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Fusion gene ID: 6130 |
FusionGeneSummary for CD151_MIPEP |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: CD151_MIPEP | Fusion gene ID: 6130 | Hgene | Tgene | Gene symbol | CD151 | MIPEP | Gene ID | 977 | 4285 |
| Gene name | CD151 molecule (Raph blood group) | mitochondrial intermediate peptidase | |
| Synonyms | GP27|MER2|PETA-3|RAPH|SFA1|TSPAN24 | COXPD31|HMIP|MIP | |
| Cytomap | 11p15.5 | 13q12.12 | |
| Type of gene | protein-coding | protein-coding | |
| Description | CD151 antigenCD151 antigen (Raph blood group)hemidesmosomal tetraspanin CD151membrane glycoprotein SFA-1platelet surface glycoprotein gp27platelet-endothelial cell tetraspan antigen 3platelet-endothelial tetraspan antigen 3tetraspanin-24tspan-24 | mitochondrial intermediate peptidase | |
| Modification date | 20180523 | 20180523 | |
| UniProtAcc | P48509 | Q99797 | |
| Ensembl transtripts involved in fusion gene | ENST00000397420, ENST00000322008, ENST00000397421, ENST00000528011, ENST00000525181, | ENST00000382172, ENST00000469167, | |
| Fusion gene scores | * DoF score | 2 X 2 X 2=8 | 9 X 7 X 7=441 |
| # samples | 2 | 9 | |
| ** MAII score | log2(2/8*10)=1.32192809488736 | log2(9/441*10)=-2.29278174922785 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: CD151 [Title/Abstract] AND MIPEP [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | CD151 | GO:0030335 | positive regulation of cell migration | 17716972 |
| Hgene | CD151 | GO:0044319 | wound healing, spreading of cells | 17716972 |
| Hgene | CD151 | GO:0045807 | positive regulation of endocytosis | 17716972 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | LD | BRCA | TCGA-AN-A0AJ-01A | CD151 | chr11 | 833026 | + | MIPEP | chr13 | 24334356 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| 5UTR-3CDS | ENST00000397420 | ENST00000382172 | CD151 | chr11 | 833026 | + | MIPEP | chr13 | 24334356 | - |
| 5UTR-intron | ENST00000397420 | ENST00000469167 | CD151 | chr11 | 833026 | + | MIPEP | chr13 | 24334356 | - |
| 5UTR-3CDS | ENST00000322008 | ENST00000382172 | CD151 | chr11 | 833026 | + | MIPEP | chr13 | 24334356 | - |
| 5UTR-intron | ENST00000322008 | ENST00000469167 | CD151 | chr11 | 833026 | + | MIPEP | chr13 | 24334356 | - |
| 5UTR-3CDS | ENST00000397421 | ENST00000382172 | CD151 | chr11 | 833026 | + | MIPEP | chr13 | 24334356 | - |
| 5UTR-intron | ENST00000397421 | ENST00000469167 | CD151 | chr11 | 833026 | + | MIPEP | chr13 | 24334356 | - |
| intron-3CDS | ENST00000528011 | ENST00000382172 | CD151 | chr11 | 833026 | + | MIPEP | chr13 | 24334356 | - |
| intron-intron | ENST00000528011 | ENST00000469167 | CD151 | chr11 | 833026 | + | MIPEP | chr13 | 24334356 | - |
| intron-3CDS | ENST00000525181 | ENST00000382172 | CD151 | chr11 | 833026 | + | MIPEP | chr13 | 24334356 | - |
| intron-intron | ENST00000525181 | ENST00000469167 | CD151 | chr11 | 833026 | + | MIPEP | chr13 | 24334356 | - |
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FusionProtFeatures for CD151_MIPEP |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| CD151 | MIPEP |
| Essential for the proper assembly of the glomerular andtubular basement membranes in kidney.{ECO:0000269|PubMed:15265795}. (Microbial infection) Plays a role in humanpapillomavirus 16/HPV-16 endocytosis upon binding to cell surfacereceptor. {ECO:0000269|PubMed:24553111}. | Cleaves proteins, imported into the mitochondrion, totheir mature size. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for CD151_MIPEP |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for CD151_MIPEP |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| CD151 | CD82, CD46, ITGA3, PTGFRN, ITGB1, GRAMD1C, TMPRSS11B, NCEH1, TRIM25 | MIPEP | ILK, MAPK6, CUL3, MYC, HTT, FOXS1, MRM1, LOC554223, NME4, PAK7, CISD3, CDC42SE1, MGME1, FOXRED2, WDTC1, DCTN1, SPINK2, INA, EXOC3L2, HSDL2, TMEM70, ADPGK, DEFA6, TRIM43, GRPR |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for CD151_MIPEP |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for CD151_MIPEP |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
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