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Fusion gene ID: 5729 |
FusionGeneSummary for CBX8_ACTL6A |
Fusion gene summary |
Fusion gene information | Fusion gene name: CBX8_ACTL6A | Fusion gene ID: 5729 | Hgene | Tgene | Gene symbol | CBX8 | ACTL6A | Gene ID | 57332 | 86 |
Gene name | chromobox 8 | actin like 6A | |
Synonyms | PC3|RC1 | ACTL6|ARPN-BETA|Arp4|BAF53A|INO80K | |
Cytomap | 17q25.3 | 3q26.33 | |
Type of gene | protein-coding | protein-coding | |
Description | chromobox protein homolog 8Pc class 3 homologchromobox homolog 8 (Pc class homolog, Drosophila)polycomb 3rectachrome 1 | actin-like protein 6A53 kDa BRG1-associated factor ABAF complex 53 kDa subunitBAF53BRG1-associated factor 53AINO80 complex subunit Kactin-related protein 4actin-related protein Baf53aarpNbetahArpN beta | |
Modification date | 20180519 | 20180519 | |
UniProtAcc | Q9HC52 | O96019 | |
Ensembl transtripts involved in fusion gene | ENST00000269385, ENST00000485449, | ENST00000429709, ENST00000450518, ENST00000392662, ENST00000467615, | |
Fusion gene scores | * DoF score | 1 X 1 X 1=1 | 4 X 4 X 2=32 |
# samples | 1 | 4 | |
** MAII score | log2(1/1*10)=3.32192809488736 | log2(4/32*10)=0.321928094887362 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: CBX8 [Title/Abstract] AND ACTL6A [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | ACTL6A | GO:0006338 | chromatin remodeling | 11726552 |
Tgene | ACTL6A | GO:0043967 | histone H4 acetylation | 14966270 |
Tgene | ACTL6A | GO:0043968 | histone H2A acetylation | 14966270 |
Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | BRCA | TCGA-AQ-A04H-01B | CBX8 | chr17 | 77775200 | - | ACTL6A | chr3 | 179298682 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-3CDS | ENST00000269385 | ENST00000429709 | CBX8 | chr17 | 77775200 | - | ACTL6A | chr3 | 179298682 | + |
intron-3CDS | ENST00000269385 | ENST00000450518 | CBX8 | chr17 | 77775200 | - | ACTL6A | chr3 | 179298682 | + |
intron-3CDS | ENST00000269385 | ENST00000392662 | CBX8 | chr17 | 77775200 | - | ACTL6A | chr3 | 179298682 | + |
intron-3UTR | ENST00000269385 | ENST00000467615 | CBX8 | chr17 | 77775200 | - | ACTL6A | chr3 | 179298682 | + |
5UTR-3CDS | ENST00000485449 | ENST00000429709 | CBX8 | chr17 | 77775200 | - | ACTL6A | chr3 | 179298682 | + |
5UTR-3CDS | ENST00000485449 | ENST00000450518 | CBX8 | chr17 | 77775200 | - | ACTL6A | chr3 | 179298682 | + |
5UTR-3CDS | ENST00000485449 | ENST00000392662 | CBX8 | chr17 | 77775200 | - | ACTL6A | chr3 | 179298682 | + |
5UTR-3UTR | ENST00000485449 | ENST00000467615 | CBX8 | chr17 | 77775200 | - | ACTL6A | chr3 | 179298682 | + |
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FusionProtFeatures for CBX8_ACTL6A |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
CBX8 | ACTL6A |
Component of a Polycomb group (PcG) multiprotein PRC1-like complex, a complex class required to maintain thetranscriptionally repressive state of many genes, including Hoxgenes, throughout development. PcG PRC1 complex acts via chromatinremodeling and modification of histones; it mediatesmonoubiquitination of histone H2A 'Lys-119', rendering chromatinheritably changed in its expressibility.{ECO:0000269|PubMed:21282530}. | Involved in transcriptional activation and repression ofselect genes by chromatin remodeling (alteration of DNA-nucleosometopology). Component of SWI/SNF chromatin remodeling complexesthat carry out key enzymatic activities, changing chromatinstructure by altering DNA-histone contacts within a nucleosome inan ATP-dependent manner. Required for maximal ATPase activity ofSMARCA4/BRG1/BAF190A and for association of theSMARCA4/BRG1/BAF190A containing remodeling complex BAF withchromatin/nuclear matrix. Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and isrequired for the proliferation of neural progenitors. Duringneural development a switch from a stem/progenitor to apostmitotic chromatin remodeling mechanism occurs as neurons exitthe cell cycle and become committed to their adult state. Thetransition from proliferating neural stem/progenitor cells topostmitotic neurons requires a switch in subunit composition ofthe npBAF and nBAF complexes. As neural progenitors exit mitosisand differentiate into neurons, npBAF complexes which containACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologousalternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunitsin neuron-specific complexes (nBAF). The npBAF complex isessential for the self-renewal/proliferative capacity of themultipotent neural stem cells. The nBAF complex along with CRESTplays a role regulating the activity of genes essential fordendrite growth (By similarity). Component of the NuA4 histoneacetyltransferase (HAT) complex which is involved intranscriptional activation of select genes principally byacetylation of nucleosomal histones H4 and H2A. This modificationmay both alter nucleosome - DNA interactions and promoteinteraction of the modified histones with other proteins whichpositively regulate transcription. This complex may be requiredfor the activation of transcriptional programs associated withoncogene and proto-oncogene mediated growth induction, tumorsuppressor mediated growth arrest and replicative senescence,apoptosis, and DNA repair. NuA4 may also play a direct role in DNArepair when recruited to sites of DNA damage. Putative corecomponent of the chromatin remodeling INO80 complex which isinvolved in transcriptional regulation, DNA replication andprobably DNA repair. {ECO:0000250|UniProtKB:Q9Z2N8,ECO:0000269|PubMed:14966270, ECO:0000303|PubMed:15196461,ECO:0000303|PubMed:22952240, ECO:0000303|PubMed:26601204}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for CBX8_ACTL6A |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for CBX8_ACTL6A |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
CBX8 | RING1, HAP1, SETDB1, EEF1G, KAT5, KAT7, UNC119, MLLT1, PCGF2, BMI1, CENPA, USP7, USP11, CBX8, HIST3H3, RNF2, PHC1, PHC2, PHC3, CBX4, KMT2A, PAXIP1, BCLAF1, CSNK2A1, CSNK2B, YBX3, DGKZ, DIMT1, LIG3, EP300, ESCO2, FBL, GNB2L1, HIST1H2AB, HIST1H2BA, HIST4H4, IGF2BP1, IGF2BP2, IGF2BP3, ILF2, ILF3, SPAG9, LOC100131689, KRI1, KRR1, LTV1, NIFK, MOV10, KIF20B, NBN, MGEA5, NFIL3, GTPBP4, NOP2, NPM1, HMGN5, NCL, PCGF1, PCGF3, PCGF5, PCGF6, PDCD11, SETD2, PPAN, STAU1, ALYREF, TSR1, UBR1, YBX1, YTHDC2, ZCCHC3, ZFR, ZNF717, CHAMP1, GOLGA2, KIFC3, SOX5, TFCP2, TRAF2, ZBTB14, CALCOCO2, IKZF1, PNMA2, MID2, MTUS2, KCTD9, RPGRIP1, CCDC136, HMBOX1, TSGA10, LZTS2, GPRASP2, FSD2, KRT40, CCDC57, SUZ12, EED, HIST1H2BG, CENPB, E2F6, HIST1H1B, NUMA1, PSMB7, RPL10, RPL18A, RPL22, RPS3A, RPS6, RPS8, RPS12, RPS14, RPS20, H1FX, GTF3C4, SCML2, BAZ2A, ICE1, C10orf12, RSL1D1, H2BFS, EXOSC4, CHST12, ZC3HAV1, HNRNPU, DDX54, CMSS1, ESCO1, FTSJ3, CDC14B, SFTPC | ACTL6A | EWSR1, RELB, EP400, SMARCA4, SMARCB1, SMARCA2, MYC, RUVBL1, KAT2A, TRRAP, KAT5, SMARCE1, ARHGDIA, ING1, ING2, ING3, RUVBL2, BANF1, FLII, BCL7C, MRGBP, INO80, YY1, MORF4L1, MORF4L2, UBC, INO80E, H2AFZ, ACTR5, ACTR8, TFPT, INO80B, INO80C, INO80D, MCRS1, NFRKB, DMAP1, PBRM1, SMARCAD1, SOX2, HDGF, SMARCC2, SMARCD1, TP53, CDK2, CDK9, SMARCC1, CUL3, CAND1, UCHL5, GRB2, ARID1A, ARID1B, CBX5, HDAC2, FBXO6, HECW2, SHMT2, MOV10, NXF1, BMI1, DPF3, ZRANB2, DPF2, CYB5R3, RAB1B, PDCL, SF1, ETF1, TSFM, METAP2, SF3A1, RAB14, RPRD1B, MTDH, USO1, HDLBP, MAP2K2, RAP1BL, RIC8B, DDRGK1, CCT7, CCT3, HDGFRP2, CCT6B, CCT6A, CCT2, HINT1, TCP1, CCT4, SS18, HIST1H2BA, SMARCD2, SMARCD3, TBL1XR1, NTRK1, HIST1H3E, YEATS4, KIF7, TCF4, FOXN1, FOXO6, FOXR1, NFATC1, NFATC2, EPC1, MBTD1, FEN1, BCL7A, NCL, ZNHIT1, DLST, YAP1 |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for CBX8_ACTL6A |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for CBX8_ACTL6A |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |