGAATGGGACCTGCAAACTTCTTGTGGCTACCTCTGTTGCTGCCCGAGGTCTAGATGTGAAACATCTGATTCTT GTAGTAAATTATAGCTGCCCCAACCATTATGAGGATTATGTACACAGAGCAGGGCGGACTGGAAGAGCAGGAAACAAGGGTTATGCTTAT ACTTTTATCACAGAGGATCAAGCTCGCTATGCTGGTGACATAATTAAAGCTCTTGAATTGTCAGGGACTGCAGTACCTCCTGATTTAGAG AAACTGTGGAGTGATTTCAAAGATCAGCAGAAAGCTGAGGGGAAAATAATTAAAAAGAGTAGTGGGTTCTCTGGTAAGGGATTCAAGTTT GATGAAACAGAACAAGCTTTGGCTAATGAGAGGAAGAAGTTACAAAAAGCAGCTCTTGGTCTACAAGATTCAGATGATGAGGATGCTGCA GTTGATATTGATGAGCAAATTGAAAGCATGTTTAATTCAAAGAAGAGAGTAAAGGATATGGCTGCTCCTGGAACATCAAGTGTTCCTGCT CCAACTGCAGGAAATGCTGAGAAATTAGAAATTGCTAAGAGATTGGCTCTTAGAATCAATGCCCAGAAGAATTTGGGCATCGAGTCTCAG GTAGATGTGATGCAGCAGGCCACCAATGCAATTCTTAGGGGTGGCACCATTCTGGCTCCCACTGTTTCTGCAAAAACCATTGCAGAACAA CTTGCTGAAAAGATCAATGCCAAGCTCAATTATGTGCCGTTAGAGAAACAAGAAGAAGAGAGACAGGATGGTGGACAGAATGAATCTTTT AAGAGATATGAAGAAGAATTAGAGATCAATGACTTCCCACAGACTGCTAGGTGGAAAGTTACCTCTAAGGAAGCTCTGCAGAGAATCAGT GAATACTCTGAAGCCGCAATTACAATCAGAGGAACCTACTTCCCTCCTGGCAAAGAACCCAAGGAAGGCGAGCGGAAGATTTACTTGGCA ATTGAAAGTGCCAATGAACTGGCTGTGCAGAAAGCAAAGGCAGAAATCACCAGGCTCATAAAAGAAGAGCTGATCCGGCTGCAAAATTCA >In-frame_CHSY3_ENST00000305031_chr5_129244053_+_DDX46_ENST00000354283_chr5_134130540_+_2556nt ATGGCTGTGCGCTCTCGCCGCCCGTGGATGAGCGTGGCATTAGGGCTGGTGCTGGGCTTCACCGCCGCGTCCTGGCTCATCGCCCCCAGG GTGGCGGAGCTGAGCGAGAGGAAGAGACGTGGCTCCAGCCTCTGCTCCTACTACGGTCGCTCTGCTGCTGGCCCCCGCGCCGGCGCTCAG CAGCCGCTCCCCCAGCCCCAGTCCCGACCACGGCAGGAGCAGTCGCCGCCCCCCGCGCGCCAGGATCTCCAGGGGCCACCGCTGCCCGAG GCAGCACCCGGGATCACCAGTTTTCGAAGCAGCCCCTGGCAGCAGCCACCTCCGCTGCAGCAGCGGCGGCGAGGACGCGAGCCTGAGGGC GCGACGGGGCTTCCCGGTGCTCCAGCGGCCGAGGGGGAGCCCGAGGAGGAGGACGGGGGCGCGGCTGGGCAGCGGAGAGACGGCCGGCCG GGGAGTAGCCACAACGGCAGCGGGGACGGGGGCGCTGCCGCCCCGAGCGCCCGACCCCGGGACTTCCTGTACGTGGGGGTGATGACCGCG CAGAAGTACCTGGGCAGCCGCGCGCTGGCCGCGCAGCGGACCTGGGCGCGTTTCATCCCGGGCCGCGTGGAGTTCTTTTCCAGCCAGCAG CCCCCCAACGCCGGCCAGCCCCCGCCACCCCTGCCTGTCATCGCGCTACCGGGTGTGGACGACTCCTATCCTCCCCAGAAAAAGTCCTTC ATGATGATCAAGTACATGCACGACCACTACCTGGACAAGTATGAGTGGTTCATGCGCGCCGACGACGATGTCTACATCAAAGGTGATAAA TTAGAAGAGTTTCTTAGATCGCTAAACAGCAGTAAGCCTCTCTACCTGGGACAGACTGGCCTGGGGAATATTGAAGAGCTTGGAAAGCTG GGACTGGAGCCTGGGGAAAACTTCTGTATGGGAGGACCTGGCATGATCTTTAGCCGAGAAGTTCTCAGGAGGATGGTGCCACATATTGGT GAATGCCTTAGAGAAATGTACACGACTCATGAGGATGTGGAAGTAGGAAGATGCGTTCGCCGTTTTGGTGGGACTCAGTGTGTCTGGTCT TACGAGGTCATGCGCATCGTGGATAATGTTCGTCCTGATCGACAGACGGTTATGTTTTCAGCTACTTTCCCCAGAGCTATGGAGGCTTTG GCTCGCAGGATCCTCAGTAAACCTATTGAAGTACAAGTTGGAGGCAGGAGTGTGGTTTGCTCAGATGTGGAGCAACAAGTGATTGTGATT GAAGAAGAAAAGAAATTCTTGAAGTTACTTGAGCTTCTAGGCCATTATCAAGAGTCAGGATCTGTCATTATATTTGTGGATAAGCAGGAA CATGCTGATGGTCTTCTTAAGGATTTAATGAGAGCATCTTATCCTTGCATGTCTCTTCATGGAGGCATTGATCAATATGACAGAGATAGC ATCATAAATGACTTTAAGAATGGGACCTGCAAACTTCTTGTGGCTACCTCTGTTGCTGCCCGAGGTCTAGATGTGAAACATCTGATTCTT GTAGTAAATTATAGCTGCCCCAACCATTATGAGGATTATGTACACAGAGCAGGGCGGACTGGAAGAGCAGGAAACAAGGGTTATGCTTAT ACTTTTATCACAGAGGATCAAGCTCGCTATGCTGGTGACATAATTAAAGCTCTTGAATTGTCAGGGACTGCAGTACCTCCTGATTTAGAG AAACTGTGGAGTGATTTCAAAGATCAGCAGAAAGCTGAGGGGAAAATAATTAAAAAGAGTAGTGGGTTCTCTGGTAAGGGATTCAAGTTT GATGAAACAGAACAAGCTTTGGCTAATGAGAGGAAGAAGTTACAAAAAGCAGCTCTTGGTCTACAAGATTCAGATGATGAGGATGCTGCA GTTGATATTGATGAGCAAATTGAAAGCATGTTTAATTCAAAGAAGAGAGTAAAGGATATGGCTGCTCCTGGAACATCAAGTGTTCCTGCT CCAACTGCAGGAAATGCTGAGAAATTAGAAATTGCTAAGAGATTGGCTCTTAGAATCAATGCCCAGAAGAATTTGGGCATCGAGTCTCAG GATGTGATGCAGCAGGCCACCAATGCAATTCTTAGGGGTGGCACCATTCTGGCTCCCACTGTTTCTGCAAAAACCATTGCAGAACAACTT GCTGAAAAGATCAATGCCAAGCTCAATTATGTGCCGTTAGAGAAACAAGAAGAAGAGAGACAGGATGGTGGACAGAATGAATCTTTTAAG AGATATGAAGAAGAATTAGAGATCAATGACTTCCCACAGACTGCTAGGTGGAAAGTTACCTCTAAGGAAGCTCTGCAGAGAATCAGTGAA TACTCTGAAGCCGCAATTACAATCAGAGGAACCTACTTCCCTCCTGGCAAAGAACCCAAGGAAGGCGAGCGGAAGATTTACTTGGCAATT GAAAGTGCCAATGAACTGGCTGTGCAGAAAGCAAAGGCAGAAATCACCAGGCTCATAAAAGAAGAGCTGATCCGGCTGCAAAATTCATAC |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_CHSY3_ENST00000305031_chr5_129244053_+_DDX46_ENST00000452510_chr5_134130540_+_5349nt GGGTGGCAGCCTAGGAGCGGACGCGTTGCCGCCGCCGCTGCTCCTCCTCCTCCTCCTGCAGCTCCTCCAGCTGCCGCTGCTGCCGCCGCT GCCGCCACCGCCGCCGCCGGGAGAAGTTTCACTCCCGACCCTTGCTCGGAGCCCCGGCCCAGAGCTGAGCGGGAGCCCGGCAGGCAGCTG CAGCCCGCGGCAGTCGAGGCGTCCGCGGCGCTTCGACCTCCAGCCGGTGTCGGCGCCTAGGCGGCCGGCTGCGGCCGCGGCTGGGGGCGC AAAGGCGGAGGAGGGGCGGGTGTGAGCCGGGGAAACCGCGTGCCGCGCCGCGACAGCCCAGCGAGCGTCCGCGCCCGGGACAGCCGCGAT GGCTGTGCGCTCTCGCCGCCCGTGGATGAGCGTGGCATTAGGGCTGGTGCTGGGCTTCACCGCCGCGTCCTGGCTCATCGCCCCCAGGGT GGCGGAGCTGAGCGAGAGGAAGAGACGTGGCTCCAGCCTCTGCTCCTACTACGGTCGCTCTGCTGCTGGCCCCCGCGCCGGCGCTCAGCA GCCGCTCCCCCAGCCCCAGTCCCGACCACGGCAGGAGCAGTCGCCGCCCCCCGCGCGCCAGGATCTCCAGGGGCCACCGCTGCCCGAGGC AGCACCCGGGATCACCAGTTTTCGAAGCAGCCCCTGGCAGCAGCCACCTCCGCTGCAGCAGCGGCGGCGAGGACGCGAGCCTGAGGGCGC GACGGGGCTTCCCGGTGCTCCAGCGGCCGAGGGGGAGCCCGAGGAGGAGGACGGGGGCGCGGCTGGGCAGCGGAGAGACGGCCGGCCGGG GAGTAGCCACAACGGCAGCGGGGACGGGGGCGCTGCCGCCCCGAGCGCCCGACCCCGGGACTTCCTGTACGTGGGGGTGATGACCGCGCA GAAGTACCTGGGCAGCCGCGCGCTGGCCGCGCAGCGGACCTGGGCGCGTTTCATCCCGGGCCGCGTGGAGTTCTTTTCCAGCCAGCAGCC CCCCAACGCCGGCCAGCCCCCGCCACCCCTGCCTGTCATCGCGCTACCGGGTGTGGACGACTCCTATCCTCCCCAGAAAAAGTCCTTCAT GATGATCAAGTACATGCACGACCACTACCTGGACAAGTATGAGTGGTTCATGCGCGCCGACGACGATGTCTACATCAAAGGTGATAAATT AGAAGAGTTTCTTAGATCGCTAAACAGCAGTAAGCCTCTCTACCTGGGACAGACTGGCCTGGGGAATATTGAAGAGCTTGGAAAGCTGGG ACTGGAGCCTGGGGAAAACTTCTGTATGGGAGGACCTGGCATGATCTTTAGCCGAGAAGTTCTCAGGAGGATGGTGCCACATATTGGTGA ATGCCTTAGAGAAATGTACACGACTCATGAGGATGTGGAAGTAGGAAGATGCGTTCGCCGTTTTGGTGGGACTCAGTGTGTCTGGTCTTA CGAGGTCATGCGCATCGTGGATAATGTTCGTCCTGATCGACAGACGGTTATGTTTTCAGCTACTTTCCCCAGAGCTATGGAGGCTTTGGC TCGCAGGATCCTCAGTAAACCTATTGAAGTACAAGTTGGAGGCAGGAGTGTGGTTTGCTCAGATGTGGAGCAACAAGTGATTGTGATTGA AGAAGAAAAGAAATTCTTGAAGTTACTTGAGCTTCTAGGCCATTATCAAGAGTCAGGATCTGTCATTATATTTGTGGATAAGCAGGAACA TGCTGATGGTCTTCTTAAGGATTTAATGAGAGCATCTTATCCTTGCATGTCTCTTCATGGAGGCATTGATCAATATGACAGAGATAGCAT CATAAATGACTTTAAGAATGGGACCTGCAAACTTCTTGTGGCTACCTCTGTTGCTGCCCGAGGTCTAGATGTGAAACATCTGATTCTTGT AGTAAATTATAGCTGCCCCAACCATTATGAGGATTATGTACACAGAGCAGGGCGGACTGGAAGAGCAGGAAACAAGGGTTATGCTTATAC TTTTATCACAGAGGATCAAGCTCGCTATGCTGGTGACATAATTAAAGCTCTTGAATTGTCAGGGACTGCAGTACCTCCTGATTTAGAGAA ACTGTGGAGTGATTTCAAAGATCAGCAGAAAGCTGAGGGGAAAATAATTAAAAAGAGTAGTGGGTTCTCTGGTAAGGGATTCAAGTTTGA TGAAACAGAACAAGCTTTGGCTAATGAGAGGAAGAAGTTACAAAAAGCAGCTCTTGGTCTACAAGATTCAGATGATGAGGATGCTGCAGT TGATATTGATGAGCAAATTGAAAGCATGTTTAATTCAAAGAAGAGAGTAAAGGATATGGCTGCTCCTGGAACATCAAGTGTTCCTGCTCC AACTGCAGGAAATGCTGAGAAATTAGAAATTGCTAAGAGATTGGCTCTTAGAATCAATGCCCAGAAGAATTTGGGCATCGAGTCTCAGGT AGATGTGATGCAGCAGGCCACCAATGCAATTCTTAGGGGTGGCACCATTCTGGCTCCCACTGTTTCTGCAAAAACCATTGCAGAACAACT TGCTGAAAAGATCAATGCCAAGCTCAATTATGTGCCGTTAGAGAAACAAGAAGAAGAGAGACAGGATGGTGGACAGAATGAATCTTTTAA GAGATATGAAGAAGAATTAGAGATCAATGACTTCCCACAGACTGCTAGGTGGAAAGTTACCTCTAAGGAAGCTCTGCAGAGAATCAGTGA ATACTCTGAAGCCGCAATTACAATCAGAGGAACCTACTTCCCTCCTGGCAAAGAACCCAAGGAAGGCGAGCGGAAGATTTACTTGGCAAT TGAAAGTGCCAATGAACTGGCTGTGCAGAAAGCAAAGGCAGAAATCACCAGGCTCATAAAAGAAGAGCTGATCCGGCTGCAAAATTCATA CCAACCAACAAATAAAGGAAGATACAAAGTCTTATAGACATCCGGAAAAAAGATTTTTACCTGTGCTGGTCTATGATGTATGTGGCAGTT GCTGTCTGCAGTTTACAATGTATTGTAAATGAAGATTTTTTAAATTCTATCTTGCTGATTTTTTTTAAATATAAGAAACTGGTACTTGGT AAAGAAATCTGTCCGTAAGTACCCCCACAATCAGTCAAACTATATTTAAAGCCAGCCTGTTTTCAGAGTATGATGTCCTTTAATGTAAAC TCAAATATCAATATTTTAAATGTCCGGATAATATTCTAGAGGTTTAAAAAATGGAAATATTTGAACTTTCTATTGAAGACAATAAAGTAC ACAAGTCGTTAAGGGGCTATTCACTTTATCCTGTACTTTCAATGAAATTGTGATCATTTCCTAAGAAAAGGTAAAATTCACTATCATATT TTGTGTCCCCACCTTGATGTTACATGACTCTGGAACAATATGAACTGGATTTAAGAATGTTATAATAGAAGTCTTACAAAATGGGTTGAG AGTTTTTGTTTCAATTTTTATCATCATAAATGGGCAAAAAGTAGTTGGACTAATTTCGGTTTTTATACAAGTAAAGATTTAATAGTATAA GGATTTTTTTGCATTTCTTTACACTGAGTGTAAAACTCTACAAAGAGTTATAGTATTTACTACTTTGAGGTTTCCCTCACAACTTCTGGC TCCATACCTAGCCCCTCTTTTATAATCTTCCTTAAAAGAAAGAGTGTAGCCTATAAATACTAAATATGATACCTTTTCCTTCTAGAAAGT GTTTATTTATATATCTATACATGTTGTATGTACAAATATCCTACTACTTTTAATCTGATTTTTCTTCAGGATTATTGAGTAGGTTGTGAA TTTTCTTTCTTAAAAATTGTAAAACATAATGGTACCCAAGTTTTAAACTTAGATGTGCTTCATCTTAGTGAAATTTAATTCACAAGGAAT CATAAATTGTGTTTTTGAGGCTGGGCGCAGTGACTCACACCTGTATCCCAGCAATTTGGGAGGCCGAGGTGGGCAGATCACTTGAGGTCA GGAGTTCAAGACTAGCCTGGTCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGTCGGCATGGTGGTGGGTGGCTGTAAT CCCAGCTACTCAGGAGGCTGAGGCAGAAGAATCTGAGCCAAGATAACACCATTGCACTCCAGCCTGGGCGACAGAGTGAGACTATCTCAA AAATAAATAAATAAATAAATAAATAGTATTTTTGAGCCTTCAAGATACAGTTCCTGAATATTCTAATTTAAATTGTTATAATTGGATTAC CTAATATTCTTTTCAAGACTCCTGATGTATTAACTTCATGTTATTGTCACTTTTCAAAAAAGGAATTTTTTTCAGGAGTTAAATAAAGTC AGTCTTTTATATCCAAGGGTTTCAAACCCACAGATTAAACCAACCACAGATCAAAAATAGAAAAAAAAAAAAAAAGAAAAAAAGAATGTA AAATTTTAAAAATACAGTTTAACAGCTGTAAAAGTTTTACTATAACATTTACATTGTGTTAGGTATTTTAAGTAATTTAAAGGTTACAGT ATACAGGCGGTTAAAGTATACAGGAGGATGTGCATCGGTTATATGCATATAGCAAGCCATTTCATATAAGAGGCTTGAACATCCATGGAT TTTGGTATAGAGGAGGGGTTTAAGGGGTGTCCTGCAATCAGTCCCCCTCTCATACCAAAGGATGACTGTATATTTCTTAAATGAAGAGAC TTTCATTCTTTAAATATTATTGACTTACAGTTTAAAAATAAATAAATAAAAGCATACTATAGTTGTAAAAACAAATAATTTTAATAGTAT ATTCAGTGGCTGAAGTGATAGGGAGTATTAATCATTATTTCTTCAGTATAAAGTTATTCTTCCTGAAAAAGTAAGATATACCTGGGAAAT ATTCTTGGATCCTTCACACATCCACTTAATTTCTTGAAGGAAGAAAACAGACAAAAGACATGTAACAACAGAAACAAATAAACCACTTAC TGTAAAATTTCAGAAATTGTGGGCTCATTCCCTCCCTCTAGTTTATTTATTTGCTCATCTTTATCACCTAATGGTAGTTTGTTTTCTTTG GTAGAGTATATGGCAGTCCCACATCGATGATAATTGGTGCTCCCTTCATCCAACTGGATCACTTTGAGATTCAGTTTTACATCATTTTAG CATTTTGTTTGTATATCAGTTGTGATGAGCCACTGATAAAATTTTGTTCTAAAATGAAACATATTACTTTGTTAGTACATTTTTTAGTGT CACACTGACTTTTAAAATTTGAATGATATATAGACTTTGTTTTTTTAATGCAATATGAATATTTGCTCATGTTTTCTAAATTCCTTATAA >In-frame_CHSY3_ENST00000305031_chr5_129244053_+_DDX46_ENST00000354283_chr5_134130540_+_3504nt GGGTGGCAGCCTAGGAGCGGACGCGTTGCCGCCGCCGCTGCTCCTCCTCCTCCTCCTGCAGCTCCTCCAGCTGCCGCTGCTGCCGCCGCT GCCGCCACCGCCGCCGCCGGGAGAAGTTTCACTCCCGACCCTTGCTCGGAGCCCCGGCCCAGAGCTGAGCGGGAGCCCGGCAGGCAGCTG CAGCCCGCGGCAGTCGAGGCGTCCGCGGCGCTTCGACCTCCAGCCGGTGTCGGCGCCTAGGCGGCCGGCTGCGGCCGCGGCTGGGGGCGC AAAGGCGGAGGAGGGGCGGGTGTGAGCCGGGGAAACCGCGTGCCGCGCCGCGACAGCCCAGCGAGCGTCCGCGCCCGGGACAGCCGCGAT GGCTGTGCGCTCTCGCCGCCCGTGGATGAGCGTGGCATTAGGGCTGGTGCTGGGCTTCACCGCCGCGTCCTGGCTCATCGCCCCCAGGGT GGCGGAGCTGAGCGAGAGGAAGAGACGTGGCTCCAGCCTCTGCTCCTACTACGGTCGCTCTGCTGCTGGCCCCCGCGCCGGCGCTCAGCA GCCGCTCCCCCAGCCCCAGTCCCGACCACGGCAGGAGCAGTCGCCGCCCCCCGCGCGCCAGGATCTCCAGGGGCCACCGCTGCCCGAGGC AGCACCCGGGATCACCAGTTTTCGAAGCAGCCCCTGGCAGCAGCCACCTCCGCTGCAGCAGCGGCGGCGAGGACGCGAGCCTGAGGGCGC GACGGGGCTTCCCGGTGCTCCAGCGGCCGAGGGGGAGCCCGAGGAGGAGGACGGGGGCGCGGCTGGGCAGCGGAGAGACGGCCGGCCGGG GAGTAGCCACAACGGCAGCGGGGACGGGGGCGCTGCCGCCCCGAGCGCCCGACCCCGGGACTTCCTGTACGTGGGGGTGATGACCGCGCA GAAGTACCTGGGCAGCCGCGCGCTGGCCGCGCAGCGGACCTGGGCGCGTTTCATCCCGGGCCGCGTGGAGTTCTTTTCCAGCCAGCAGCC CCCCAACGCCGGCCAGCCCCCGCCACCCCTGCCTGTCATCGCGCTACCGGGTGTGGACGACTCCTATCCTCCCCAGAAAAAGTCCTTCAT GATGATCAAGTACATGCACGACCACTACCTGGACAAGTATGAGTGGTTCATGCGCGCCGACGACGATGTCTACATCAAAGGTGATAAATT AGAAGAGTTTCTTAGATCGCTAAACAGCAGTAAGCCTCTCTACCTGGGACAGACTGGCCTGGGGAATATTGAAGAGCTTGGAAAGCTGGG ACTGGAGCCTGGGGAAAACTTCTGTATGGGAGGACCTGGCATGATCTTTAGCCGAGAAGTTCTCAGGAGGATGGTGCCACATATTGGTGA ATGCCTTAGAGAAATGTACACGACTCATGAGGATGTGGAAGTAGGAAGATGCGTTCGCCGTTTTGGTGGGACTCAGTGTGTCTGGTCTTA CGAGGTCATGCGCATCGTGGATAATGTTCGTCCTGATCGACAGACGGTTATGTTTTCAGCTACTTTCCCCAGAGCTATGGAGGCTTTGGC TCGCAGGATCCTCAGTAAACCTATTGAAGTACAAGTTGGAGGCAGGAGTGTGGTTTGCTCAGATGTGGAGCAACAAGTGATTGTGATTGA AGAAGAAAAGAAATTCTTGAAGTTACTTGAGCTTCTAGGCCATTATCAAGAGTCAGGATCTGTCATTATATTTGTGGATAAGCAGGAACA TGCTGATGGTCTTCTTAAGGATTTAATGAGAGCATCTTATCCTTGCATGTCTCTTCATGGAGGCATTGATCAATATGACAGAGATAGCAT CATAAATGACTTTAAGAATGGGACCTGCAAACTTCTTGTGGCTACCTCTGTTGCTGCCCGAGGTCTAGATGTGAAACATCTGATTCTTGT AGTAAATTATAGCTGCCCCAACCATTATGAGGATTATGTACACAGAGCAGGGCGGACTGGAAGAGCAGGAAACAAGGGTTATGCTTATAC TTTTATCACAGAGGATCAAGCTCGCTATGCTGGTGACATAATTAAAGCTCTTGAATTGTCAGGGACTGCAGTACCTCCTGATTTAGAGAA ACTGTGGAGTGATTTCAAAGATCAGCAGAAAGCTGAGGGGAAAATAATTAAAAAGAGTAGTGGGTTCTCTGGTAAGGGATTCAAGTTTGA TGAAACAGAACAAGCTTTGGCTAATGAGAGGAAGAAGTTACAAAAAGCAGCTCTTGGTCTACAAGATTCAGATGATGAGGATGCTGCAGT TGATATTGATGAGCAAATTGAAAGCATGTTTAATTCAAAGAAGAGAGTAAAGGATATGGCTGCTCCTGGAACATCAAGTGTTCCTGCTCC AACTGCAGGAAATGCTGAGAAATTAGAAATTGCTAAGAGATTGGCTCTTAGAATCAATGCCCAGAAGAATTTGGGCATCGAGTCTCAGGA TGTGATGCAGCAGGCCACCAATGCAATTCTTAGGGGTGGCACCATTCTGGCTCCCACTGTTTCTGCAAAAACCATTGCAGAACAACTTGC TGAAAAGATCAATGCCAAGCTCAATTATGTGCCGTTAGAGAAACAAGAAGAAGAGAGACAGGATGGTGGACAGAATGAATCTTTTAAGAG ATATGAAGAAGAATTAGAGATCAATGACTTCCCACAGACTGCTAGGTGGAAAGTTACCTCTAAGGAAGCTCTGCAGAGAATCAGTGAATA CTCTGAAGCCGCAATTACAATCAGAGGAACCTACTTCCCTCCTGGCAAAGAACCCAAGGAAGGCGAGCGGAAGATTTACTTGGCAATTGA AAGTGCCAATGAACTGGCTGTGCAGAAAGCAAAGGCAGAAATCACCAGGCTCATAAAAGAAGAGCTGATCCGGCTGCAAAATTCATACCA ACCAACAAATAAAGGAAGATACAAAGTCTTATAGACATCCGGAAAAAAGATTTTTACCTGTGCTGGTCTATGATGTATGTGGCAGTTGCT GTCTGCAGTTTACAATGTATTGTAAATGAAGATTTTTTAAATTCTATCTTGCTGATTTTTTTTAAATATAAGAAACTGGTACTTGGTAAA GAAATCTGTCCGTAAGTACCCCCACAATCAGTCAAACTATATTTAAAGCCAGCCTGTTTTCAGAGTATGATGTCCTTTAATGTAAACTCA AATATCAATATTTTAAATGTCCGGATAATATTCTAGAGGTTTAAAAAATGGAAATATTTGAACTTTCTATTGAAGACAATAAAGTACACA AGTCGTTAAGGGGCTATTCACTTTATCCTGTACTTTCAATGAAATTGTGATCATTTCCTAAGAAAAGGTAAAATTCACTATCATATTTTG TGTCCCCACCTTGATGTTACATGACTCTGGAACAATATGAACTGGATTTAAGAATGTTATAATAGAAGTCTTACAAAATGGGTTGAGAGT |
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FusionGenePPI for CHSY3_DDX46 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
CHSY3 | PLAUR, SIAE, ISLR, FOXN3, CHSY1, SCGB2A2, LRFN4, GOLPH3, GDPD5, ADAM21, RMND1, CCPG1, P3H4, MGAT4C, STK17B | DDX46 | SF3A2, TCEA1, ELAVL1, SIRT7, CUL3, SRSF11, SF3A3, SMIM20, GEMIN5, PNLIPRP2, TPM2, SRPK2, LMNA, PRPF40A, APBB1, RPA3, RPA2, RPA1, HUWE1, CUL7, OBSL1, ABCE1, SERPINB5, SNRPA1, LUC7L2, EEF1D, MYO18A, RCOR1, RTN4, SF3A1, UBR4, VAPA, PPIA, SIN3A, NTRK1, SNW1, CDC5L, RC3H1, JMJD6, SNRPE, SNRNP27, MTUS2, HSD3B2, FUOM, CD2BP2, INO80B, TRIM25, HEY1 |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for CHSY3_DDX46 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for CHSY3_DDX46 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |