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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 5954

FusionGeneSummary for CCDC97_PRKCE

check button Fusion gene summary
Fusion gene informationFusion gene name: CCDC97_PRKCE
Fusion gene ID: 5954
HgeneTgene
Gene symbol

CCDC97

PRKCE

Gene ID

90324

5581

Gene namecoiled-coil domain containing 97protein kinase C epsilon
Synonyms-PKCE|nPKC-epsilon
Cytomap

19q13.2

2p21

Type of geneprotein-codingprotein-coding
Descriptioncoiled-coil domain-containing protein 97protein kinase C epsilon type
Modification date2018052320180523
UniProtAcc

Q96F63

Q02156

Ensembl transtripts involved in fusion geneENST00000269967, ENST00000306156, 
ENST00000467135, ENST00000394874, 
Fusion gene scores* DoF score4 X 3 X 3=368 X 9 X 4=288
# samples 410
** MAII scorelog2(4/36*10)=0.15200309344505
effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs).
DoF>8 and MAII>0
log2(10/288*10)=-1.52606881166759
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: CCDC97 [Title/Abstract] AND PRKCE [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
TgenePRKCE

GO:0006468

protein phosphorylation

18556656

TgenePRKCE

GO:0018105

peptidyl-serine phosphorylation

15695813


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChiTaRS3.1DQ464350CCDC97chr19

41818610

-PRKCEchr2

46312674

-
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
intron-intronENST00000269967ENST00000306156CCDC97chr19

41818610

-PRKCEchr2

46312674

-
intron-intronENST00000269967ENST00000467135CCDC97chr19

41818610

-PRKCEchr2

46312674

-
intron-intronENST00000269967ENST00000394874CCDC97chr19

41818610

-PRKCEchr2

46312674

-

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FusionProtFeatures for CCDC97_PRKCE


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
CCDC97

Q96F63

PRKCE

Q02156

Calcium-independent, phospholipid- and diacylglycerol(DAG)-dependent serine/threonine-protein kinase that playsessential roles in the regulation of multiple cellular processeslinked to cytoskeletal proteins, such as cell adhesion, motility,migration and cell cycle, functions in neuron growth and ionchannel regulation, and is involved in immune response, cancercell invasion and regulation of apoptosis. Mediates cell adhesionto the extracellular matrix via integrin-dependent signaling, bymediating angiotensin-2-induced activation of integrin beta-1(ITGB1) in cardiac fibroblasts. Phosphorylates MARCKS, whichphosphorylates and activates PTK2/FAK, leading to the spread ofcardiomyocytes. Involved in the control of the directionaltransport of ITGB1 in mesenchymal cells by phosphorylatingvimentin (VIM), an intermediate filament (IF) protein. Inepithelial cells, associates with and phosphorylates keratin-8(KRT8), which induces targeting of desmoplakin at desmosomes andregulates cell-cell contact. Phosphorylates IQGAP1, which binds toCDC42, mediating epithelial cell-cell detachment prior tomigration. In HeLa cells, contributes to hepatocyte growth factor(HGF)-induced cell migration, and in human corneal epithelialcells, plays a critical role in wound healing after activation byHGF. During cytokinesis, forms a complex with YWHAB, which iscrucial for daughter cell separation, and facilitates abscissionby a mechanism which may implicate the regulation of RHOA. Incardiac myocytes, regulates myofilament function and excitationcoupling at the Z-lines, where it is indirectly associated with F-actin via interaction with COPB1. During endothelin-inducedcardiomyocyte hypertrophy, mediates activation of PTK2/FAK, whichis critical for cardiomyocyte survival and regulation of sarcomerelength. Plays a role in the pathogenesis of dilated cardiomyopathyvia persistent phosphorylation of troponin I (TNNI3). Involved innerve growth factor (NFG)-induced neurite outgrowth and neuronmorphological change independently of its kinase activity, byinhibition of RHOA pathway, activation of CDC42 and cytoskeletalrearrangement. May be involved in presynaptic facilitation bymediating phorbol ester-induced synaptic potentiation.Phosphorylates gamma-aminobutyric acid receptor subunit gamma-2(GABRG2), which reduces the response of GABA receptors to ethanoland benzodiazepines and may mediate acute tolerance to theintoxicating effects of ethanol. Upon PMA treatment,phosphorylates the capsaicin- and heat-activated cation channelTRPV1, which is required for bradykinin-induced sensitization ofthe heat response in nociceptive neurons. Is able to form acomplex with PDLIM5 and N-type calcium channel, and may enhancechannel activities and potentiates fast synaptic transmission byphosphorylating the pore-forming alpha subunit CACNA1B (CaV2.2).In prostate cancer cells, interacts with and phosphorylates STAT3,which increases DNA-binding and transcriptional activity of STAT3and seems to be essential for prostate cancer cell invasion.Downstream of TLR4, plays an important role in thelipopolysaccharide (LPS)-induced immune response byphosphorylating and activating TICAM2/TRAM, which in turnactivates the transcription factor IRF3 and subsequent cytokinesproduction. In differentiating erythroid progenitors, is regulatedby EPO and controls the protection against the TNFSF10/TRAIL-mediated apoptosis, via BCL2. May be involved in the regulation ofthe insulin-induced phosphorylation and activation of AKT1.{ECO:0000269|PubMed:11884385, ECO:0000269|PubMed:1374067,ECO:0000269|PubMed:15355962, ECO:0000269|PubMed:16757566,ECO:0000269|PubMed:17603037, ECO:0000269|PubMed:17875639,ECO:0000269|PubMed:17875724}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for CCDC97_PRKCE


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for CCDC97_PRKCE


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for CCDC97_PRKCE


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for CCDC97_PRKCE


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
TgenePRKCEC0020429Hyperalgesia3CTD_human
TgenePRKCEC0009404Colorectal Neoplasms1CTD_human
TgenePRKCEC0011853Diabetes Mellitus, Experimental1CTD_human
TgenePRKCEC0011881Diabetic Nephropathy1CTD_human
TgenePRKCEC0023903Liver neoplasms1CTD_human
TgenePRKCEC0027051Myocardial Infarction1CTD_human
TgenePRKCEC0031117Peripheral Neuropathy1CTD_human
TgenePRKCEC0151744Myocardial Ischemia1CTD_human
TgenePRKCEC0236969Substance-Related Disorders1CTD_human
TgenePRKCEC0242231Coronary Stenosis1CTD_human
TgenePRKCEC0878544Cardiomyopathies1CTD_human