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Fusion gene ID: 7094 |
FusionGeneSummary for CHL1_CHL1 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: CHL1_CHL1 | Fusion gene ID: 7094 | Hgene | Tgene | Gene symbol | CHL1 | CHL1 | Gene ID | 10752 | 10752 |
| Gene name | cell adhesion molecule L1 like | cell adhesion molecule L1 like | |
| Synonyms | CALL|L1CAM2 | CALL|L1CAM2 | |
| Cytomap | 3p26.3 | 3p26.3 | |
| Type of gene | protein-coding | protein-coding | |
| Description | neural cell adhesion molecule L1-like proteinL1 cell adhesion molecule 2cell adhesion molecule with homology to L1CAM (close homolog of L1)cell adhesion molecule with homology to L1CAM (close homologue of L1)close homolog of L1 | neural cell adhesion molecule L1-like proteinL1 cell adhesion molecule 2cell adhesion molecule with homology to L1CAM (close homolog of L1)cell adhesion molecule with homology to L1CAM (close homologue of L1)close homolog of L1 | |
| Modification date | 20180519 | 20180519 | |
| UniProtAcc | O00533 | O00533 | |
| Ensembl transtripts involved in fusion gene | ENST00000256509, ENST00000397491, ENST00000489224, | ENST00000256509, ENST00000397491, ENST00000489224, | |
| Fusion gene scores | * DoF score | 3 X 3 X 2=18 | 4 X 4 X 4=64 |
| # samples | 3 | 4 | |
| ** MAII score | log2(3/18*10)=0.736965594166206 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(4/64*10)=-0.678071905112638 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: CHL1 [Title/Abstract] AND CHL1 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChiTaRS3.1 | BU678757 | CHL1 | chr3 | 447766 | - | CHL1 | chr3 | 447411 | + |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| 3UTR-3UTR | ENST00000256509 | ENST00000256509 | CHL1 | chr3 | 447766 | - | CHL1 | chr3 | 447411 | + |
| 3UTR-3UTR | ENST00000256509 | ENST00000397491 | CHL1 | chr3 | 447766 | - | CHL1 | chr3 | 447411 | + |
| 3UTR-intron | ENST00000256509 | ENST00000489224 | CHL1 | chr3 | 447766 | - | CHL1 | chr3 | 447411 | + |
| 3UTR-3UTR | ENST00000397491 | ENST00000256509 | CHL1 | chr3 | 447766 | - | CHL1 | chr3 | 447411 | + |
| 3UTR-3UTR | ENST00000397491 | ENST00000397491 | CHL1 | chr3 | 447766 | - | CHL1 | chr3 | 447411 | + |
| 3UTR-intron | ENST00000397491 | ENST00000489224 | CHL1 | chr3 | 447766 | - | CHL1 | chr3 | 447411 | + |
| intron-3UTR | ENST00000489224 | ENST00000256509 | CHL1 | chr3 | 447766 | - | CHL1 | chr3 | 447411 | + |
| intron-3UTR | ENST00000489224 | ENST00000397491 | CHL1 | chr3 | 447766 | - | CHL1 | chr3 | 447411 | + |
| intron-intron | ENST00000489224 | ENST00000489224 | CHL1 | chr3 | 447766 | - | CHL1 | chr3 | 447411 | + |
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FusionProtFeatures for CHL1_CHL1 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| CHL1 | CHL1 |
| Extracellular matrix and cell adhesion protein thatplays a role in nervous system development and in synapticplasticity. Both soluble and membranous forms promote neuriteoutgrowth of cerebellar and hippocampal neurons and suppressneuronal cell death. Plays a role in neuronal positioning ofpyramidal neurons and in regulation of both the number ofinterneurons and the efficacy of GABAergic synapses. May play arole in regulating cell migration in nerve regeneration andcortical development. Potentiates integrin-dependent cellmigration towards extracellular matrix proteins. Recruits ANK3 tothe plasma membrane (By similarity). {ECO:0000250}. | Extracellular matrix and cell adhesion protein thatplays a role in nervous system development and in synapticplasticity. Both soluble and membranous forms promote neuriteoutgrowth of cerebellar and hippocampal neurons and suppressneuronal cell death. Plays a role in neuronal positioning ofpyramidal neurons and in regulation of both the number ofinterneurons and the efficacy of GABAergic synapses. May play arole in regulating cell migration in nerve regeneration andcortical development. Potentiates integrin-dependent cellmigration towards extracellular matrix proteins. Recruits ANK3 tothe plasma membrane (By similarity). {ECO:0000250}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for CHL1_CHL1 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for CHL1_CHL1 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for CHL1_CHL1 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for CHL1_CHL1 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Hgene | CHL1 | C0036341 | Schizophrenia | 2 | CTD_human |
| Hgene | CHL1 | C0015923 | Fetal Alcohol Syndrome | 1 | PSYGENET |
| Hgene | CHL1 | C2985290 | Fetal Alcohol Spectrum Disorders | 1 | PSYGENET |
| Hgene | CHL1 | C3714756 | Intellectual Disability | 1 | CTD_human |
| Tgene | CHL1 | C0036341 | Schizophrenia | 2 | CTD_human |
| Tgene | CHL1 | C0015923 | Fetal Alcohol Syndrome | 1 | PSYGENET |
| Tgene | CHL1 | C2985290 | Fetal Alcohol Spectrum Disorders | 1 | PSYGENET |
| Tgene | CHL1 | C3714756 | Intellectual Disability | 1 | CTD_human |
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