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Fusion gene ID: 5109 |
FusionGeneSummary for C9orf3_HIATL1 |
Fusion gene summary |
Fusion gene information | Fusion gene name: C9orf3_HIATL1 | Fusion gene ID: 5109 | Hgene | Tgene | Gene symbol | C9orf3 | HIATL1 | Gene ID | 84909 | 84641 |
Gene name | chromosome 9 open reading frame 3 | major facilitator superfamily domain containing 14B | |
Synonyms | AOPEP|AP-O|APO|C90RF3|ONPEP | HIATL1 | |
Cytomap | 9q22.32 | 9q22.32 | |
Type of gene | protein-coding | protein-coding | |
Description | aminopeptidase O | hippocampus abundant transcript-like protein 1hippocampus abundant transcript-like 1 | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | |||
Ensembl transtripts involved in fusion gene | ENST00000277198, ENST00000297979, ENST00000375315, ENST00000395357, ENST00000425634, ENST00000433691, ENST00000473778, | ENST00000375344, ENST00000428393, | |
Fusion gene scores | * DoF score | 12 X 11 X 7=924 | 1 X 1 X 1=1 |
# samples | 12 | 1 | |
** MAII score | log2(12/924*10)=-2.94485844580754 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(1/1*10)=3.32192809488736 | |
Context | PubMed: C9orf3 [Title/Abstract] AND HIATL1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | C9orf3 | GO:0006508 | proteolysis | 15687497 |
Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | STAD | TCGA-VQ-A925-01A | C9orf3 | chr9 | 97741709 | + | HIATL1 | chr9 | 97177440 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-3CDS | ENST00000277198 | ENST00000375344 | C9orf3 | chr9 | 97741709 | + | HIATL1 | chr9 | 97177440 | + |
intron-intron | ENST00000277198 | ENST00000428393 | C9orf3 | chr9 | 97741709 | + | HIATL1 | chr9 | 97177440 | + |
In-frame | ENST00000297979 | ENST00000375344 | C9orf3 | chr9 | 97741709 | + | HIATL1 | chr9 | 97177440 | + |
5CDS-intron | ENST00000297979 | ENST00000428393 | C9orf3 | chr9 | 97741709 | + | HIATL1 | chr9 | 97177440 | + |
In-frame | ENST00000375315 | ENST00000375344 | C9orf3 | chr9 | 97741709 | + | HIATL1 | chr9 | 97177440 | + |
5CDS-intron | ENST00000375315 | ENST00000428393 | C9orf3 | chr9 | 97741709 | + | HIATL1 | chr9 | 97177440 | + |
intron-3CDS | ENST00000395357 | ENST00000375344 | C9orf3 | chr9 | 97741709 | + | HIATL1 | chr9 | 97177440 | + |
intron-intron | ENST00000395357 | ENST00000428393 | C9orf3 | chr9 | 97741709 | + | HIATL1 | chr9 | 97177440 | + |
intron-3CDS | ENST00000425634 | ENST00000375344 | C9orf3 | chr9 | 97741709 | + | HIATL1 | chr9 | 97177440 | + |
intron-intron | ENST00000425634 | ENST00000428393 | C9orf3 | chr9 | 97741709 | + | HIATL1 | chr9 | 97177440 | + |
intron-3CDS | ENST00000433691 | ENST00000375344 | C9orf3 | chr9 | 97741709 | + | HIATL1 | chr9 | 97177440 | + |
intron-intron | ENST00000433691 | ENST00000428393 | C9orf3 | chr9 | 97741709 | + | HIATL1 | chr9 | 97177440 | + |
intron-3CDS | ENST00000473778 | ENST00000375344 | C9orf3 | chr9 | 97741709 | + | HIATL1 | chr9 | 97177440 | + |
intron-intron | ENST00000473778 | ENST00000428393 | C9orf3 | chr9 | 97741709 | + | HIATL1 | chr9 | 97177440 | + |
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FusionProtFeatures for C9orf3_HIATL1 |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
C9orf3 | HIATL1 |
Lectin that binds to various sugars: galactose > mannose= fucose > N-acetylglucosamine > N-acetylgalactosamine(PubMed:10224141). Acts as a chemoattractant, probably involved inthe regulation of cell migration (PubMed:28301481).{ECO:0000269|PubMed:10224141, ECO:0000269|PubMed:28301481}. | Lectin that binds to various sugars: galactose > mannose= fucose > N-acetylglucosamine > N-acetylgalactosamine(PubMed:10224141). Acts as a chemoattractant, probably involved inthe regulation of cell migration (PubMed:28301481).{ECO:0000269|PubMed:10224141, ECO:0000269|PubMed:28301481}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for C9orf3_HIATL1 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_C9orf3_ENST00000297979_chr9_97741709_+_HIATL1_ENST00000375344_chr9_97177440_+_1031aa MDIQLDPARDDLPLMANTSHILVKHYVLDLDVDFESQVIEGTIVLFLEDGNRFKKQNSSIEEACQSESNKACKFGMPEPCHIPVTNARTF SSEMEYNDFAICSKGEKDTSDKDGNHDNQEHASGISSSKYCCDTGNHGSEDFLLVLDCCDLSVLKVEEVDVAAVPGLEKFTRSPELTVVS EEFRNQIVRELVTLPANRWREQLDYYARCSQAPGCGELLFDTDTWSLQIRKTGAQTATDFPHAIRIWYKTKPEGRSVTWTSDQSGRPCVY TVGSPINNRALFPCQEPPVAMSTWQATVRAAASFVVLMSGENSAKPTQLWEECSSWYYYVTMPMPASTFTIAVGCWTEMKMETWSSNDLA TERPFSPSEANFRHVGVCSHMEYPCRFQNASATTQEIIPHRVFAPVCLTGACQETLLRLIPPCLSAAHSVLGAHPFSRLDVLIVPANFPS LGMARPSKDKTGHTSDSGASVIKHGLNPEKIFMQVHYLKGYFLLRFLAKRLGDETYFSFLRKFVHTFHGQLILSQDFLQMLLENIPEEKR LELSVENIYQDWLESSGIPKLQGFGRPSVYHAAIVIFLEFFAWGLLTTPMLTVLHETFSQHTFLMNGLIQGVKGLLSFLSAPLIGALSDV WGRKPFLLGTVFFTCFPIPLMRISPWWYFAMISVSGVFSVTFSVIFAYVADVTQEHERSTAYGWVSATFAASLVSSPAIGAYLSASYGDS LVVLVATVVALLDICFILVAVPESLPEKMRPVSWGAQISWKQADPFASLKKVGKDSTVLLICITVFLSYLPEAGQYSSFFLYLRQVIGFG SVKIAAFIAMVGILSIVAQTAFLSILMRSLGNKNTVLLGLGFQMLQLAWYGFGSQAWMMWAAGTVAAMSSITFPAISALVSRNAESDQQG VAQGIITGIRGLCNGLGPALYGFIFYMFHVELTELGPKLNSNNVPLQGAVIPGPPFLFGACIVLMSFLVALFIPEYSKASGVQKHSNSSS >In-frame_C9orf3_ENST00000375315_chr9_97741709_+_HIATL1_ENST00000375344_chr9_97177440_+_1130aa MDIQLDPARDDLPLMANTSHILVKHYVLDLDVDFESQVIEGTIVLFLEDGNRFKKQNSSIEEACQSESNKACKFGMPEPCHIPVTNARTF SSEMEYNDFAICSKGEKDTSDKDGNHDNQEHASGISSSKYCCDTGNHGSEDFLLVLDCCDLSVLKVEEVDVAAVPGLEKFTRSPELTVVS EEFRNQIVRELVTLPANRWREQLDYYARCSQAPGCGELLFDTDTWSLQIRKTGAQTATDFPHAIRIWYKTKPEGRSVTWTSDQSGRPCVY TVGSPINNRALFPCQEPPVAMSTWQATVRAAASFVVLMSGENSAKPTQLWEECSSWYYYVTMPMPASTFTIAVGCWTEMKMETWSSNDLA TERPFSPSEANFRHVGVCSHMEYPCRFQNASATTQEIIPHRVFAPVCLTGACQETLLRLIPPCLSAAHSVLGAHPFSRLDVLIVPANFPS LGMASPHIMFLSQSILTGGNHLCGTRLCHEIAHAWFGLAIGARDWTEEWLSEGFATHLEDVFWATAQQLAPYEAREQQELRACLRWRRLQ DEMQCSPEEMQVLRPSKDKTGHTSDSGASVIKHGLNPEKIFMQVHYLKGYFLLRFLAKRLGDETYFSFLRKFVHTFHGQLILSQDFLQML LENIPEEKRLELSVENIYQDWLESSGIPKLQGFGRPSVYHAAIVIFLEFFAWGLLTTPMLTVLHETFSQHTFLMNGLIQGVKGLLSFLSA PLIGALSDVWGRKPFLLGTVFFTCFPIPLMRISPWWYFAMISVSGVFSVTFSVIFAYVADVTQEHERSTAYGWVSATFAASLVSSPAIGA YLSASYGDSLVVLVATVVALLDICFILVAVPESLPEKMRPVSWGAQISWKQADPFASLKKVGKDSTVLLICITVFLSYLPEAGQYSSFFL YLRQVIGFGSVKIAAFIAMVGILSIVAQTAFLSILMRSLGNKNTVLLGLGFQMLQLAWYGFGSQAWMMWAAGTVAAMSSITFPAISALVS RNAESDQQGVAQGIITGIRGLCNGLGPALYGFIFYMFHVELTELGPKLNSNNVPLQGAVIPGPPFLFGACIVLMSFLVALFIPEYSKASG |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_C9orf3_ENST00000297979_chr9_97741709_+_HIATL1_ENST00000375344_chr9_97177440_+_3093nt ATGGACATACAGCTGGACCCTGCCAGAGATGACCTGCCTCTCATGGCCAACACCAGCCACATACTTGTGAAGCACTATGTACTGGATTTG GATGTGGATTTTGAAAGTCAAGTCATTGAGGGGACCATAGTGCTTTTCCTCGAGGATGGAAACAGATTCAAGAAACAGAATAGCTCTATT GAGGAAGCCTGCCAATCAGAATCAAACAAAGCCTGCAAATTTGGGATGCCTGAACCCTGCCATATTCCCGTGACAAATGCAAGGACCTTC TCATCTGAAATGGAATATAATGATTTTGCAATCTGTAGTAAAGGTGAAAAAGATACTTCTGATAAAGATGGTAACCATGACAACCAGGAA CATGCTTCTGGGATTTCTAGCTCAAAGTACTGCTGTGACACAGGGAATCATGGGAGTGAGGATTTTTTGCTAGTGTTGGACTGCTGTGAT TTATCTGTGTTAAAAGTCGAGGAGGTGGATGTTGCTGCTGTGCCAGGTCTGGAAAAATTTACAAGGTCTCCTGAGCTCACGGTTGTTTCT GAGGAGTTCAGGAATCAGATTGTACGTGAACTTGTGACTTTGCCTGCAAATCGTTGGAGGGAGCAGTTAGACTATTACGCTCGCTGCAGC CAGGCTCCTGGCTGTGGGGAACTCCTCTTTGACACTGACACTTGGAGCTTGCAGATAAGGAAGACAGGGGCTCAGACAGCTACTGACTTT CCTCATGCTATCAGGATATGGTACAAAACTAAACCTGAAGGGCGATCGGTTACATGGACCTCAGACCAGAGTGGCAGGCCATGTGTTTAT ACTGTGGGATCTCCCATAAACAACAGGGCCCTTTTTCCATGCCAGGAGCCACCCGTTGCCATGTCAACATGGCAGGCTACAGTTCGAGCA GCTGCATCTTTTGTTGTTTTAATGAGTGGGGAAAATTCTGCCAAACCAACGCAGCTTTGGGAAGAGTGCTCAAGCTGGTATTACTATGTA ACTATGCCAATGCCAGCCTCCACCTTCACAATTGCAGTGGGATGCTGGACAGAAATGAAGATGGAGACATGGTCATCAAATGATTTGGCA ACAGAGAGACCCTTCTCACCTTCTGAGGCCAACTTCAGGCATGTTGGTGTTTGCAGTCACATGGAATACCCCTGCCGCTTCCAGAATGCT TCTGCCACCACCCAGGAGATCATTCCTCATCGGGTCTTTGCCCCTGTGTGCCTCACGGGTGCCTGCCAAGAGACCCTTCTGCGGCTGATC CCTCCTTGCCTCTCAGCAGCACATTCTGTTCTGGGAGCACACCCGTTCTCTCGGCTGGATGTTCTCATCGTCCCTGCCAACTTTCCAAGT CTGGGGATGGCCAGACCCAGTAAAGACAAAACTGGCCACACAAGTGACTCGGGAGCATCTGTTATCAAGCATGGACTTAATCCGGAGAAG ATCTTCATGCAGGTGCATTATTTAAAGGGCTACTTCCTTCTTCGGTTTCTTGCCAAAAGACTTGGAGATGAAACCTATTTTTCATTTTTA AGAAAATTTGTGCACACATTTCATGGACAGCTGATTCTTTCCCAGGATTTCCTTCAAATGCTACTGGAGAACATTCCAGAAGAAAAAAGG CTTGAGCTGTCTGTTGAAAACATCTACCAAGACTGGCTTGAGAGTTCCGGAATACCAAAGCTACAAGGCTTTGGCCGACCAAGTGTGTAC CATGCTGCTATTGTCATCTTCCTTGAATTCTTTGCGTGGGGCCTGTTGACAACTCCAATGTTGACTGTTCTACATGAAACATTTTCTCAA CACACATTCCTCATGAATGGTCTCATTCAAGGTGTAAAGGGCCTGCTCTCTTTTTTGAGTGCCCCACTCATTGGTGCCCTGTCTGATGTG TGGGGGAGGAAGCCCTTTCTCCTCGGCACTGTATTCTTTACCTGCTTCCCAATCCCACTGATGAGGATCAGCCCATGGTGGTATTTTGCG ATGATTTCTGTGTCTGGAGTCTTCTCGGTCACGTTTTCTGTTATATTTGCCTATGTAGCTGATGTCACTCAGGAGCACGAGCGAAGTACA GCTTATGGATGGGTCTCAGCCACCTTTGCGGCTAGTCTTGTCAGCAGCCCGGCCATTGGAGCATATCTTTCTGCCAGTTACGGAGACAGC CTCGTTGTGCTGGTGGCCACAGTGGTGGCTCTTCTGGACATCTGCTTCATCTTAGTGGCTGTTCCAGAATCTCTGCCTGAGAAAATGAGA CCGGTTTCCTGGGGAGCTCAGATTTCTTGGAAACAAGCAGACCCTTTTGCGTCGTTGAAGAAAGTTGGAAAAGATTCTACTGTCTTACTA ATCTGCATCACCGTGTTTCTTTCATACCTTCCTGAAGCTGGACAGTATTCAAGTTTTTTTCTCTATCTCAGGCAGGTCATAGGTTTTGGA TCTGTTAAAATTGCAGCATTCATAGCTATGGTAGGAATTCTGTCTATTGTGGCTCAGACGGCCTTTCTTAGCATCTTGATGAGATCATTA GGAAATAAGAATACTGTCCTCCTTGGCTTGGGCTTCCAGATGCTCCAGTTAGCCTGGTACGGTTTTGGATCACAGGCCTGGATGATGTGG GCAGCAGGGACCGTGGCTGCCATGTCCAGCATCACGTTTCCGGCAATCAGTGCCCTCGTCTCTCGGAATGCAGAGTCAGATCAGCAAGGA GTTGCCCAGGGGATCATAACTGGAATAAGAGGACTATGCAATGGCCTGGGGCCAGCACTGTATGGCTTCATATTCTACATGTTCCATGTG GAACTGACTGAGTTGGGCCCGAAATTGAATTCTAACAACGTTCCCCTGCAGGGAGCTGTCATCCCAGGCCCGCCGTTTTTATTTGGGGCA TGTATAGTCCTTATGTCTTTTCTGGTTGCCTTATTCATTCCTGAATACAGTAAAGCCAGTGGAGTTCAAAAACACAGTAACAGCAGCAGC GGCAGCCTGACCAACACCCCAGAACGGGGCAGTGATGAGGACATTGAGCCACTACTGCAAGACAGCAGCATCTGGGAGCTCTCTTCATTT >In-frame_C9orf3_ENST00000375315_chr9_97741709_+_HIATL1_ENST00000375344_chr9_97177440_+_3390nt ATGGACATACAGCTGGACCCTGCCAGAGATGACCTGCCTCTCATGGCCAACACCAGCCACATACTTGTGAAGCACTATGTACTGGATTTG GATGTGGATTTTGAAAGTCAAGTCATTGAGGGGACCATAGTGCTTTTCCTCGAGGATGGAAACAGATTCAAGAAACAGAATAGCTCTATT GAGGAAGCCTGCCAATCAGAATCAAACAAAGCCTGCAAATTTGGGATGCCTGAACCCTGCCATATTCCCGTGACAAATGCAAGGACCTTC TCATCTGAAATGGAATATAATGATTTTGCAATCTGTAGTAAAGGTGAAAAAGATACTTCTGATAAAGATGGTAACCATGACAACCAGGAA CATGCTTCTGGGATTTCTAGCTCAAAGTACTGCTGTGACACAGGGAATCATGGGAGTGAGGATTTTTTGCTAGTGTTGGACTGCTGTGAT TTATCTGTGTTAAAAGTCGAGGAGGTGGATGTTGCTGCTGTGCCAGGTCTGGAAAAATTTACAAGGTCTCCTGAGCTCACGGTTGTTTCT GAGGAGTTCAGGAATCAGATTGTACGTGAACTTGTGACTTTGCCTGCAAATCGTTGGAGGGAGCAGTTAGACTATTACGCTCGCTGCAGC CAGGCTCCTGGCTGTGGGGAACTCCTCTTTGACACTGACACTTGGAGCTTGCAGATAAGGAAGACAGGGGCTCAGACAGCTACTGACTTT CCTCATGCTATCAGGATATGGTACAAAACTAAACCTGAAGGGCGATCGGTTACATGGACCTCAGACCAGAGTGGCAGGCCATGTGTTTAT ACTGTGGGATCTCCCATAAACAACAGGGCCCTTTTTCCATGCCAGGAGCCACCCGTTGCCATGTCAACATGGCAGGCTACAGTTCGAGCA GCTGCATCTTTTGTTGTTTTAATGAGTGGGGAAAATTCTGCCAAACCAACGCAGCTTTGGGAAGAGTGCTCAAGCTGGTATTACTATGTA ACTATGCCAATGCCAGCCTCCACCTTCACAATTGCAGTGGGATGCTGGACAGAAATGAAGATGGAGACATGGTCATCAAATGATTTGGCA ACAGAGAGACCCTTCTCACCTTCTGAGGCCAACTTCAGGCATGTTGGTGTTTGCAGTCACATGGAATACCCCTGCCGCTTCCAGAATGCT TCTGCCACCACCCAGGAGATCATTCCTCATCGGGTCTTTGCCCCTGTGTGCCTCACGGGTGCCTGCCAAGAGACCCTTCTGCGGCTGATC CCTCCTTGCCTCTCAGCAGCACATTCTGTTCTGGGAGCACACCCGTTCTCTCGGCTGGATGTTCTCATCGTCCCTGCCAACTTTCCAAGT CTGGGGATGGCCAGCCCACACATCATGTTCCTCTCTCAGAGCATCTTGACAGGAGGGAACCATCTCTGTGGGACCCGCCTCTGCCATGAA ATTGCCCATGCCTGGTTTGGCCTAGCCATCGGGGCCCGAGACTGGACGGAGGAGTGGCTGAGTGAAGGCTTCGCCACTCACTTGGAGGAT GTGTTTTGGGCCACAGCACAGCAGCTGGCCCCCTATGAGGCCCGGGAGCAGCAGGAGCTGAGGGCTTGTCTGCGCTGGCGTCGCCTCCAG GACGAGATGCAATGCTCCCCCGAGGAGATGCAGGTGTTAAGACCCAGTAAAGACAAAACTGGCCACACAAGTGACTCGGGAGCATCTGTT ATCAAGCATGGACTTAATCCGGAGAAGATCTTCATGCAGGTGCATTATTTAAAGGGCTACTTCCTTCTTCGGTTTCTTGCCAAAAGACTT GGAGATGAAACCTATTTTTCATTTTTAAGAAAATTTGTGCACACATTTCATGGACAGCTGATTCTTTCCCAGGATTTCCTTCAAATGCTA CTGGAGAACATTCCAGAAGAAAAAAGGCTTGAGCTGTCTGTTGAAAACATCTACCAAGACTGGCTTGAGAGTTCCGGAATACCAAAGCTA CAAGGCTTTGGCCGACCAAGTGTGTACCATGCTGCTATTGTCATCTTCCTTGAATTCTTTGCGTGGGGCCTGTTGACAACTCCAATGTTG ACTGTTCTACATGAAACATTTTCTCAACACACATTCCTCATGAATGGTCTCATTCAAGGTGTAAAGGGCCTGCTCTCTTTTTTGAGTGCC CCACTCATTGGTGCCCTGTCTGATGTGTGGGGGAGGAAGCCCTTTCTCCTCGGCACTGTATTCTTTACCTGCTTCCCAATCCCACTGATG AGGATCAGCCCATGGTGGTATTTTGCGATGATTTCTGTGTCTGGAGTCTTCTCGGTCACGTTTTCTGTTATATTTGCCTATGTAGCTGAT GTCACTCAGGAGCACGAGCGAAGTACAGCTTATGGATGGGTCTCAGCCACCTTTGCGGCTAGTCTTGTCAGCAGCCCGGCCATTGGAGCA TATCTTTCTGCCAGTTACGGAGACAGCCTCGTTGTGCTGGTGGCCACAGTGGTGGCTCTTCTGGACATCTGCTTCATCTTAGTGGCTGTT CCAGAATCTCTGCCTGAGAAAATGAGACCGGTTTCCTGGGGAGCTCAGATTTCTTGGAAACAAGCAGACCCTTTTGCGTCGTTGAAGAAA GTTGGAAAAGATTCTACTGTCTTACTAATCTGCATCACCGTGTTTCTTTCATACCTTCCTGAAGCTGGACAGTATTCAAGTTTTTTTCTC TATCTCAGGCAGGTCATAGGTTTTGGATCTGTTAAAATTGCAGCATTCATAGCTATGGTAGGAATTCTGTCTATTGTGGCTCAGACGGCC TTTCTTAGCATCTTGATGAGATCATTAGGAAATAAGAATACTGTCCTCCTTGGCTTGGGCTTCCAGATGCTCCAGTTAGCCTGGTACGGT TTTGGATCACAGGCCTGGATGATGTGGGCAGCAGGGACCGTGGCTGCCATGTCCAGCATCACGTTTCCGGCAATCAGTGCCCTCGTCTCT CGGAATGCAGAGTCAGATCAGCAAGGAGTTGCCCAGGGGATCATAACTGGAATAAGAGGACTATGCAATGGCCTGGGGCCAGCACTGTAT GGCTTCATATTCTACATGTTCCATGTGGAACTGACTGAGTTGGGCCCGAAATTGAATTCTAACAACGTTCCCCTGCAGGGAGCTGTCATC CCAGGCCCGCCGTTTTTATTTGGGGCATGTATAGTCCTTATGTCTTTTCTGGTTGCCTTATTCATTCCTGAATACAGTAAAGCCAGTGGA GTTCAAAAACACAGTAACAGCAGCAGCGGCAGCCTGACCAACACCCCAGAACGGGGCAGTGATGAGGACATTGAGCCACTACTGCAAGAC |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_C9orf3_ENST00000297979_chr9_97741709_+_HIATL1_ENST00000375344_chr9_97177440_+_4898nt GTCTGCGGAAGTGGTGACCCGTGGGACGCGGCTGAGACAGGAGACTGAAAGGAACCATAATTTGTGACATCAGTTGTTTTCTTTGATAAG CAGCTATTTATGATTCTGGAAGATTAAGGCAGATAGGAAACCCCATCTGAGATTTTAATAAATCCCTCAAACAATAAACCACATCATGGA CATACAGCTGGACCCTGCCAGAGATGACCTGCCTCTCATGGCCAACACCAGCCACATACTTGTGAAGCACTATGTACTGGATTTGGATGT GGATTTTGAAAGTCAAGTCATTGAGGGGACCATAGTGCTTTTCCTCGAGGATGGAAACAGATTCAAGAAACAGAATAGCTCTATTGAGGA AGCCTGCCAATCAGAATCAAACAAAGCCTGCAAATTTGGGATGCCTGAACCCTGCCATATTCCCGTGACAAATGCAAGGACCTTCTCATC TGAAATGGAATATAATGATTTTGCAATCTGTAGTAAAGGTGAAAAAGATACTTCTGATAAAGATGGTAACCATGACAACCAGGAACATGC TTCTGGGATTTCTAGCTCAAAGTACTGCTGTGACACAGGGAATCATGGGAGTGAGGATTTTTTGCTAGTGTTGGACTGCTGTGATTTATC TGTGTTAAAAGTCGAGGAGGTGGATGTTGCTGCTGTGCCAGGTCTGGAAAAATTTACAAGGTCTCCTGAGCTCACGGTTGTTTCTGAGGA GTTCAGGAATCAGATTGTACGTGAACTTGTGACTTTGCCTGCAAATCGTTGGAGGGAGCAGTTAGACTATTACGCTCGCTGCAGCCAGGC TCCTGGCTGTGGGGAACTCCTCTTTGACACTGACACTTGGAGCTTGCAGATAAGGAAGACAGGGGCTCAGACAGCTACTGACTTTCCTCA TGCTATCAGGATATGGTACAAAACTAAACCTGAAGGGCGATCGGTTACATGGACCTCAGACCAGAGTGGCAGGCCATGTGTTTATACTGT GGGATCTCCCATAAACAACAGGGCCCTTTTTCCATGCCAGGAGCCACCCGTTGCCATGTCAACATGGCAGGCTACAGTTCGAGCAGCTGC ATCTTTTGTTGTTTTAATGAGTGGGGAAAATTCTGCCAAACCAACGCAGCTTTGGGAAGAGTGCTCAAGCTGGTATTACTATGTAACTAT GCCAATGCCAGCCTCCACCTTCACAATTGCAGTGGGATGCTGGACAGAAATGAAGATGGAGACATGGTCATCAAATGATTTGGCAACAGA GAGACCCTTCTCACCTTCTGAGGCCAACTTCAGGCATGTTGGTGTTTGCAGTCACATGGAATACCCCTGCCGCTTCCAGAATGCTTCTGC CACCACCCAGGAGATCATTCCTCATCGGGTCTTTGCCCCTGTGTGCCTCACGGGTGCCTGCCAAGAGACCCTTCTGCGGCTGATCCCTCC TTGCCTCTCAGCAGCACATTCTGTTCTGGGAGCACACCCGTTCTCTCGGCTGGATGTTCTCATCGTCCCTGCCAACTTTCCAAGTCTGGG GATGGCCAGACCCAGTAAAGACAAAACTGGCCACACAAGTGACTCGGGAGCATCTGTTATCAAGCATGGACTTAATCCGGAGAAGATCTT CATGCAGGTGCATTATTTAAAGGGCTACTTCCTTCTTCGGTTTCTTGCCAAAAGACTTGGAGATGAAACCTATTTTTCATTTTTAAGAAA ATTTGTGCACACATTTCATGGACAGCTGATTCTTTCCCAGGATTTCCTTCAAATGCTACTGGAGAACATTCCAGAAGAAAAAAGGCTTGA GCTGTCTGTTGAAAACATCTACCAAGACTGGCTTGAGAGTTCCGGAATACCAAAGCTACAAGGCTTTGGCCGACCAAGTGTGTACCATGC TGCTATTGTCATCTTCCTTGAATTCTTTGCGTGGGGCCTGTTGACAACTCCAATGTTGACTGTTCTACATGAAACATTTTCTCAACACAC ATTCCTCATGAATGGTCTCATTCAAGGTGTAAAGGGCCTGCTCTCTTTTTTGAGTGCCCCACTCATTGGTGCCCTGTCTGATGTGTGGGG GAGGAAGCCCTTTCTCCTCGGCACTGTATTCTTTACCTGCTTCCCAATCCCACTGATGAGGATCAGCCCATGGTGGTATTTTGCGATGAT TTCTGTGTCTGGAGTCTTCTCGGTCACGTTTTCTGTTATATTTGCCTATGTAGCTGATGTCACTCAGGAGCACGAGCGAAGTACAGCTTA TGGATGGGTCTCAGCCACCTTTGCGGCTAGTCTTGTCAGCAGCCCGGCCATTGGAGCATATCTTTCTGCCAGTTACGGAGACAGCCTCGT TGTGCTGGTGGCCACAGTGGTGGCTCTTCTGGACATCTGCTTCATCTTAGTGGCTGTTCCAGAATCTCTGCCTGAGAAAATGAGACCGGT TTCCTGGGGAGCTCAGATTTCTTGGAAACAAGCAGACCCTTTTGCGTCGTTGAAGAAAGTTGGAAAAGATTCTACTGTCTTACTAATCTG CATCACCGTGTTTCTTTCATACCTTCCTGAAGCTGGACAGTATTCAAGTTTTTTTCTCTATCTCAGGCAGGTCATAGGTTTTGGATCTGT TAAAATTGCAGCATTCATAGCTATGGTAGGAATTCTGTCTATTGTGGCTCAGACGGCCTTTCTTAGCATCTTGATGAGATCATTAGGAAA TAAGAATACTGTCCTCCTTGGCTTGGGCTTCCAGATGCTCCAGTTAGCCTGGTACGGTTTTGGATCACAGGCCTGGATGATGTGGGCAGC AGGGACCGTGGCTGCCATGTCCAGCATCACGTTTCCGGCAATCAGTGCCCTCGTCTCTCGGAATGCAGAGTCAGATCAGCAAGGAGTTGC CCAGGGGATCATAACTGGAATAAGAGGACTATGCAATGGCCTGGGGCCAGCACTGTATGGCTTCATATTCTACATGTTCCATGTGGAACT GACTGAGTTGGGCCCGAAATTGAATTCTAACAACGTTCCCCTGCAGGGAGCTGTCATCCCAGGCCCGCCGTTTTTATTTGGGGCATGTAT AGTCCTTATGTCTTTTCTGGTTGCCTTATTCATTCCTGAATACAGTAAAGCCAGTGGAGTTCAAAAACACAGTAACAGCAGCAGCGGCAG CCTGACCAACACCCCAGAACGGGGCAGTGATGAGGACATTGAGCCACTACTGCAAGACAGCAGCATCTGGGAGCTCTCTTCATTTGAGGA GCCTGGGAATCAGTGCACTGAGCTGTAAACTCGGCAGAAAGTGGGATTCTGCATACGCCATCTCTGAGAGCCATGGAGGGAGCCACACCC CTGGTGACTTCATGGTGCTGGATGGGAGACGCTAGCGGCATCCTTCAGGGCCAAGTTTGATAAATACCACCGCCATCATTCTGCTCATCC TCCTCCTGTTTTTTTTTTTTCTCTTACATTCTTTTTTTTTTTCCTGTTTATACATTAGAACAAGATAAGATTTGAAATACTTCCTTGCAA ATAATGTGCAACTCCCAAGGTGAAACTCAAATAGAAAAAGTCATCTCTCTGGTAGAAAGGATGGCTTTCCTGTAATGACTATAGAGTAAG AGTGGCAGCAATCTTTCCATGCCCTTTTCAGCAGAAGGCACAGAACAGTAGCGGGACTGCCATCTCTGGCAAGATTTCAGGTAAAGAATC TCTTCTTAATTTCTACCTTCCTGTTTCTCTGAATCAGCCCATAGGTGTTGATGAGTGGCCACTCTTAAAGAGTCACTCAGTATCAGGGAT CTACTGTCTTTGTTCAAAGGTCAAATAAAAACCTAGTCTCCTTTTATTCTACTTTCTATTCTTAGCTAGAATGAAACTCAGCATATATAC ACTTCTGGACATAATAATATTGAATAGTAATTACCTTTACTAGATGAAAGAAATTTTCATTACAAACTTAAATCATGTAAAACTCAACAA CTCAGATTCCTGGACCTGGTGTCCTGGTTGGGTCCAAGGTGATTTTACAGAAGAAAAAAACAACTCAAGCATTCTGGTGGCAACATAGAG ATTGTAGGCTGCTTCTAAGAAAGTTATTAACAATTTGGAAATTCCTAAGTAGGATGAGAGTTAGTAACTGGATACGAGTGAAGTTTATAT CCAAGTTCAGACTCAAAGGCATTATTATGATTTGCTTCTTCCCATGTCTTCCATGTCCTGCTTCTCAAAGTTTTTCTCATCCATCACACT CCTGCCTTAACTGCTCTGAGTATGCATTTGTTTTCAATTCATCTTTATTTCAATCTGTTTAACTTTTGAATCGCATGGGAATACGCACAT TAAGTTCCTTTCTAAAATAAGGTTTTATGAAGCTGAGTTTCACGATAAGTGTCTTGCTATTTTTTGAGATGTTTTATGGACAAAGAAAAC TTTACAGATTTATATGTATTTTGCTGCACCAGTAAATGGACCATTAACTAGGGCCCACCTTTAACAGAGCACCCCTTTGAAAGTTTTATA GGTATGAAATATATGTAGATATTTGTAAAGGGTTTTAATTTTTTTTTTTTGATGGGGTGCTGTGTAAATCTTGTATTTATAAATGTAATG AAGGTATTGACAGAAAAAAATATATACAACTTTTATAAAGGATTGTGTACTGACTGAATACATTTAAAAGAAAATATATTTTGAAACCTG TTCTGCTATGAACAGAGATAACATATCTTTTTACTATGCTATTGGTTTTTAGGTTAAGCTTCCTAATGCATAATAAATTTACAGTGGTTA CTTTTATGTCTTGTGTCTTTTTTTTAAAGCAAATAGTATTGCTCTTTTGGGTTCTCTGTTGGGTGGCTTTCAATTAAACTGAGTTGTAAT >In-frame_C9orf3_ENST00000375315_chr9_97741709_+_HIATL1_ENST00000375344_chr9_97177440_+_5020nt ATGGACATACAGCTGGACCCTGCCAGAGATGACCTGCCTCTCATGGCCAACACCAGCCACATACTTGTGAAGCACTATGTACTGGATTTG GATGTGGATTTTGAAAGTCAAGTCATTGAGGGGACCATAGTGCTTTTCCTCGAGGATGGAAACAGATTCAAGAAACAGAATAGCTCTATT GAGGAAGCCTGCCAATCAGAATCAAACAAAGCCTGCAAATTTGGGATGCCTGAACCCTGCCATATTCCCGTGACAAATGCAAGGACCTTC TCATCTGAAATGGAATATAATGATTTTGCAATCTGTAGTAAAGGTGAAAAAGATACTTCTGATAAAGATGGTAACCATGACAACCAGGAA CATGCTTCTGGGATTTCTAGCTCAAAGTACTGCTGTGACACAGGGAATCATGGGAGTGAGGATTTTTTGCTAGTGTTGGACTGCTGTGAT TTATCTGTGTTAAAAGTCGAGGAGGTGGATGTTGCTGCTGTGCCAGGTCTGGAAAAATTTACAAGGTCTCCTGAGCTCACGGTTGTTTCT GAGGAGTTCAGGAATCAGATTGTACGTGAACTTGTGACTTTGCCTGCAAATCGTTGGAGGGAGCAGTTAGACTATTACGCTCGCTGCAGC CAGGCTCCTGGCTGTGGGGAACTCCTCTTTGACACTGACACTTGGAGCTTGCAGATAAGGAAGACAGGGGCTCAGACAGCTACTGACTTT CCTCATGCTATCAGGATATGGTACAAAACTAAACCTGAAGGGCGATCGGTTACATGGACCTCAGACCAGAGTGGCAGGCCATGTGTTTAT ACTGTGGGATCTCCCATAAACAACAGGGCCCTTTTTCCATGCCAGGAGCCACCCGTTGCCATGTCAACATGGCAGGCTACAGTTCGAGCA GCTGCATCTTTTGTTGTTTTAATGAGTGGGGAAAATTCTGCCAAACCAACGCAGCTTTGGGAAGAGTGCTCAAGCTGGTATTACTATGTA ACTATGCCAATGCCAGCCTCCACCTTCACAATTGCAGTGGGATGCTGGACAGAAATGAAGATGGAGACATGGTCATCAAATGATTTGGCA ACAGAGAGACCCTTCTCACCTTCTGAGGCCAACTTCAGGCATGTTGGTGTTTGCAGTCACATGGAATACCCCTGCCGCTTCCAGAATGCT TCTGCCACCACCCAGGAGATCATTCCTCATCGGGTCTTTGCCCCTGTGTGCCTCACGGGTGCCTGCCAAGAGACCCTTCTGCGGCTGATC CCTCCTTGCCTCTCAGCAGCACATTCTGTTCTGGGAGCACACCCGTTCTCTCGGCTGGATGTTCTCATCGTCCCTGCCAACTTTCCAAGT CTGGGGATGGCCAGCCCACACATCATGTTCCTCTCTCAGAGCATCTTGACAGGAGGGAACCATCTCTGTGGGACCCGCCTCTGCCATGAA ATTGCCCATGCCTGGTTTGGCCTAGCCATCGGGGCCCGAGACTGGACGGAGGAGTGGCTGAGTGAAGGCTTCGCCACTCACTTGGAGGAT GTGTTTTGGGCCACAGCACAGCAGCTGGCCCCCTATGAGGCCCGGGAGCAGCAGGAGCTGAGGGCTTGTCTGCGCTGGCGTCGCCTCCAG GACGAGATGCAATGCTCCCCCGAGGAGATGCAGGTGTTAAGACCCAGTAAAGACAAAACTGGCCACACAAGTGACTCGGGAGCATCTGTT ATCAAGCATGGACTTAATCCGGAGAAGATCTTCATGCAGGTGCATTATTTAAAGGGCTACTTCCTTCTTCGGTTTCTTGCCAAAAGACTT GGAGATGAAACCTATTTTTCATTTTTAAGAAAATTTGTGCACACATTTCATGGACAGCTGATTCTTTCCCAGGATTTCCTTCAAATGCTA CTGGAGAACATTCCAGAAGAAAAAAGGCTTGAGCTGTCTGTTGAAAACATCTACCAAGACTGGCTTGAGAGTTCCGGAATACCAAAGCTA CAAGGCTTTGGCCGACCAAGTGTGTACCATGCTGCTATTGTCATCTTCCTTGAATTCTTTGCGTGGGGCCTGTTGACAACTCCAATGTTG ACTGTTCTACATGAAACATTTTCTCAACACACATTCCTCATGAATGGTCTCATTCAAGGTGTAAAGGGCCTGCTCTCTTTTTTGAGTGCC CCACTCATTGGTGCCCTGTCTGATGTGTGGGGGAGGAAGCCCTTTCTCCTCGGCACTGTATTCTTTACCTGCTTCCCAATCCCACTGATG AGGATCAGCCCATGGTGGTATTTTGCGATGATTTCTGTGTCTGGAGTCTTCTCGGTCACGTTTTCTGTTATATTTGCCTATGTAGCTGAT GTCACTCAGGAGCACGAGCGAAGTACAGCTTATGGATGGGTCTCAGCCACCTTTGCGGCTAGTCTTGTCAGCAGCCCGGCCATTGGAGCA TATCTTTCTGCCAGTTACGGAGACAGCCTCGTTGTGCTGGTGGCCACAGTGGTGGCTCTTCTGGACATCTGCTTCATCTTAGTGGCTGTT CCAGAATCTCTGCCTGAGAAAATGAGACCGGTTTCCTGGGGAGCTCAGATTTCTTGGAAACAAGCAGACCCTTTTGCGTCGTTGAAGAAA GTTGGAAAAGATTCTACTGTCTTACTAATCTGCATCACCGTGTTTCTTTCATACCTTCCTGAAGCTGGACAGTATTCAAGTTTTTTTCTC TATCTCAGGCAGGTCATAGGTTTTGGATCTGTTAAAATTGCAGCATTCATAGCTATGGTAGGAATTCTGTCTATTGTGGCTCAGACGGCC TTTCTTAGCATCTTGATGAGATCATTAGGAAATAAGAATACTGTCCTCCTTGGCTTGGGCTTCCAGATGCTCCAGTTAGCCTGGTACGGT TTTGGATCACAGGCCTGGATGATGTGGGCAGCAGGGACCGTGGCTGCCATGTCCAGCATCACGTTTCCGGCAATCAGTGCCCTCGTCTCT CGGAATGCAGAGTCAGATCAGCAAGGAGTTGCCCAGGGGATCATAACTGGAATAAGAGGACTATGCAATGGCCTGGGGCCAGCACTGTAT GGCTTCATATTCTACATGTTCCATGTGGAACTGACTGAGTTGGGCCCGAAATTGAATTCTAACAACGTTCCCCTGCAGGGAGCTGTCATC CCAGGCCCGCCGTTTTTATTTGGGGCATGTATAGTCCTTATGTCTTTTCTGGTTGCCTTATTCATTCCTGAATACAGTAAAGCCAGTGGA GTTCAAAAACACAGTAACAGCAGCAGCGGCAGCCTGACCAACACCCCAGAACGGGGCAGTGATGAGGACATTGAGCCACTACTGCAAGAC AGCAGCATCTGGGAGCTCTCTTCATTTGAGGAGCCTGGGAATCAGTGCACTGAGCTGTAAACTCGGCAGAAAGTGGGATTCTGCATACGC CATCTCTGAGAGCCATGGAGGGAGCCACACCCCTGGTGACTTCATGGTGCTGGATGGGAGACGCTAGCGGCATCCTTCAGGGCCAAGTTT GATAAATACCACCGCCATCATTCTGCTCATCCTCCTCCTGTTTTTTTTTTTTCTCTTACATTCTTTTTTTTTTTCCTGTTTATACATTAG AACAAGATAAGATTTGAAATACTTCCTTGCAAATAATGTGCAACTCCCAAGGTGAAACTCAAATAGAAAAAGTCATCTCTCTGGTAGAAA GGATGGCTTTCCTGTAATGACTATAGAGTAAGAGTGGCAGCAATCTTTCCATGCCCTTTTCAGCAGAAGGCACAGAACAGTAGCGGGACT GCCATCTCTGGCAAGATTTCAGGTAAAGAATCTCTTCTTAATTTCTACCTTCCTGTTTCTCTGAATCAGCCCATAGGTGTTGATGAGTGG CCACTCTTAAAGAGTCACTCAGTATCAGGGATCTACTGTCTTTGTTCAAAGGTCAAATAAAAACCTAGTCTCCTTTTATTCTACTTTCTA TTCTTAGCTAGAATGAAACTCAGCATATATACACTTCTGGACATAATAATATTGAATAGTAATTACCTTTACTAGATGAAAGAAATTTTC ATTACAAACTTAAATCATGTAAAACTCAACAACTCAGATTCCTGGACCTGGTGTCCTGGTTGGGTCCAAGGTGATTTTACAGAAGAAAAA AACAACTCAAGCATTCTGGTGGCAACATAGAGATTGTAGGCTGCTTCTAAGAAAGTTATTAACAATTTGGAAATTCCTAAGTAGGATGAG AGTTAGTAACTGGATACGAGTGAAGTTTATATCCAAGTTCAGACTCAAAGGCATTATTATGATTTGCTTCTTCCCATGTCTTCCATGTCC TGCTTCTCAAAGTTTTTCTCATCCATCACACTCCTGCCTTAACTGCTCTGAGTATGCATTTGTTTTCAATTCATCTTTATTTCAATCTGT TTAACTTTTGAATCGCATGGGAATACGCACATTAAGTTCCTTTCTAAAATAAGGTTTTATGAAGCTGAGTTTCACGATAAGTGTCTTGCT ATTTTTTGAGATGTTTTATGGACAAAGAAAACTTTACAGATTTATATGTATTTTGCTGCACCAGTAAATGGACCATTAACTAGGGCCCAC CTTTAACAGAGCACCCCTTTGAAAGTTTTATAGGTATGAAATATATGTAGATATTTGTAAAGGGTTTTAATTTTTTTTTTTTGATGGGGT GCTGTGTAAATCTTGTATTTATAAATGTAATGAAGGTATTGACAGAAAAAAATATATACAACTTTTATAAAGGATTGTGTACTGACTGAA TACATTTAAAAGAAAATATATTTTGAAACCTGTTCTGCTATGAACAGAGATAACATATCTTTTTACTATGCTATTGGTTTTTAGGTTAAG CTTCCTAATGCATAATAAATTTACAGTGGTTACTTTTATGTCTTGTGTCTTTTTTTTAAAGCAAATAGTATTGCTCTTTTGGGTTCTCTG |
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FusionGenePPI for C9orf3_HIATL1 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
C9orf3 | SUN2, LRRC40, ZDHHC17, TUBA4A, SUZ12, TUBB3 | HIATL1 | ELAVL1, UNK, TRIM25 |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for C9orf3_HIATL1 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for C9orf3_HIATL1 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | C9orf3 | C0004238 | Atrial Fibrillation | 1 | CTD_human |
Hgene | C9orf3 | C0032927 | Precancerous Conditions | 1 | CTD_human |
Hgene | C9orf3 | C3495559 | Juvenile arthritis | 1 | CTD_human |