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Fusion gene ID: 5700 |
FusionGeneSummary for CBR4_GALNTL6 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: CBR4_GALNTL6 | Fusion gene ID: 5700 | Hgene | Tgene | Gene symbol | CBR4 | GALNTL6 | Gene ID | 84869 | 442117 |
| Gene name | carbonyl reductase 4 | polypeptide N-acetylgalactosaminyltransferase like 6 | |
| Synonyms | SDR45C1 | GALNACT20|GALNT17|GalNAc-T6L | |
| Cytomap | 4q32.3 | 4q34.1 | |
| Type of gene | protein-coding | protein-coding | |
| Description | carbonyl reductase family member 43-ketoacyl-[acyl-carrier-protein] reductase beta subunit3-oxoacyl-[acyl-carrier-protein] reductaseKAR beta subunitcarbonic reductase 4quinone reductase CBR4short chain dehydrogenase/reductase family 45C member 1 | polypeptide N-acetylgalactosaminyltransferase-like 6GaNTase 17GalNAc transferase 17UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 17UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 20UDP-N-acetyl-alpha-D-gala | |
| Modification date | 20180522 | 20180523 | |
| UniProtAcc | Q8N4T8 | Q49A17 | |
| Ensembl transtripts involved in fusion gene | ENST00000509108, ENST00000306193, ENST00000504480, | ENST00000506823, ENST00000508122, ENST00000457021, ENST00000511251, | |
| Fusion gene scores | * DoF score | 3 X 2 X 3=18 | 7 X 5 X 7=245 |
| # samples | 3 | 7 | |
| ** MAII score | log2(3/18*10)=0.736965594166206 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(7/245*10)=-1.8073549220576 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: CBR4 [Title/Abstract] AND GALNTL6 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | CBR4 | GO:0051290 | protein heterotetramerization | 25203508 |
| Hgene | CBR4 | GO:0055114 | oxidation-reduction process | 25203508 |
| Tgene | GALNTL6 | GO:0018243 | protein O-linked glycosylation via threonine | 22186971 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | RV | SKCM | TCGA-ER-A2NF-01A | CBR4 | chr4 | 169923222 | - | GALNTL6 | chr4 | 173730512 | + |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| 5UTR-3CDS | ENST00000509108 | ENST00000506823 | CBR4 | chr4 | 169923222 | - | GALNTL6 | chr4 | 173730512 | + |
| 5UTR-3CDS | ENST00000509108 | ENST00000508122 | CBR4 | chr4 | 169923222 | - | GALNTL6 | chr4 | 173730512 | + |
| 5UTR-intron | ENST00000509108 | ENST00000457021 | CBR4 | chr4 | 169923222 | - | GALNTL6 | chr4 | 173730512 | + |
| 5UTR-intron | ENST00000509108 | ENST00000511251 | CBR4 | chr4 | 169923222 | - | GALNTL6 | chr4 | 173730512 | + |
| In-frame | ENST00000306193 | ENST00000506823 | CBR4 | chr4 | 169923222 | - | GALNTL6 | chr4 | 173730512 | + |
| In-frame | ENST00000306193 | ENST00000508122 | CBR4 | chr4 | 169923222 | - | GALNTL6 | chr4 | 173730512 | + |
| 5CDS-intron | ENST00000306193 | ENST00000457021 | CBR4 | chr4 | 169923222 | - | GALNTL6 | chr4 | 173730512 | + |
| 5CDS-intron | ENST00000306193 | ENST00000511251 | CBR4 | chr4 | 169923222 | - | GALNTL6 | chr4 | 173730512 | + |
| intron-3CDS | ENST00000504480 | ENST00000506823 | CBR4 | chr4 | 169923222 | - | GALNTL6 | chr4 | 173730512 | + |
| intron-3CDS | ENST00000504480 | ENST00000508122 | CBR4 | chr4 | 169923222 | - | GALNTL6 | chr4 | 173730512 | + |
| intron-intron | ENST00000504480 | ENST00000457021 | CBR4 | chr4 | 169923222 | - | GALNTL6 | chr4 | 173730512 | + |
| intron-intron | ENST00000504480 | ENST00000511251 | CBR4 | chr4 | 169923222 | - | GALNTL6 | chr4 | 173730512 | + |
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FusionProtFeatures for CBR4_GALNTL6 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| CBR4 | GALNTL6 |
| The heterotetramer with HSD17B8 has NADH-dependent 3-ketoacyl-acyl carrier protein reductase activity, and therebyplays a role in mitochondrial fatty acid biosynthesis(PubMed:19571038, PubMed:25203508). Within the heterotetramer,HSD17B8 binds NADH; CBR4 binds NADPD (PubMed:25203508). Thehomotetramer has NADPH-dependent quinone reductase activity(PubMed:19000905). Both homotetramer and the heterotetramer havebroad substrate specificity and can reduce 9,10-phenanthrenequinone, 1,4-benzoquinone and various other o-quinonesand p-quinones (in vitro) (PubMed:19000905, PubMed:19571038,PubMed:25203508). {ECO:0000269|PubMed:19000905,ECO:0000269|PubMed:19571038, ECO:0000269|PubMed:25203508}. | Catalyzes the initial reaction in O-linkedoligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on theprotein receptor. {ECO:0000250}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for CBR4_GALNTL6 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| >In-frame_CBR4_ENST00000306193_chr4_169923222_-_GALNTL6_ENST00000506823_chr4_173730512_+_596aa MDKVCAVFGGSRGIGRAVAQLMARKGYRLAVIARNLEGAKAAAGDLGGDHLAFSCDVAKEHDVQNTFEELEKHLGRVNFLVNAAGINRDG LLVRTKTEDMVSQLHTNLLGSMLTCKAAMRTMIQQQGGSIVNVGSIVGLKGNSGQSVYSASKGGLVGFSRALAKEVARKKIRVNVVAPEH LKDKLEEYMARFSKVRIVRTKKREGLIRTRLLGASMARGEVLTFLDSHCEVNVNWLPPLLNQIALNHKTIVCPMIDVIDHNHFGYEAQAG DAMRGAFDWEMYYKRIPIPPELQRADPSDPFESPVMAGGLFAVDRKWFWELGGYDPGLEIWGGEQYEISFKVWMCGGEMFDVPCSRVGHI YRKYVPYKVPSGTSLARNLKRVAETWMDEFAEYIYQRRPEYRHLSTGDISAQKELRKQLKCKDFKWFMAAVAWDVPKYYPPVEPPPAAWG EIRNVAANLCVDSKHGATGTELRLDICVKDGSERTWSHEQLFTFGWREDIRPGEPLHTRKFCFDAISHNSPVTLYDCHGMKGNQLWGYRK >In-frame_CBR4_ENST00000306193_chr4_169923222_-_GALNTL6_ENST00000508122_chr4_173730512_+_596aa MDKVCAVFGGSRGIGRAVAQLMARKGYRLAVIARNLEGAKAAAGDLGGDHLAFSCDVAKEHDVQNTFEELEKHLGRVNFLVNAAGINRDG LLVRTKTEDMVSQLHTNLLGSMLTCKAAMRTMIQQQGGSIVNVGSIVGLKGNSGQSVYSASKGGLVGFSRALAKEVARKKIRVNVVAPEH LKDKLEEYMARFSKVRIVRTKKREGLIRTRLLGASMARGEVLTFLDSHCEVNVNWLPPLLNQIALNHKTIVCPMIDVIDHNHFGYEAQAG DAMRGAFDWEMYYKRIPIPPELQRADPSDPFESPVMAGGLFAVDRKWFWELGGYDPGLEIWGGEQYEISFKVWMCGGEMFDVPCSRVGHI YRKYVPYKVPSGTSLARNLKRVAETWMDEFAEYIYQRRPEYRHLSTGDISAQKELRKQLKCKDFKWFMAAVAWDVPKYYPPVEPPPAAWG EIRNVAANLCVDSKHGATGTELRLDICVKDGSERTWSHEQLFTFGWREDIRPGEPLHTRKFCFDAISHNSPVTLYDCHGMKGNQLWGYRK |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| >In-frame_CBR4_ENST00000306193_chr4_169923222_-_GALNTL6_ENST00000506823_chr4_173730512_+_1788nt ATGGACAAAGTGTGTGCTGTTTTTGGAGGCTCCCGAGGCATTGGCAGAGCTGTGGCCCAGTTAATGGCCCGGAAAGGCTACCGACTGGCG GTCATTGCCAGAAACCTGGAAGGGGCCAAAGCCGCCGCCGGTGACCTCGGCGGAGATCATTTGGCATTTAGCTGTGATGTTGCTAAAGAA CATGATGTTCAAAATACATTTGAAGAGCTGGAGAAACATTTAGGTCGAGTAAATTTCTTGGTAAATGCAGCTGGTATTAACAGGGATGGT CTTTTAGTAAGAACAAAAACTGAAGATATGGTATCTCAGCTTCATACTAACCTCTTGGGTTCCATGCTGACCTGTAAAGCTGCCATGAGG ACTATGATTCAACAACAGGGAGGGTCTATTGTTAATGTAGGAAGCATTGTTGGCTTAAAAGGCAACTCTGGCCAGTCCGTTTACAGTGCC AGTAAAGGAGGATTAGTTGGATTTTCACGTGCTCTTGCTAAAGAGGTAGCAAGAAAGAAAATTAGAGTGAATGTAGTTGCACCAGAACAC CTGAAGGATAAATTGGAAGAATACATGGCCCGATTTTCCAAAGTGAGGATTGTTCGCACCAAGAAAAGAGAAGGACTCATCCGGACCCGT CTCCTGGGGGCATCTATGGCCAGAGGAGAAGTCCTGACATTCCTGGACTCCCACTGCGAGGTCAATGTGAACTGGCTGCCCCCACTCCTC AACCAAATTGCACTAAACCACAAAACCATCGTGTGTCCCATGATCGATGTCATTGACCACAATCACTTCGGGTATGAGGCACAAGCTGGG GATGCCATGCGAGGAGCCTTCGACTGGGAAATGTACTACAAAAGAATCCCCATCCCTCCAGAGCTCCAGAGGGCAGATCCCAGCGACCCT TTTGAGTCTCCTGTTATGGCTGGAGGTCTCTTTGCTGTGGATCGGAAATGGTTTTGGGAATTGGGTGGCTATGATCCAGGTTTAGAAATC TGGGGAGGAGAACAGTATGAAATCTCTTTTAAGGTTTGGATGTGTGGAGGAGAAATGTTTGATGTTCCATGTTCTAGAGTTGGTCATATC TACAGGAAGTACGTTCCATACAAAGTTCCATCTGGGACAAGCCTGGCAAGAAACCTGAAGCGGGTAGCTGAGACCTGGATGGATGAATTT GCCGAGTACATTTACCAGCGGCGGCCGGAGTACAGGCATCTCTCCACGGGGGACATCTCTGCCCAGAAGGAGCTGCGCAAGCAGCTCAAG TGCAAGGACTTCAAATGGTTCATGGCTGCTGTGGCCTGGGACGTGCCTAAATACTACCCTCCAGTGGAGCCCCCGCCTGCTGCCTGGGGG GAGATCCGAAATGTGGCAGCAAATCTCTGTGTGGACAGCAAGCATGGAGCCACCGGAACAGAGCTGAGGCTGGACATCTGTGTCAAGGAT GGTTCTGAAAGAACATGGTCTCATGAACAGCTTTTTACCTTTGGATGGAGAGAAGATATTCGACCCGGTGAGCCACTGCATACCCGGAAA TTCTGCTTTGATGCGATCTCACACAACAGCCCCGTTACACTCTATGACTGTCATGGCATGAAGGGGAACCAGCTCTGGGGATACCGGAAG GACAGAACATTATTCCATCCTGTGAGCAACAGCTGCATGGATTGCAACCCCGCAGAGAAGAAGATTTTCATGGCCAGATGTGACCCTCTC >In-frame_CBR4_ENST00000306193_chr4_169923222_-_GALNTL6_ENST00000508122_chr4_173730512_+_1788nt ATGGACAAAGTGTGTGCTGTTTTTGGAGGCTCCCGAGGCATTGGCAGAGCTGTGGCCCAGTTAATGGCCCGGAAAGGCTACCGACTGGCG GTCATTGCCAGAAACCTGGAAGGGGCCAAAGCCGCCGCCGGTGACCTCGGCGGAGATCATTTGGCATTTAGCTGTGATGTTGCTAAAGAA CATGATGTTCAAAATACATTTGAAGAGCTGGAGAAACATTTAGGTCGAGTAAATTTCTTGGTAAATGCAGCTGGTATTAACAGGGATGGT CTTTTAGTAAGAACAAAAACTGAAGATATGGTATCTCAGCTTCATACTAACCTCTTGGGTTCCATGCTGACCTGTAAAGCTGCCATGAGG ACTATGATTCAACAACAGGGAGGGTCTATTGTTAATGTAGGAAGCATTGTTGGCTTAAAAGGCAACTCTGGCCAGTCCGTTTACAGTGCC AGTAAAGGAGGATTAGTTGGATTTTCACGTGCTCTTGCTAAAGAGGTAGCAAGAAAGAAAATTAGAGTGAATGTAGTTGCACCAGAACAC CTGAAGGATAAATTGGAAGAATACATGGCCCGATTTTCCAAAGTGAGGATTGTTCGCACCAAGAAAAGAGAAGGACTCATCCGGACCCGT CTCCTGGGGGCATCTATGGCCAGAGGAGAAGTCCTGACATTCCTGGACTCCCACTGCGAGGTCAATGTGAACTGGCTGCCCCCACTCCTC AACCAAATTGCACTAAACCACAAAACCATCGTGTGTCCCATGATCGATGTCATTGACCACAATCACTTCGGGTATGAGGCACAAGCTGGG GATGCCATGCGAGGAGCCTTCGACTGGGAAATGTACTACAAAAGAATCCCCATCCCTCCAGAGCTCCAGAGGGCAGATCCCAGCGACCCT TTTGAGTCTCCTGTTATGGCTGGAGGTCTCTTTGCTGTGGATCGGAAATGGTTTTGGGAATTGGGTGGCTATGATCCAGGTTTAGAAATC TGGGGAGGAGAACAGTATGAAATCTCTTTTAAGGTTTGGATGTGTGGAGGAGAAATGTTTGATGTTCCATGTTCTAGAGTTGGTCATATC TACAGGAAGTACGTTCCATACAAAGTTCCATCTGGGACAAGCCTGGCAAGAAACCTGAAGCGGGTAGCTGAGACCTGGATGGATGAATTT GCCGAGTACATTTACCAGCGGCGGCCGGAGTACAGGCATCTCTCCACGGGGGACATCTCTGCCCAGAAGGAGCTGCGCAAGCAGCTCAAG TGCAAGGACTTCAAATGGTTCATGGCTGCTGTGGCCTGGGACGTGCCTAAATACTACCCTCCAGTGGAGCCCCCGCCTGCTGCCTGGGGG GAGATCCGAAATGTGGCAGCAAATCTCTGTGTGGACAGCAAGCATGGAGCCACCGGAACAGAGCTGAGGCTGGACATCTGTGTCAAGGAT GGTTCTGAAAGAACATGGTCTCATGAACAGCTTTTTACCTTTGGATGGAGAGAAGATATTCGACCCGGTGAGCCACTGCATACCCGGAAA TTCTGCTTTGATGCGATCTCACACAACAGCCCCGTTACACTCTATGACTGTCATGGCATGAAGGGGAACCAGCTCTGGGGATACCGGAAG GACAGAACATTATTCCATCCTGTGAGCAACAGCTGCATGGATTGCAACCCCGCAGAGAAGAAGATTTTCATGGCCAGATGTGACCCTCTC |
| * Fusion transcript sequences (Full-length transcript). |
| >In-frame_CBR4_ENST00000306193_chr4_169923222_-_GALNTL6_ENST00000506823_chr4_173730512_+_3416nt ATTACTATTGTGCGGCTGCAGGAGGTGTCGAGCGGCGTTATTTTTTTTTGCGGTTTGCCTTTTTTTTTCTTTTTTTTTTTTTTGGAACCG CGGTTGTTTAAAAGCCTGAGGGAACCTGGAGAGGGGCTCCCACTCCCTACCCTCTTTCCTCCGAGTTTGTGACTCCGAGATGGACAAAGT GTGTGCTGTTTTTGGAGGCTCCCGAGGCATTGGCAGAGCTGTGGCCCAGTTAATGGCCCGGAAAGGCTACCGACTGGCGGTCATTGCCAG AAACCTGGAAGGGGCCAAAGCCGCCGCCGGTGACCTCGGCGGAGATCATTTGGCATTTAGCTGTGATGTTGCTAAAGAACATGATGTTCA AAATACATTTGAAGAGCTGGAGAAACATTTAGGTCGAGTAAATTTCTTGGTAAATGCAGCTGGTATTAACAGGGATGGTCTTTTAGTAAG AACAAAAACTGAAGATATGGTATCTCAGCTTCATACTAACCTCTTGGGTTCCATGCTGACCTGTAAAGCTGCCATGAGGACTATGATTCA ACAACAGGGAGGGTCTATTGTTAATGTAGGAAGCATTGTTGGCTTAAAAGGCAACTCTGGCCAGTCCGTTTACAGTGCCAGTAAAGGAGG ATTAGTTGGATTTTCACGTGCTCTTGCTAAAGAGGTAGCAAGAAAGAAAATTAGAGTGAATGTAGTTGCACCAGAACACCTGAAGGATAA ATTGGAAGAATACATGGCCCGATTTTCCAAAGTGAGGATTGTTCGCACCAAGAAAAGAGAAGGACTCATCCGGACCCGTCTCCTGGGGGC ATCTATGGCCAGAGGAGAAGTCCTGACATTCCTGGACTCCCACTGCGAGGTCAATGTGAACTGGCTGCCCCCACTCCTCAACCAAATTGC ACTAAACCACAAAACCATCGTGTGTCCCATGATCGATGTCATTGACCACAATCACTTCGGGTATGAGGCACAAGCTGGGGATGCCATGCG AGGAGCCTTCGACTGGGAAATGTACTACAAAAGAATCCCCATCCCTCCAGAGCTCCAGAGGGCAGATCCCAGCGACCCTTTTGAGTCTCC TGTTATGGCTGGAGGTCTCTTTGCTGTGGATCGGAAATGGTTTTGGGAATTGGGTGGCTATGATCCAGGTTTAGAAATCTGGGGAGGAGA ACAGTATGAAATCTCTTTTAAGGTTTGGATGTGTGGAGGAGAAATGTTTGATGTTCCATGTTCTAGAGTTGGTCATATCTACAGGAAGTA CGTTCCATACAAAGTTCCATCTGGGACAAGCCTGGCAAGAAACCTGAAGCGGGTAGCTGAGACCTGGATGGATGAATTTGCCGAGTACAT TTACCAGCGGCGGCCGGAGTACAGGCATCTCTCCACGGGGGACATCTCTGCCCAGAAGGAGCTGCGCAAGCAGCTCAAGTGCAAGGACTT CAAATGGTTCATGGCTGCTGTGGCCTGGGACGTGCCTAAATACTACCCTCCAGTGGAGCCCCCGCCTGCTGCCTGGGGGGAGATCCGAAA TGTGGCAGCAAATCTCTGTGTGGACAGCAAGCATGGAGCCACCGGAACAGAGCTGAGGCTGGACATCTGTGTCAAGGATGGTTCTGAAAG AACATGGTCTCATGAACAGCTTTTTACCTTTGGATGGAGAGAAGATATTCGACCCGGTGAGCCACTGCATACCCGGAAATTCTGCTTTGA TGCGATCTCACACAACAGCCCCGTTACACTCTATGACTGTCATGGCATGAAGGGGAACCAGCTCTGGGGATACCGGAAGGACAGAACATT ATTCCATCCTGTGAGCAACAGCTGCATGGATTGCAACCCCGCAGAGAAGAAGATTTTCATGGCCAGATGTGACCCTCTCTCTGAGACTCA GCAGTGGATTTTTGAACACATTAATATGACTGTTTTAGAAAAATTTAACCACCATGCCAACTCCTAGAAAGAAGAAAGGAAGAAAGAGTG ATTACCTACAGGTTATAAATTAAATTTTAGCCAGCATCTGGGTCGAAGGAGTCAGGAATAACATTTCCTCGATCCAGGAAGGCTGGTTTA AAAATTTGCAAATGCCATGTCAAAGTAGGTTGTTTTGAAGAACTTCCTGCATCTGAAGAACTTGGCTGAGAATCTCACCAGCTGCTTCTG AGAACTCGAGACTAGCAGTTCCCTTGCTGGCCAAGGGCAAAGATAATTTAGGGACTTTTCAAAACAACTGCTGAGCTAATAAATCCTAGC ATTTCTCAGGTCAAATCCTGCAGTAGTGAGTAGCTATGAATGGATCCTATTAACTGGGTGGGAGGGGGGTGAAAATGGAGTGCATGACTG CTCTGACAACCTGAGGATATCACAGGTTTAGAACTAGCCAAGCTTAAGGGGTGAGCTGTACTCTTTGGTGCCATTCTCTGACTAAGAATG GGTTCAGCAGGTTTAACCCTTAAAAGTGCTGCAGATGATTTCAGAGTGCTCACACTATTCTGTTTTTTTTATTTTTATTTTTAAATGAGG GTGCAATATCTAATGTAAGACTTAAATTACATAATGAAATGGACATCCAGTGTTCCCATTCTTTCGTTTATATTTGCCATTTTTTTTTCA GAGCAAAGTTTCTTTTTTATGAAAGTTCATGCTCCATGAATCCACTGAATTTCTAATTCAGTGCCCTTCTATGAATCCAGTTAAAAACAA AAGCAAAAGCAAAAATCTATGCTATCAAGTTACTCCAAAGAAAGATTTCACAGAAGCAGCAAAACCATATAAGATTTAGGAGAGGGACTT CCCTGGGAAATCTATTTTTACTTTTCTATTATTTTTAAAATCTTAAAAGTCTGATATTTGTCCAGTCATAATTTTTATTAAGCAAGGAAA TGGAGTGAGTTTGATGTAATTTGTTTAGGAGATTCTTAAACCCAAATAAATCTACACTCCAAGTGATATGTGAAAATGGCTTAGTTCACT TCAATTCTGTTTAGTCAGTGGTGGGAGCTTAGAAGTGGTTTTATTTGTTCGTTTGTTTGGGTTTTGCTTTTGTTTTTTATTTTTTTCTTG TTTTTTTTTTGTAGTGTTGAATTAATGATGTTCTTTTATTTGGAAGCTCATAAAAGGAATTACCATTAATAAAGTGTTTCTGACACCATT TTCTGTTAATGGGACAATATTTCGGGGATGAAGAAAGGAATGCTCCGAAAACTAAATGGAACACTTAATCCTTAAAGCAATTTTTTACTG TTCAATAATATCACATTGGGGGAAGAAAACACAGGTATCAAGGTGGTTCTTGGGAAAAAAGAATCATGTTTATTATATATCTCTCAAGTT >In-frame_CBR4_ENST00000306193_chr4_169923222_-_GALNTL6_ENST00000508122_chr4_173730512_+_1957nt ATTACTATTGTGCGGCTGCAGGAGGTGTCGAGCGGCGTTATTTTTTTTTGCGGTTTGCCTTTTTTTTTCTTTTTTTTTTTTTTGGAACCG CGGTTGTTTAAAAGCCTGAGGGAACCTGGAGAGGGGCTCCCACTCCCTACCCTCTTTCCTCCGAGTTTGTGACTCCGAGATGGACAAAGT GTGTGCTGTTTTTGGAGGCTCCCGAGGCATTGGCAGAGCTGTGGCCCAGTTAATGGCCCGGAAAGGCTACCGACTGGCGGTCATTGCCAG AAACCTGGAAGGGGCCAAAGCCGCCGCCGGTGACCTCGGCGGAGATCATTTGGCATTTAGCTGTGATGTTGCTAAAGAACATGATGTTCA AAATACATTTGAAGAGCTGGAGAAACATTTAGGTCGAGTAAATTTCTTGGTAAATGCAGCTGGTATTAACAGGGATGGTCTTTTAGTAAG AACAAAAACTGAAGATATGGTATCTCAGCTTCATACTAACCTCTTGGGTTCCATGCTGACCTGTAAAGCTGCCATGAGGACTATGATTCA ACAACAGGGAGGGTCTATTGTTAATGTAGGAAGCATTGTTGGCTTAAAAGGCAACTCTGGCCAGTCCGTTTACAGTGCCAGTAAAGGAGG ATTAGTTGGATTTTCACGTGCTCTTGCTAAAGAGGTAGCAAGAAAGAAAATTAGAGTGAATGTAGTTGCACCAGAACACCTGAAGGATAA ATTGGAAGAATACATGGCCCGATTTTCCAAAGTGAGGATTGTTCGCACCAAGAAAAGAGAAGGACTCATCCGGACCCGTCTCCTGGGGGC ATCTATGGCCAGAGGAGAAGTCCTGACATTCCTGGACTCCCACTGCGAGGTCAATGTGAACTGGCTGCCCCCACTCCTCAACCAAATTGC ACTAAACCACAAAACCATCGTGTGTCCCATGATCGATGTCATTGACCACAATCACTTCGGGTATGAGGCACAAGCTGGGGATGCCATGCG AGGAGCCTTCGACTGGGAAATGTACTACAAAAGAATCCCCATCCCTCCAGAGCTCCAGAGGGCAGATCCCAGCGACCCTTTTGAGTCTCC TGTTATGGCTGGAGGTCTCTTTGCTGTGGATCGGAAATGGTTTTGGGAATTGGGTGGCTATGATCCAGGTTTAGAAATCTGGGGAGGAGA ACAGTATGAAATCTCTTTTAAGGTTTGGATGTGTGGAGGAGAAATGTTTGATGTTCCATGTTCTAGAGTTGGTCATATCTACAGGAAGTA CGTTCCATACAAAGTTCCATCTGGGACAAGCCTGGCAAGAAACCTGAAGCGGGTAGCTGAGACCTGGATGGATGAATTTGCCGAGTACAT TTACCAGCGGCGGCCGGAGTACAGGCATCTCTCCACGGGGGACATCTCTGCCCAGAAGGAGCTGCGCAAGCAGCTCAAGTGCAAGGACTT CAAATGGTTCATGGCTGCTGTGGCCTGGGACGTGCCTAAATACTACCCTCCAGTGGAGCCCCCGCCTGCTGCCTGGGGGGAGATCCGAAA TGTGGCAGCAAATCTCTGTGTGGACAGCAAGCATGGAGCCACCGGAACAGAGCTGAGGCTGGACATCTGTGTCAAGGATGGTTCTGAAAG AACATGGTCTCATGAACAGCTTTTTACCTTTGGATGGAGAGAAGATATTCGACCCGGTGAGCCACTGCATACCCGGAAATTCTGCTTTGA TGCGATCTCACACAACAGCCCCGTTACACTCTATGACTGTCATGGCATGAAGGGGAACCAGCTCTGGGGATACCGGAAGGACAGAACATT ATTCCATCCTGTGAGCAACAGCTGCATGGATTGCAACCCCGCAGAGAAGAAGATTTTCATGGCCAGATGTGACCCTCTCTCTGAGACTCA |
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FusionGenePPI for CBR4_GALNTL6 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| CBR4 | ELAVL1, HSD17B8, SEPT3, NF2, TRIM25 | GALNTL6 |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for CBR4_GALNTL6 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for CBR4_GALNTL6 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
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