FusionGDB Logo

Home

Download

Statistics

Examples

Help

Contact

Center for Computational Systems Medicine
leaf

FusionGeneSummary

leaf

FusionProtFeature

leaf

FusionGeneSequence

leaf

FusionGenePPI

leaf

RelatedDrugs

leaf

RelatedDiseases

Fusion gene ID: 6554

FusionGeneSummary for CDK4_ANO5

check button Fusion gene summary
Fusion gene informationFusion gene name: CDK4_ANO5
Fusion gene ID: 6554
HgeneTgene
Gene symbol

CDK4

ANO5

Gene ID

1019

203859

Gene namecyclin dependent kinase 4anoctamin 5
SynonymsCMM3|PSK-J3GDD1|LGMD2L|TMEM16E
Cytomap

12q14.1

11p14.3

Type of geneprotein-codingprotein-coding
Descriptioncyclin-dependent kinase 4cell division protein kinase 4anoctamin-5gnathodiaphyseal dysplasia 1 proteinintegral membrane protein GDD1transmembrane protein 16E
Modification date2018052320180520
UniProtAcc

P11802

Q75V66

Ensembl transtripts involved in fusion geneENST00000257904, ENST00000312990, 
ENST00000549606, ENST00000540325, 
ENST00000551888, 
ENST00000324559, 
ENST00000532043, 
Fusion gene scores* DoF score4 X 4 X 3=483 X 3 X 3=27
# samples 43
** MAII scorelog2(4/48*10)=-0.263034405833794
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(3/27*10)=0.15200309344505
effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs).
DoF>8 and MAII>0
Context

PubMed: CDK4 [Title/Abstract] AND ANO5 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneCDK4

GO:0006468

protein phosphorylation

8114739

HgeneCDK4

GO:0010971

positive regulation of G2/M transition of mitotic cell cycle

19124461

HgeneCDK4

GO:0071157

negative regulation of cell cycle arrest

19124461

TgeneANO5

GO:0006821

chloride transport

22946059


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGALDSARCTCGA-DX-AB36-01ACDK4chr12

58145958

-ANO5chr11

22291858

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5UTR-3CDSENST00000257904ENST00000324559CDK4chr12

58145958

-ANO5chr11

22291858

+
5UTR-intronENST00000257904ENST00000532043CDK4chr12

58145958

-ANO5chr11

22291858

+
5UTR-3CDSENST00000312990ENST00000324559CDK4chr12

58145958

-ANO5chr11

22291858

+
5UTR-intronENST00000312990ENST00000532043CDK4chr12

58145958

-ANO5chr11

22291858

+
5UTR-3CDSENST00000549606ENST00000324559CDK4chr12

58145958

-ANO5chr11

22291858

+
5UTR-intronENST00000549606ENST00000532043CDK4chr12

58145958

-ANO5chr11

22291858

+
5UTR-3CDSENST00000540325ENST00000324559CDK4chr12

58145958

-ANO5chr11

22291858

+
5UTR-intronENST00000540325ENST00000532043CDK4chr12

58145958

-ANO5chr11

22291858

+
5UTR-3CDSENST00000551888ENST00000324559CDK4chr12

58145958

-ANO5chr11

22291858

+
5UTR-intronENST00000551888ENST00000532043CDK4chr12

58145958

-ANO5chr11

22291858

+

Top

FusionProtFeatures for CDK4_ANO5


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
CDK4

P11802

ANO5

Q75V66

Ser/Thr-kinase component of cyclin D-CDK4 (DC) complexesthat phosphorylate and inhibit members of the retinoblastoma (RB)protein family including RB1 and regulate the cell-cycle duringG(1)/S transition. Phosphorylation of RB1 allows dissociation ofthe transcription factor E2F from the RB/E2F complexes and thesubsequent transcription of E2F target genes which are responsiblefor the progression through the G(1) phase. Hypophosphorylates RB1in early G(1) phase. Cyclin D-CDK4 complexes are major integratorsof various mitogenenic and antimitogenic signals. Alsophosphorylates SMAD3 in a cell-cycle-dependent manner andrepresses its transcriptional activity. Component of the ternarycomplex, cyclin D/CDK4/CDKN1B, required for nuclear translocationand activity of the cyclin D-CDK4 complex.{ECO:0000269|PubMed:15241418, ECO:0000269|PubMed:18827403,ECO:0000269|PubMed:9003781}. Does not exhibit calcium-activated chloride channel(CaCC) activity. {ECO:0000269|PubMed:20056604,ECO:0000269|PubMed:23047743}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


Top

FusionGeneSequence for CDK4_ANO5


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

Top

FusionGenePPI for CDK4_ANO5


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
CDK4CDKN2D, VTA1, CDKN2B, CCND3, CDKN2C, CDC37, CDKN2A, RPRM, ACTR3B, DBNL, SMC3, GEMIN4, UBXN1, SMC1A, LYN, SERTAD1, BAG6, SETDB1, CAPNS1, CCND1, PCNA, CCND2, CDKN1B, CNOT7, RFC1, BRCA1, CEBPA, MYOD1, BIRC5, CDKN1A, RB1, SP1, SAP25, CDT1, HSPA8, NCOA2, TSPYL2, WDR77, PRMT5, ARID4A, PPP2R1B, PPP2R1A, UHRF2, IRF8, DAZAP2, SNCA, TK1, APLP1, DDAH2, ZBTB16, QARS, HMGXB3, TRMT2A, ATP5B, PKM, LUC7L2, ANXA7, HSP90AA1, HIST1H1D, PSMD9, HIST1H1A, CDK5R1, ARRB2, MARCKS, RPL34, PSMA6, CCNE1, CCNA2, PPP1CA, CUL3, CUL4B, CUL1, COPS5, COPS6, H1F0, PSMD10, APP, UBTF, POLD1, VCP, SMAD3, SMAD2, FOXM1, CDC6, GLI1, MYC, OTX2, RBL1, RBL2, SHOX2, MZF1, SLBP, ANKRD12, SENP3, ZNF219, BCL11A, WDR33, ZNF335, ZNF101, MCM2, CDC7, UCHL1, KLHL32, CAMK1, PTMA, IL15RA, DUSP9, PGD, SKP1, CIB1, MAPRE2, CDK13, TARDBP, HSP90AB1, CDK6, TRAP1, FKBP5, RELA, HOOK1, LIMK2, RCAN3, HSP90AB4P, HSP90AB3P, HSP90AA5P, OGFR, EIF1AX, GUSB, OGFRL1, JAK3, GFER, VSIG8, NTRK1, ANKRA2, CEP135, IQGAP1, SMTN, SORBS1, NUP133, ZNFX1, ZC3H14, TMEM126A, ASPM, UBXN10, VHL, HDAC1, PRKDC, CHEK2, ERBB2, BCL2, TOP1, PTEN, YBX3, USP17L2, FNIP1, FNIP2, MTMR14, MTMR8, VTN, PTPN1, PTPN21, DNAJC9, E2F4, CDKN1CANO5EGFR, PTGIR


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


Top

RelatedDrugs for CDK4_ANO5


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status
HgeneCDK4P11802DB09073PalbociclibCyclin-dependent kinase 4small moleculeapproved|investigational

Top

RelatedDiseases for CDK4_ANO5


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneCDK4C0024668Mammary Neoplasms, Experimental3CTD_human
HgeneCDK4C1836892MELANOMA, CUTANEOUS MALIGNANT, SUSCEPTIBILITY TO, 33CTD_human;UNIPROT
HgeneCDK4C0023827liposarcoma2CTD_human
HgeneCDK4C0024667Animal Mammary Neoplasms2CTD_human
HgeneCDK4C0006118Brain Neoplasms1CTD_human
HgeneCDK4C0027659Neoplasms, Experimental1CTD_human
HgeneCDK4C0038356Stomach Neoplasms1CTD_human
HgeneCDK4C0677866Brain Stem Neoplasms1CTD_human
HgeneCDK4C2239176Liver carcinoma1CTD_human
TgeneANO5C1833736Osteogenesis imperfecta, Levin type2CTD_human;ORPHANET;UNIPROT
TgeneANO5C1969785MUSCULAR DYSTROPHY, LIMB-GIRDLE, TYPE 2L (disorder)1CTD_human;ORPHANET;UNIPROT
TgeneANO5C2750076Miyoshi Muscular Dystrophy 31CTD_human;ORPHANET;UNIPROT