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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 6212

FusionGeneSummary for CD59_FBXO3

check button Fusion gene summary
Fusion gene informationFusion gene name: CD59_FBXO3
Fusion gene ID: 6212
HgeneTgene
Gene symbol

CD59

FBXO3

Gene ID

966

26273

Gene nameCD59 molecule (CD59 blood group)F-box protein 3
Synonyms16.3A5|1F5|EJ16|EJ30|EL32|G344|HRF-20|HRF20|MAC-IP|MACIF|MEM43|MIC11|MIN1|MIN2|MIN3|MIRL|MSK21|p18-20FBA|FBX3
Cytomap

11p13

11p13

Type of geneprotein-codingprotein-coding
DescriptionCD59 glycoprotein1F5 antigen20 kDa homologous restriction factorCD59 antigen p18-20 (antigen identified by monoclonal antibodies 16.3A5, EJ16, EJ30, EL32 and G344)CD59 molecule, complement regulatory proteinLy-6-like proteinMEM43 antigenT cell-actiF-box only protein 3F-box protein FBX3
Modification date2018052320180519
UniProtAcc

P13987

Q9UK99

Ensembl transtripts involved in fusion geneENST00000534312, ENST00000395850, 
ENST00000533403, ENST00000351554, 
ENST00000415002, ENST00000445143, 
ENST00000426650, ENST00000437761, 
ENST00000527577, ENST00000528700, 
ENST00000526785, ENST00000265651, 
ENST00000530401, ENST00000531080, 
ENST00000532057, ENST00000534136, 
ENST00000448981, ENST00000533103, 
Fusion gene scores* DoF score5 X 8 X 2=804 X 3 X 1=12
# samples 144
** MAII scorelog2(14/80*10)=0.807354922057604
effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs).
DoF>8 and MAII>0
log2(4/12*10)=1.73696559416621
effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs).
DoF>8 and MAII>0
Context

PubMed: CD59 [Title/Abstract] AND FBXO3 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGARVBRCATCGA-A7-A13D-01BCD59chr11

33731752

-FBXO3chr11

33780147

-
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
In-frameENST00000534312ENST00000526785CD59chr11

33731752

-FBXO3chr11

33780147

-
In-frameENST00000534312ENST00000265651CD59chr11

33731752

-FBXO3chr11

33780147

-
In-frameENST00000534312ENST00000530401CD59chr11

33731752

-FBXO3chr11

33780147

-
5CDS-intronENST00000534312ENST00000531080CD59chr11

33731752

-FBXO3chr11

33780147

-
5CDS-intronENST00000534312ENST00000532057CD59chr11

33731752

-FBXO3chr11

33780147

-
5CDS-intronENST00000534312ENST00000534136CD59chr11

33731752

-FBXO3chr11

33780147

-
5CDS-intronENST00000534312ENST00000448981CD59chr11

33731752

-FBXO3chr11

33780147

-
5CDS-5UTRENST00000534312ENST00000533103CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-3CDSENST00000395850ENST00000526785CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-3CDSENST00000395850ENST00000265651CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-3CDSENST00000395850ENST00000530401CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-intronENST00000395850ENST00000531080CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-intronENST00000395850ENST00000532057CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-intronENST00000395850ENST00000534136CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-intronENST00000395850ENST00000448981CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-5UTRENST00000395850ENST00000533103CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-3CDSENST00000533403ENST00000526785CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-3CDSENST00000533403ENST00000265651CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-3CDSENST00000533403ENST00000530401CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-intronENST00000533403ENST00000531080CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-intronENST00000533403ENST00000532057CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-intronENST00000533403ENST00000534136CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-intronENST00000533403ENST00000448981CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-5UTRENST00000533403ENST00000533103CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-3CDSENST00000351554ENST00000526785CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-3CDSENST00000351554ENST00000265651CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-3CDSENST00000351554ENST00000530401CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-intronENST00000351554ENST00000531080CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-intronENST00000351554ENST00000532057CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-intronENST00000351554ENST00000534136CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-intronENST00000351554ENST00000448981CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-5UTRENST00000351554ENST00000533103CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-3CDSENST00000415002ENST00000526785CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-3CDSENST00000415002ENST00000265651CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-3CDSENST00000415002ENST00000530401CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-intronENST00000415002ENST00000531080CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-intronENST00000415002ENST00000532057CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-intronENST00000415002ENST00000534136CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-intronENST00000415002ENST00000448981CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-5UTRENST00000415002ENST00000533103CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-3CDSENST00000445143ENST00000526785CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-3CDSENST00000445143ENST00000265651CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-3CDSENST00000445143ENST00000530401CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-intronENST00000445143ENST00000531080CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-intronENST00000445143ENST00000532057CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-intronENST00000445143ENST00000534136CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-intronENST00000445143ENST00000448981CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-5UTRENST00000445143ENST00000533103CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-3CDSENST00000426650ENST00000526785CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-3CDSENST00000426650ENST00000265651CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-3CDSENST00000426650ENST00000530401CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-intronENST00000426650ENST00000531080CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-intronENST00000426650ENST00000532057CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-intronENST00000426650ENST00000534136CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-intronENST00000426650ENST00000448981CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-5UTRENST00000426650ENST00000533103CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-3CDSENST00000437761ENST00000526785CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-3CDSENST00000437761ENST00000265651CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-3CDSENST00000437761ENST00000530401CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-intronENST00000437761ENST00000531080CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-intronENST00000437761ENST00000532057CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-intronENST00000437761ENST00000534136CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-intronENST00000437761ENST00000448981CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-5UTRENST00000437761ENST00000533103CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-3CDSENST00000527577ENST00000526785CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-3CDSENST00000527577ENST00000265651CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-3CDSENST00000527577ENST00000530401CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-intronENST00000527577ENST00000531080CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-intronENST00000527577ENST00000532057CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-intronENST00000527577ENST00000534136CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-intronENST00000527577ENST00000448981CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-5UTRENST00000527577ENST00000533103CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-3CDSENST00000528700ENST00000526785CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-3CDSENST00000528700ENST00000265651CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-3CDSENST00000528700ENST00000530401CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-intronENST00000528700ENST00000531080CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-intronENST00000528700ENST00000532057CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-intronENST00000528700ENST00000534136CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-intronENST00000528700ENST00000448981CD59chr11

33731752

-FBXO3chr11

33780147

-
intron-5UTRENST00000528700ENST00000533103CD59chr11

33731752

-FBXO3chr11

33780147

-

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FusionProtFeatures for CD59_FBXO3


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
CD59

P13987

FBXO3

Q9UK99

Potent inhibitor of the complement membrane attackcomplex (MAC) action. Acts by binding to the C8 and/or C9complements of the assembling MAC, thereby preventingincorporation of the multiple copies of C9 required for completeformation of the osmolytic pore. This inhibitor appears to bespecies-specific. Involved in signal transduction for T-cellactivation complexed to a protein tyrosine kinase. The soluble form from urine retains its specificcomplement binding activity, but exhibits greatly reduced abilityto inhibit MAC assembly on cell membranes. Substrate recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. Mediates theubiquitination of HIPK2 and probably that of EP300, leading torapid degradation by the proteasome. In the presence of PML, HIPK2ubiquitination still occurs, but degradation is prevented. PML,HIPK2 and FBXO3 may act synergically to activate p53/TP53-dependent transactivation. {ECO:0000269|PubMed:18809579}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
>>>>>>>>>>>>
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
TgeneFBXO3chr11:33731752chr11:33780147ENST00000265651-211418_452119472Compositional biasNote=Asp/Glu-rich (highly acidic)
TgeneFBXO3chr11:33731752chr11:33780147ENST00000265651-211453_456119472Compositional biasNote=Poly-Arg
TgeneFBXO3chr11:33731752chr11:33780147ENST00000265651-211463_466119472Compositional biasNote=Poly-Arg
TgeneFBXO3chr11:33731752chr11:33780147ENST00000448981-210418_452119416Compositional biasNote=Asp/Glu-rich (highly acidic)
TgeneFBXO3chr11:33731752chr11:33780147ENST00000448981-210453_456119416Compositional biasNote=Poly-Arg
TgeneFBXO3chr11:33731752chr11:33780147ENST00000448981-210463_466119416Compositional biasNote=Poly-Arg
TgeneFBXO3chr11:33731752chr11:33780147ENST00000530401-210418_452114411Compositional biasNote=Asp/Glu-rich (highly acidic)
TgeneFBXO3chr11:33731752chr11:33780147ENST00000530401-210453_456114411Compositional biasNote=Poly-Arg
TgeneFBXO3chr11:33731752chr11:33780147ENST00000530401-210463_466114411Compositional biasNote=Poly-Arg
TgeneFBXO3chr11:33731752chr11:33780147ENST00000265651-211278_408119472DomainApaG
TgeneFBXO3chr11:33731752chr11:33780147ENST00000448981-210278_408119416DomainApaG
TgeneFBXO3chr11:33731752chr11:33780147ENST00000530401-210278_408114411DomainApaG

- In-frame and not-retained protein feature among the 13 regional features.
>>>>>>>>
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneCD59chr11:33731752chr11:33780147ENST00000351554-1526_108-43129DomainNote=UPAR/Ly6
HgeneCD59chr11:33731752chr11:33780147ENST00000395850-1426_108-26129DomainNote=UPAR/Ly6
HgeneCD59chr11:33731752chr11:33780147ENST00000415002-1326_108-89129DomainNote=UPAR/Ly6
HgeneCD59chr11:33731752chr11:33780147ENST00000426650-1426_108-18129DomainNote=UPAR/Ly6
HgeneCD59chr11:33731752chr11:33780147ENST00000437761-1426_108-58129DomainNote=UPAR/Ly6
HgeneCD59chr11:33731752chr11:33780147ENST00000445143-1426_108-37129DomainNote=UPAR/Ly6
HgeneCD59chr11:33731752chr11:33780147ENST00000527577-1526_108-60129DomainNote=UPAR/Ly6
HgeneCD59chr11:33731752chr11:33780147ENST00000528700-1626_108-74129DomainNote=UPAR/Ly6
TgeneFBXO3chr11:33731752chr11:33780147ENST00000265651-21110_56119472DomainF-box
TgeneFBXO3chr11:33731752chr11:33780147ENST00000448981-21010_56119416DomainF-box
TgeneFBXO3chr11:33731752chr11:33780147ENST00000530401-21010_56114411DomainF-box


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FusionGeneSequence for CD59_FBXO3


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for CD59_FBXO3


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
CD59NCR1, NCR3, C9, C8A, CD8A, SMAD4, CFTR, PAN2, GRB2, EGFR, ABCE1, CD27, TINAGL1, DBN1, FLNA, UBE2A, ATP6AP2, SYNPO, MAPRE1, GOLT1B, TMPRSS11B, GALK2, IGFBP1FBXO3RBX1, TNFAIP3, CUL3, CUL1, COPS5, NEDD8, PML, SKP1, HIPK2, EP300, HSP90AA1, DCP2, IDS, SMURF1, MCM2, CDC73, AIRE, PTPDC1, FBXO3, INO80B, ZNHIT2, FBXL2


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for CD59_FBXO3


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for CD59_FBXO3


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneCD59C2676767CD59 Deficiency1CTD_human;ORPHANET;UNIPROT