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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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Fusion gene ID: 5109

FusionGeneSummary for C9orf3_HIATL1

check button Fusion gene summary
Fusion gene informationFusion gene name: C9orf3_HIATL1
Fusion gene ID: 5109
HgeneTgene
Gene symbol

C9orf3

HIATL1

Gene ID

84909

84641

Gene namechromosome 9 open reading frame 3major facilitator superfamily domain containing 14B
SynonymsAOPEP|AP-O|APO|C90RF3|ONPEPHIATL1
Cytomap

9q22.32

9q22.32

Type of geneprotein-codingprotein-coding
Descriptionaminopeptidase Ohippocampus abundant transcript-like protein 1hippocampus abundant transcript-like 1
Modification date2018052320180523
UniProtAcc

Ensembl transtripts involved in fusion geneENST00000277198, ENST00000297979, 
ENST00000375315, ENST00000395357, 
ENST00000425634, ENST00000433691, 
ENST00000473778, 
ENST00000375344, 
ENST00000428393, 
Fusion gene scores* DoF score12 X 11 X 7=9241 X 1 X 1=1
# samples 121
** MAII scorelog2(12/924*10)=-2.94485844580754
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(1/1*10)=3.32192809488736
Context

PubMed: C9orf3 [Title/Abstract] AND HIATL1 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneC9orf3

GO:0006508

proteolysis

15687497


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGARVSTADTCGA-VQ-A925-01AC9orf3chr9

97741709

+HIATL1chr9

97177440

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
intron-3CDSENST00000277198ENST00000375344C9orf3chr9

97741709

+HIATL1chr9

97177440

+
intron-intronENST00000277198ENST00000428393C9orf3chr9

97741709

+HIATL1chr9

97177440

+
In-frameENST00000297979ENST00000375344C9orf3chr9

97741709

+HIATL1chr9

97177440

+
5CDS-intronENST00000297979ENST00000428393C9orf3chr9

97741709

+HIATL1chr9

97177440

+
In-frameENST00000375315ENST00000375344C9orf3chr9

97741709

+HIATL1chr9

97177440

+
5CDS-intronENST00000375315ENST00000428393C9orf3chr9

97741709

+HIATL1chr9

97177440

+
intron-3CDSENST00000395357ENST00000375344C9orf3chr9

97741709

+HIATL1chr9

97177440

+
intron-intronENST00000395357ENST00000428393C9orf3chr9

97741709

+HIATL1chr9

97177440

+
intron-3CDSENST00000425634ENST00000375344C9orf3chr9

97741709

+HIATL1chr9

97177440

+
intron-intronENST00000425634ENST00000428393C9orf3chr9

97741709

+HIATL1chr9

97177440

+
intron-3CDSENST00000433691ENST00000375344C9orf3chr9

97741709

+HIATL1chr9

97177440

+
intron-intronENST00000433691ENST00000428393C9orf3chr9

97741709

+HIATL1chr9

97177440

+
intron-3CDSENST00000473778ENST00000375344C9orf3chr9

97741709

+HIATL1chr9

97177440

+
intron-intronENST00000473778ENST00000428393C9orf3chr9

97741709

+HIATL1chr9

97177440

+

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FusionProtFeatures for C9orf3_HIATL1


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
C9orf3

HIATL1

Lectin that binds to various sugars: galactose > mannose= fucose > N-acetylglucosamine > N-acetylgalactosamine(PubMed:10224141). Acts as a chemoattractant, probably involved inthe regulation of cell migration (PubMed:28301481).{ECO:0000269|PubMed:10224141, ECO:0000269|PubMed:28301481}. Lectin that binds to various sugars: galactose > mannose= fucose > N-acetylglucosamine > N-acetylgalactosamine(PubMed:10224141). Acts as a chemoattractant, probably involved inthe regulation of cell migration (PubMed:28301481).{ECO:0000269|PubMed:10224141, ECO:0000269|PubMed:28301481}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for C9orf3_HIATL1


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.
>In-frame_C9orf3_ENST00000297979_chr9_97741709_+_HIATL1_ENST00000375344_chr9_97177440_+_1031aa
MDIQLDPARDDLPLMANTSHILVKHYVLDLDVDFESQVIEGTIVLFLEDGNRFKKQNSSIEEACQSESNKACKFGMPEPCHIPVTNARTF
SSEMEYNDFAICSKGEKDTSDKDGNHDNQEHASGISSSKYCCDTGNHGSEDFLLVLDCCDLSVLKVEEVDVAAVPGLEKFTRSPELTVVS
EEFRNQIVRELVTLPANRWREQLDYYARCSQAPGCGELLFDTDTWSLQIRKTGAQTATDFPHAIRIWYKTKPEGRSVTWTSDQSGRPCVY
TVGSPINNRALFPCQEPPVAMSTWQATVRAAASFVVLMSGENSAKPTQLWEECSSWYYYVTMPMPASTFTIAVGCWTEMKMETWSSNDLA
TERPFSPSEANFRHVGVCSHMEYPCRFQNASATTQEIIPHRVFAPVCLTGACQETLLRLIPPCLSAAHSVLGAHPFSRLDVLIVPANFPS
LGMARPSKDKTGHTSDSGASVIKHGLNPEKIFMQVHYLKGYFLLRFLAKRLGDETYFSFLRKFVHTFHGQLILSQDFLQMLLENIPEEKR
LELSVENIYQDWLESSGIPKLQGFGRPSVYHAAIVIFLEFFAWGLLTTPMLTVLHETFSQHTFLMNGLIQGVKGLLSFLSAPLIGALSDV
WGRKPFLLGTVFFTCFPIPLMRISPWWYFAMISVSGVFSVTFSVIFAYVADVTQEHERSTAYGWVSATFAASLVSSPAIGAYLSASYGDS
LVVLVATVVALLDICFILVAVPESLPEKMRPVSWGAQISWKQADPFASLKKVGKDSTVLLICITVFLSYLPEAGQYSSFFLYLRQVIGFG
SVKIAAFIAMVGILSIVAQTAFLSILMRSLGNKNTVLLGLGFQMLQLAWYGFGSQAWMMWAAGTVAAMSSITFPAISALVSRNAESDQQG
VAQGIITGIRGLCNGLGPALYGFIFYMFHVELTELGPKLNSNNVPLQGAVIPGPPFLFGACIVLMSFLVALFIPEYSKASGVQKHSNSSS

>In-frame_C9orf3_ENST00000375315_chr9_97741709_+_HIATL1_ENST00000375344_chr9_97177440_+_1130aa
MDIQLDPARDDLPLMANTSHILVKHYVLDLDVDFESQVIEGTIVLFLEDGNRFKKQNSSIEEACQSESNKACKFGMPEPCHIPVTNARTF
SSEMEYNDFAICSKGEKDTSDKDGNHDNQEHASGISSSKYCCDTGNHGSEDFLLVLDCCDLSVLKVEEVDVAAVPGLEKFTRSPELTVVS
EEFRNQIVRELVTLPANRWREQLDYYARCSQAPGCGELLFDTDTWSLQIRKTGAQTATDFPHAIRIWYKTKPEGRSVTWTSDQSGRPCVY
TVGSPINNRALFPCQEPPVAMSTWQATVRAAASFVVLMSGENSAKPTQLWEECSSWYYYVTMPMPASTFTIAVGCWTEMKMETWSSNDLA
TERPFSPSEANFRHVGVCSHMEYPCRFQNASATTQEIIPHRVFAPVCLTGACQETLLRLIPPCLSAAHSVLGAHPFSRLDVLIVPANFPS
LGMASPHIMFLSQSILTGGNHLCGTRLCHEIAHAWFGLAIGARDWTEEWLSEGFATHLEDVFWATAQQLAPYEAREQQELRACLRWRRLQ
DEMQCSPEEMQVLRPSKDKTGHTSDSGASVIKHGLNPEKIFMQVHYLKGYFLLRFLAKRLGDETYFSFLRKFVHTFHGQLILSQDFLQML
LENIPEEKRLELSVENIYQDWLESSGIPKLQGFGRPSVYHAAIVIFLEFFAWGLLTTPMLTVLHETFSQHTFLMNGLIQGVKGLLSFLSA
PLIGALSDVWGRKPFLLGTVFFTCFPIPLMRISPWWYFAMISVSGVFSVTFSVIFAYVADVTQEHERSTAYGWVSATFAASLVSSPAIGA
YLSASYGDSLVVLVATVVALLDICFILVAVPESLPEKMRPVSWGAQISWKQADPFASLKKVGKDSTVLLICITVFLSYLPEAGQYSSFFL
YLRQVIGFGSVKIAAFIAMVGILSIVAQTAFLSILMRSLGNKNTVLLGLGFQMLQLAWYGFGSQAWMMWAAGTVAAMSSITFPAISALVS
RNAESDQQGVAQGIITGIRGLCNGLGPALYGFIFYMFHVELTELGPKLNSNNVPLQGAVIPGPPFLFGACIVLMSFLVALFIPEYSKASG


* Fusion transcript sequences (only coding sequence (CDS) region).
>In-frame_C9orf3_ENST00000297979_chr9_97741709_+_HIATL1_ENST00000375344_chr9_97177440_+_3093nt
ATGGACATACAGCTGGACCCTGCCAGAGATGACCTGCCTCTCATGGCCAACACCAGCCACATACTTGTGAAGCACTATGTACTGGATTTG
GATGTGGATTTTGAAAGTCAAGTCATTGAGGGGACCATAGTGCTTTTCCTCGAGGATGGAAACAGATTCAAGAAACAGAATAGCTCTATT
GAGGAAGCCTGCCAATCAGAATCAAACAAAGCCTGCAAATTTGGGATGCCTGAACCCTGCCATATTCCCGTGACAAATGCAAGGACCTTC
TCATCTGAAATGGAATATAATGATTTTGCAATCTGTAGTAAAGGTGAAAAAGATACTTCTGATAAAGATGGTAACCATGACAACCAGGAA
CATGCTTCTGGGATTTCTAGCTCAAAGTACTGCTGTGACACAGGGAATCATGGGAGTGAGGATTTTTTGCTAGTGTTGGACTGCTGTGAT
TTATCTGTGTTAAAAGTCGAGGAGGTGGATGTTGCTGCTGTGCCAGGTCTGGAAAAATTTACAAGGTCTCCTGAGCTCACGGTTGTTTCT
GAGGAGTTCAGGAATCAGATTGTACGTGAACTTGTGACTTTGCCTGCAAATCGTTGGAGGGAGCAGTTAGACTATTACGCTCGCTGCAGC
CAGGCTCCTGGCTGTGGGGAACTCCTCTTTGACACTGACACTTGGAGCTTGCAGATAAGGAAGACAGGGGCTCAGACAGCTACTGACTTT
CCTCATGCTATCAGGATATGGTACAAAACTAAACCTGAAGGGCGATCGGTTACATGGACCTCAGACCAGAGTGGCAGGCCATGTGTTTAT
ACTGTGGGATCTCCCATAAACAACAGGGCCCTTTTTCCATGCCAGGAGCCACCCGTTGCCATGTCAACATGGCAGGCTACAGTTCGAGCA
GCTGCATCTTTTGTTGTTTTAATGAGTGGGGAAAATTCTGCCAAACCAACGCAGCTTTGGGAAGAGTGCTCAAGCTGGTATTACTATGTA
ACTATGCCAATGCCAGCCTCCACCTTCACAATTGCAGTGGGATGCTGGACAGAAATGAAGATGGAGACATGGTCATCAAATGATTTGGCA
ACAGAGAGACCCTTCTCACCTTCTGAGGCCAACTTCAGGCATGTTGGTGTTTGCAGTCACATGGAATACCCCTGCCGCTTCCAGAATGCT
TCTGCCACCACCCAGGAGATCATTCCTCATCGGGTCTTTGCCCCTGTGTGCCTCACGGGTGCCTGCCAAGAGACCCTTCTGCGGCTGATC
CCTCCTTGCCTCTCAGCAGCACATTCTGTTCTGGGAGCACACCCGTTCTCTCGGCTGGATGTTCTCATCGTCCCTGCCAACTTTCCAAGT
CTGGGGATGGCCAGACCCAGTAAAGACAAAACTGGCCACACAAGTGACTCGGGAGCATCTGTTATCAAGCATGGACTTAATCCGGAGAAG
ATCTTCATGCAGGTGCATTATTTAAAGGGCTACTTCCTTCTTCGGTTTCTTGCCAAAAGACTTGGAGATGAAACCTATTTTTCATTTTTA
AGAAAATTTGTGCACACATTTCATGGACAGCTGATTCTTTCCCAGGATTTCCTTCAAATGCTACTGGAGAACATTCCAGAAGAAAAAAGG
CTTGAGCTGTCTGTTGAAAACATCTACCAAGACTGGCTTGAGAGTTCCGGAATACCAAAGCTACAAGGCTTTGGCCGACCAAGTGTGTAC
CATGCTGCTATTGTCATCTTCCTTGAATTCTTTGCGTGGGGCCTGTTGACAACTCCAATGTTGACTGTTCTACATGAAACATTTTCTCAA
CACACATTCCTCATGAATGGTCTCATTCAAGGTGTAAAGGGCCTGCTCTCTTTTTTGAGTGCCCCACTCATTGGTGCCCTGTCTGATGTG
TGGGGGAGGAAGCCCTTTCTCCTCGGCACTGTATTCTTTACCTGCTTCCCAATCCCACTGATGAGGATCAGCCCATGGTGGTATTTTGCG
ATGATTTCTGTGTCTGGAGTCTTCTCGGTCACGTTTTCTGTTATATTTGCCTATGTAGCTGATGTCACTCAGGAGCACGAGCGAAGTACA
GCTTATGGATGGGTCTCAGCCACCTTTGCGGCTAGTCTTGTCAGCAGCCCGGCCATTGGAGCATATCTTTCTGCCAGTTACGGAGACAGC
CTCGTTGTGCTGGTGGCCACAGTGGTGGCTCTTCTGGACATCTGCTTCATCTTAGTGGCTGTTCCAGAATCTCTGCCTGAGAAAATGAGA
CCGGTTTCCTGGGGAGCTCAGATTTCTTGGAAACAAGCAGACCCTTTTGCGTCGTTGAAGAAAGTTGGAAAAGATTCTACTGTCTTACTA
ATCTGCATCACCGTGTTTCTTTCATACCTTCCTGAAGCTGGACAGTATTCAAGTTTTTTTCTCTATCTCAGGCAGGTCATAGGTTTTGGA
TCTGTTAAAATTGCAGCATTCATAGCTATGGTAGGAATTCTGTCTATTGTGGCTCAGACGGCCTTTCTTAGCATCTTGATGAGATCATTA
GGAAATAAGAATACTGTCCTCCTTGGCTTGGGCTTCCAGATGCTCCAGTTAGCCTGGTACGGTTTTGGATCACAGGCCTGGATGATGTGG
GCAGCAGGGACCGTGGCTGCCATGTCCAGCATCACGTTTCCGGCAATCAGTGCCCTCGTCTCTCGGAATGCAGAGTCAGATCAGCAAGGA
GTTGCCCAGGGGATCATAACTGGAATAAGAGGACTATGCAATGGCCTGGGGCCAGCACTGTATGGCTTCATATTCTACATGTTCCATGTG
GAACTGACTGAGTTGGGCCCGAAATTGAATTCTAACAACGTTCCCCTGCAGGGAGCTGTCATCCCAGGCCCGCCGTTTTTATTTGGGGCA
TGTATAGTCCTTATGTCTTTTCTGGTTGCCTTATTCATTCCTGAATACAGTAAAGCCAGTGGAGTTCAAAAACACAGTAACAGCAGCAGC
GGCAGCCTGACCAACACCCCAGAACGGGGCAGTGATGAGGACATTGAGCCACTACTGCAAGACAGCAGCATCTGGGAGCTCTCTTCATTT

>In-frame_C9orf3_ENST00000375315_chr9_97741709_+_HIATL1_ENST00000375344_chr9_97177440_+_3390nt
ATGGACATACAGCTGGACCCTGCCAGAGATGACCTGCCTCTCATGGCCAACACCAGCCACATACTTGTGAAGCACTATGTACTGGATTTG
GATGTGGATTTTGAAAGTCAAGTCATTGAGGGGACCATAGTGCTTTTCCTCGAGGATGGAAACAGATTCAAGAAACAGAATAGCTCTATT
GAGGAAGCCTGCCAATCAGAATCAAACAAAGCCTGCAAATTTGGGATGCCTGAACCCTGCCATATTCCCGTGACAAATGCAAGGACCTTC
TCATCTGAAATGGAATATAATGATTTTGCAATCTGTAGTAAAGGTGAAAAAGATACTTCTGATAAAGATGGTAACCATGACAACCAGGAA
CATGCTTCTGGGATTTCTAGCTCAAAGTACTGCTGTGACACAGGGAATCATGGGAGTGAGGATTTTTTGCTAGTGTTGGACTGCTGTGAT
TTATCTGTGTTAAAAGTCGAGGAGGTGGATGTTGCTGCTGTGCCAGGTCTGGAAAAATTTACAAGGTCTCCTGAGCTCACGGTTGTTTCT
GAGGAGTTCAGGAATCAGATTGTACGTGAACTTGTGACTTTGCCTGCAAATCGTTGGAGGGAGCAGTTAGACTATTACGCTCGCTGCAGC
CAGGCTCCTGGCTGTGGGGAACTCCTCTTTGACACTGACACTTGGAGCTTGCAGATAAGGAAGACAGGGGCTCAGACAGCTACTGACTTT
CCTCATGCTATCAGGATATGGTACAAAACTAAACCTGAAGGGCGATCGGTTACATGGACCTCAGACCAGAGTGGCAGGCCATGTGTTTAT
ACTGTGGGATCTCCCATAAACAACAGGGCCCTTTTTCCATGCCAGGAGCCACCCGTTGCCATGTCAACATGGCAGGCTACAGTTCGAGCA
GCTGCATCTTTTGTTGTTTTAATGAGTGGGGAAAATTCTGCCAAACCAACGCAGCTTTGGGAAGAGTGCTCAAGCTGGTATTACTATGTA
ACTATGCCAATGCCAGCCTCCACCTTCACAATTGCAGTGGGATGCTGGACAGAAATGAAGATGGAGACATGGTCATCAAATGATTTGGCA
ACAGAGAGACCCTTCTCACCTTCTGAGGCCAACTTCAGGCATGTTGGTGTTTGCAGTCACATGGAATACCCCTGCCGCTTCCAGAATGCT
TCTGCCACCACCCAGGAGATCATTCCTCATCGGGTCTTTGCCCCTGTGTGCCTCACGGGTGCCTGCCAAGAGACCCTTCTGCGGCTGATC
CCTCCTTGCCTCTCAGCAGCACATTCTGTTCTGGGAGCACACCCGTTCTCTCGGCTGGATGTTCTCATCGTCCCTGCCAACTTTCCAAGT
CTGGGGATGGCCAGCCCACACATCATGTTCCTCTCTCAGAGCATCTTGACAGGAGGGAACCATCTCTGTGGGACCCGCCTCTGCCATGAA
ATTGCCCATGCCTGGTTTGGCCTAGCCATCGGGGCCCGAGACTGGACGGAGGAGTGGCTGAGTGAAGGCTTCGCCACTCACTTGGAGGAT
GTGTTTTGGGCCACAGCACAGCAGCTGGCCCCCTATGAGGCCCGGGAGCAGCAGGAGCTGAGGGCTTGTCTGCGCTGGCGTCGCCTCCAG
GACGAGATGCAATGCTCCCCCGAGGAGATGCAGGTGTTAAGACCCAGTAAAGACAAAACTGGCCACACAAGTGACTCGGGAGCATCTGTT
ATCAAGCATGGACTTAATCCGGAGAAGATCTTCATGCAGGTGCATTATTTAAAGGGCTACTTCCTTCTTCGGTTTCTTGCCAAAAGACTT
GGAGATGAAACCTATTTTTCATTTTTAAGAAAATTTGTGCACACATTTCATGGACAGCTGATTCTTTCCCAGGATTTCCTTCAAATGCTA
CTGGAGAACATTCCAGAAGAAAAAAGGCTTGAGCTGTCTGTTGAAAACATCTACCAAGACTGGCTTGAGAGTTCCGGAATACCAAAGCTA
CAAGGCTTTGGCCGACCAAGTGTGTACCATGCTGCTATTGTCATCTTCCTTGAATTCTTTGCGTGGGGCCTGTTGACAACTCCAATGTTG
ACTGTTCTACATGAAACATTTTCTCAACACACATTCCTCATGAATGGTCTCATTCAAGGTGTAAAGGGCCTGCTCTCTTTTTTGAGTGCC
CCACTCATTGGTGCCCTGTCTGATGTGTGGGGGAGGAAGCCCTTTCTCCTCGGCACTGTATTCTTTACCTGCTTCCCAATCCCACTGATG
AGGATCAGCCCATGGTGGTATTTTGCGATGATTTCTGTGTCTGGAGTCTTCTCGGTCACGTTTTCTGTTATATTTGCCTATGTAGCTGAT
GTCACTCAGGAGCACGAGCGAAGTACAGCTTATGGATGGGTCTCAGCCACCTTTGCGGCTAGTCTTGTCAGCAGCCCGGCCATTGGAGCA
TATCTTTCTGCCAGTTACGGAGACAGCCTCGTTGTGCTGGTGGCCACAGTGGTGGCTCTTCTGGACATCTGCTTCATCTTAGTGGCTGTT
CCAGAATCTCTGCCTGAGAAAATGAGACCGGTTTCCTGGGGAGCTCAGATTTCTTGGAAACAAGCAGACCCTTTTGCGTCGTTGAAGAAA
GTTGGAAAAGATTCTACTGTCTTACTAATCTGCATCACCGTGTTTCTTTCATACCTTCCTGAAGCTGGACAGTATTCAAGTTTTTTTCTC
TATCTCAGGCAGGTCATAGGTTTTGGATCTGTTAAAATTGCAGCATTCATAGCTATGGTAGGAATTCTGTCTATTGTGGCTCAGACGGCC
TTTCTTAGCATCTTGATGAGATCATTAGGAAATAAGAATACTGTCCTCCTTGGCTTGGGCTTCCAGATGCTCCAGTTAGCCTGGTACGGT
TTTGGATCACAGGCCTGGATGATGTGGGCAGCAGGGACCGTGGCTGCCATGTCCAGCATCACGTTTCCGGCAATCAGTGCCCTCGTCTCT
CGGAATGCAGAGTCAGATCAGCAAGGAGTTGCCCAGGGGATCATAACTGGAATAAGAGGACTATGCAATGGCCTGGGGCCAGCACTGTAT
GGCTTCATATTCTACATGTTCCATGTGGAACTGACTGAGTTGGGCCCGAAATTGAATTCTAACAACGTTCCCCTGCAGGGAGCTGTCATC
CCAGGCCCGCCGTTTTTATTTGGGGCATGTATAGTCCTTATGTCTTTTCTGGTTGCCTTATTCATTCCTGAATACAGTAAAGCCAGTGGA
GTTCAAAAACACAGTAACAGCAGCAGCGGCAGCCTGACCAACACCCCAGAACGGGGCAGTGATGAGGACATTGAGCCACTACTGCAAGAC


* Fusion transcript sequences (Full-length transcript).
>In-frame_C9orf3_ENST00000297979_chr9_97741709_+_HIATL1_ENST00000375344_chr9_97177440_+_4898nt
GTCTGCGGAAGTGGTGACCCGTGGGACGCGGCTGAGACAGGAGACTGAAAGGAACCATAATTTGTGACATCAGTTGTTTTCTTTGATAAG
CAGCTATTTATGATTCTGGAAGATTAAGGCAGATAGGAAACCCCATCTGAGATTTTAATAAATCCCTCAAACAATAAACCACATCATGGA
CATACAGCTGGACCCTGCCAGAGATGACCTGCCTCTCATGGCCAACACCAGCCACATACTTGTGAAGCACTATGTACTGGATTTGGATGT
GGATTTTGAAAGTCAAGTCATTGAGGGGACCATAGTGCTTTTCCTCGAGGATGGAAACAGATTCAAGAAACAGAATAGCTCTATTGAGGA
AGCCTGCCAATCAGAATCAAACAAAGCCTGCAAATTTGGGATGCCTGAACCCTGCCATATTCCCGTGACAAATGCAAGGACCTTCTCATC
TGAAATGGAATATAATGATTTTGCAATCTGTAGTAAAGGTGAAAAAGATACTTCTGATAAAGATGGTAACCATGACAACCAGGAACATGC
TTCTGGGATTTCTAGCTCAAAGTACTGCTGTGACACAGGGAATCATGGGAGTGAGGATTTTTTGCTAGTGTTGGACTGCTGTGATTTATC
TGTGTTAAAAGTCGAGGAGGTGGATGTTGCTGCTGTGCCAGGTCTGGAAAAATTTACAAGGTCTCCTGAGCTCACGGTTGTTTCTGAGGA
GTTCAGGAATCAGATTGTACGTGAACTTGTGACTTTGCCTGCAAATCGTTGGAGGGAGCAGTTAGACTATTACGCTCGCTGCAGCCAGGC
TCCTGGCTGTGGGGAACTCCTCTTTGACACTGACACTTGGAGCTTGCAGATAAGGAAGACAGGGGCTCAGACAGCTACTGACTTTCCTCA
TGCTATCAGGATATGGTACAAAACTAAACCTGAAGGGCGATCGGTTACATGGACCTCAGACCAGAGTGGCAGGCCATGTGTTTATACTGT
GGGATCTCCCATAAACAACAGGGCCCTTTTTCCATGCCAGGAGCCACCCGTTGCCATGTCAACATGGCAGGCTACAGTTCGAGCAGCTGC
ATCTTTTGTTGTTTTAATGAGTGGGGAAAATTCTGCCAAACCAACGCAGCTTTGGGAAGAGTGCTCAAGCTGGTATTACTATGTAACTAT
GCCAATGCCAGCCTCCACCTTCACAATTGCAGTGGGATGCTGGACAGAAATGAAGATGGAGACATGGTCATCAAATGATTTGGCAACAGA
GAGACCCTTCTCACCTTCTGAGGCCAACTTCAGGCATGTTGGTGTTTGCAGTCACATGGAATACCCCTGCCGCTTCCAGAATGCTTCTGC
CACCACCCAGGAGATCATTCCTCATCGGGTCTTTGCCCCTGTGTGCCTCACGGGTGCCTGCCAAGAGACCCTTCTGCGGCTGATCCCTCC
TTGCCTCTCAGCAGCACATTCTGTTCTGGGAGCACACCCGTTCTCTCGGCTGGATGTTCTCATCGTCCCTGCCAACTTTCCAAGTCTGGG
GATGGCCAGACCCAGTAAAGACAAAACTGGCCACACAAGTGACTCGGGAGCATCTGTTATCAAGCATGGACTTAATCCGGAGAAGATCTT
CATGCAGGTGCATTATTTAAAGGGCTACTTCCTTCTTCGGTTTCTTGCCAAAAGACTTGGAGATGAAACCTATTTTTCATTTTTAAGAAA
ATTTGTGCACACATTTCATGGACAGCTGATTCTTTCCCAGGATTTCCTTCAAATGCTACTGGAGAACATTCCAGAAGAAAAAAGGCTTGA
GCTGTCTGTTGAAAACATCTACCAAGACTGGCTTGAGAGTTCCGGAATACCAAAGCTACAAGGCTTTGGCCGACCAAGTGTGTACCATGC
TGCTATTGTCATCTTCCTTGAATTCTTTGCGTGGGGCCTGTTGACAACTCCAATGTTGACTGTTCTACATGAAACATTTTCTCAACACAC
ATTCCTCATGAATGGTCTCATTCAAGGTGTAAAGGGCCTGCTCTCTTTTTTGAGTGCCCCACTCATTGGTGCCCTGTCTGATGTGTGGGG
GAGGAAGCCCTTTCTCCTCGGCACTGTATTCTTTACCTGCTTCCCAATCCCACTGATGAGGATCAGCCCATGGTGGTATTTTGCGATGAT
TTCTGTGTCTGGAGTCTTCTCGGTCACGTTTTCTGTTATATTTGCCTATGTAGCTGATGTCACTCAGGAGCACGAGCGAAGTACAGCTTA
TGGATGGGTCTCAGCCACCTTTGCGGCTAGTCTTGTCAGCAGCCCGGCCATTGGAGCATATCTTTCTGCCAGTTACGGAGACAGCCTCGT
TGTGCTGGTGGCCACAGTGGTGGCTCTTCTGGACATCTGCTTCATCTTAGTGGCTGTTCCAGAATCTCTGCCTGAGAAAATGAGACCGGT
TTCCTGGGGAGCTCAGATTTCTTGGAAACAAGCAGACCCTTTTGCGTCGTTGAAGAAAGTTGGAAAAGATTCTACTGTCTTACTAATCTG
CATCACCGTGTTTCTTTCATACCTTCCTGAAGCTGGACAGTATTCAAGTTTTTTTCTCTATCTCAGGCAGGTCATAGGTTTTGGATCTGT
TAAAATTGCAGCATTCATAGCTATGGTAGGAATTCTGTCTATTGTGGCTCAGACGGCCTTTCTTAGCATCTTGATGAGATCATTAGGAAA
TAAGAATACTGTCCTCCTTGGCTTGGGCTTCCAGATGCTCCAGTTAGCCTGGTACGGTTTTGGATCACAGGCCTGGATGATGTGGGCAGC
AGGGACCGTGGCTGCCATGTCCAGCATCACGTTTCCGGCAATCAGTGCCCTCGTCTCTCGGAATGCAGAGTCAGATCAGCAAGGAGTTGC
CCAGGGGATCATAACTGGAATAAGAGGACTATGCAATGGCCTGGGGCCAGCACTGTATGGCTTCATATTCTACATGTTCCATGTGGAACT
GACTGAGTTGGGCCCGAAATTGAATTCTAACAACGTTCCCCTGCAGGGAGCTGTCATCCCAGGCCCGCCGTTTTTATTTGGGGCATGTAT
AGTCCTTATGTCTTTTCTGGTTGCCTTATTCATTCCTGAATACAGTAAAGCCAGTGGAGTTCAAAAACACAGTAACAGCAGCAGCGGCAG
CCTGACCAACACCCCAGAACGGGGCAGTGATGAGGACATTGAGCCACTACTGCAAGACAGCAGCATCTGGGAGCTCTCTTCATTTGAGGA
GCCTGGGAATCAGTGCACTGAGCTGTAAACTCGGCAGAAAGTGGGATTCTGCATACGCCATCTCTGAGAGCCATGGAGGGAGCCACACCC
CTGGTGACTTCATGGTGCTGGATGGGAGACGCTAGCGGCATCCTTCAGGGCCAAGTTTGATAAATACCACCGCCATCATTCTGCTCATCC
TCCTCCTGTTTTTTTTTTTTCTCTTACATTCTTTTTTTTTTTCCTGTTTATACATTAGAACAAGATAAGATTTGAAATACTTCCTTGCAA
ATAATGTGCAACTCCCAAGGTGAAACTCAAATAGAAAAAGTCATCTCTCTGGTAGAAAGGATGGCTTTCCTGTAATGACTATAGAGTAAG
AGTGGCAGCAATCTTTCCATGCCCTTTTCAGCAGAAGGCACAGAACAGTAGCGGGACTGCCATCTCTGGCAAGATTTCAGGTAAAGAATC
TCTTCTTAATTTCTACCTTCCTGTTTCTCTGAATCAGCCCATAGGTGTTGATGAGTGGCCACTCTTAAAGAGTCACTCAGTATCAGGGAT
CTACTGTCTTTGTTCAAAGGTCAAATAAAAACCTAGTCTCCTTTTATTCTACTTTCTATTCTTAGCTAGAATGAAACTCAGCATATATAC
ACTTCTGGACATAATAATATTGAATAGTAATTACCTTTACTAGATGAAAGAAATTTTCATTACAAACTTAAATCATGTAAAACTCAACAA
CTCAGATTCCTGGACCTGGTGTCCTGGTTGGGTCCAAGGTGATTTTACAGAAGAAAAAAACAACTCAAGCATTCTGGTGGCAACATAGAG
ATTGTAGGCTGCTTCTAAGAAAGTTATTAACAATTTGGAAATTCCTAAGTAGGATGAGAGTTAGTAACTGGATACGAGTGAAGTTTATAT
CCAAGTTCAGACTCAAAGGCATTATTATGATTTGCTTCTTCCCATGTCTTCCATGTCCTGCTTCTCAAAGTTTTTCTCATCCATCACACT
CCTGCCTTAACTGCTCTGAGTATGCATTTGTTTTCAATTCATCTTTATTTCAATCTGTTTAACTTTTGAATCGCATGGGAATACGCACAT
TAAGTTCCTTTCTAAAATAAGGTTTTATGAAGCTGAGTTTCACGATAAGTGTCTTGCTATTTTTTGAGATGTTTTATGGACAAAGAAAAC
TTTACAGATTTATATGTATTTTGCTGCACCAGTAAATGGACCATTAACTAGGGCCCACCTTTAACAGAGCACCCCTTTGAAAGTTTTATA
GGTATGAAATATATGTAGATATTTGTAAAGGGTTTTAATTTTTTTTTTTTGATGGGGTGCTGTGTAAATCTTGTATTTATAAATGTAATG
AAGGTATTGACAGAAAAAAATATATACAACTTTTATAAAGGATTGTGTACTGACTGAATACATTTAAAAGAAAATATATTTTGAAACCTG
TTCTGCTATGAACAGAGATAACATATCTTTTTACTATGCTATTGGTTTTTAGGTTAAGCTTCCTAATGCATAATAAATTTACAGTGGTTA
CTTTTATGTCTTGTGTCTTTTTTTTAAAGCAAATAGTATTGCTCTTTTGGGTTCTCTGTTGGGTGGCTTTCAATTAAACTGAGTTGTAAT

>In-frame_C9orf3_ENST00000375315_chr9_97741709_+_HIATL1_ENST00000375344_chr9_97177440_+_5020nt
ATGGACATACAGCTGGACCCTGCCAGAGATGACCTGCCTCTCATGGCCAACACCAGCCACATACTTGTGAAGCACTATGTACTGGATTTG
GATGTGGATTTTGAAAGTCAAGTCATTGAGGGGACCATAGTGCTTTTCCTCGAGGATGGAAACAGATTCAAGAAACAGAATAGCTCTATT
GAGGAAGCCTGCCAATCAGAATCAAACAAAGCCTGCAAATTTGGGATGCCTGAACCCTGCCATATTCCCGTGACAAATGCAAGGACCTTC
TCATCTGAAATGGAATATAATGATTTTGCAATCTGTAGTAAAGGTGAAAAAGATACTTCTGATAAAGATGGTAACCATGACAACCAGGAA
CATGCTTCTGGGATTTCTAGCTCAAAGTACTGCTGTGACACAGGGAATCATGGGAGTGAGGATTTTTTGCTAGTGTTGGACTGCTGTGAT
TTATCTGTGTTAAAAGTCGAGGAGGTGGATGTTGCTGCTGTGCCAGGTCTGGAAAAATTTACAAGGTCTCCTGAGCTCACGGTTGTTTCT
GAGGAGTTCAGGAATCAGATTGTACGTGAACTTGTGACTTTGCCTGCAAATCGTTGGAGGGAGCAGTTAGACTATTACGCTCGCTGCAGC
CAGGCTCCTGGCTGTGGGGAACTCCTCTTTGACACTGACACTTGGAGCTTGCAGATAAGGAAGACAGGGGCTCAGACAGCTACTGACTTT
CCTCATGCTATCAGGATATGGTACAAAACTAAACCTGAAGGGCGATCGGTTACATGGACCTCAGACCAGAGTGGCAGGCCATGTGTTTAT
ACTGTGGGATCTCCCATAAACAACAGGGCCCTTTTTCCATGCCAGGAGCCACCCGTTGCCATGTCAACATGGCAGGCTACAGTTCGAGCA
GCTGCATCTTTTGTTGTTTTAATGAGTGGGGAAAATTCTGCCAAACCAACGCAGCTTTGGGAAGAGTGCTCAAGCTGGTATTACTATGTA
ACTATGCCAATGCCAGCCTCCACCTTCACAATTGCAGTGGGATGCTGGACAGAAATGAAGATGGAGACATGGTCATCAAATGATTTGGCA
ACAGAGAGACCCTTCTCACCTTCTGAGGCCAACTTCAGGCATGTTGGTGTTTGCAGTCACATGGAATACCCCTGCCGCTTCCAGAATGCT
TCTGCCACCACCCAGGAGATCATTCCTCATCGGGTCTTTGCCCCTGTGTGCCTCACGGGTGCCTGCCAAGAGACCCTTCTGCGGCTGATC
CCTCCTTGCCTCTCAGCAGCACATTCTGTTCTGGGAGCACACCCGTTCTCTCGGCTGGATGTTCTCATCGTCCCTGCCAACTTTCCAAGT
CTGGGGATGGCCAGCCCACACATCATGTTCCTCTCTCAGAGCATCTTGACAGGAGGGAACCATCTCTGTGGGACCCGCCTCTGCCATGAA
ATTGCCCATGCCTGGTTTGGCCTAGCCATCGGGGCCCGAGACTGGACGGAGGAGTGGCTGAGTGAAGGCTTCGCCACTCACTTGGAGGAT
GTGTTTTGGGCCACAGCACAGCAGCTGGCCCCCTATGAGGCCCGGGAGCAGCAGGAGCTGAGGGCTTGTCTGCGCTGGCGTCGCCTCCAG
GACGAGATGCAATGCTCCCCCGAGGAGATGCAGGTGTTAAGACCCAGTAAAGACAAAACTGGCCACACAAGTGACTCGGGAGCATCTGTT
ATCAAGCATGGACTTAATCCGGAGAAGATCTTCATGCAGGTGCATTATTTAAAGGGCTACTTCCTTCTTCGGTTTCTTGCCAAAAGACTT
GGAGATGAAACCTATTTTTCATTTTTAAGAAAATTTGTGCACACATTTCATGGACAGCTGATTCTTTCCCAGGATTTCCTTCAAATGCTA
CTGGAGAACATTCCAGAAGAAAAAAGGCTTGAGCTGTCTGTTGAAAACATCTACCAAGACTGGCTTGAGAGTTCCGGAATACCAAAGCTA
CAAGGCTTTGGCCGACCAAGTGTGTACCATGCTGCTATTGTCATCTTCCTTGAATTCTTTGCGTGGGGCCTGTTGACAACTCCAATGTTG
ACTGTTCTACATGAAACATTTTCTCAACACACATTCCTCATGAATGGTCTCATTCAAGGTGTAAAGGGCCTGCTCTCTTTTTTGAGTGCC
CCACTCATTGGTGCCCTGTCTGATGTGTGGGGGAGGAAGCCCTTTCTCCTCGGCACTGTATTCTTTACCTGCTTCCCAATCCCACTGATG
AGGATCAGCCCATGGTGGTATTTTGCGATGATTTCTGTGTCTGGAGTCTTCTCGGTCACGTTTTCTGTTATATTTGCCTATGTAGCTGAT
GTCACTCAGGAGCACGAGCGAAGTACAGCTTATGGATGGGTCTCAGCCACCTTTGCGGCTAGTCTTGTCAGCAGCCCGGCCATTGGAGCA
TATCTTTCTGCCAGTTACGGAGACAGCCTCGTTGTGCTGGTGGCCACAGTGGTGGCTCTTCTGGACATCTGCTTCATCTTAGTGGCTGTT
CCAGAATCTCTGCCTGAGAAAATGAGACCGGTTTCCTGGGGAGCTCAGATTTCTTGGAAACAAGCAGACCCTTTTGCGTCGTTGAAGAAA
GTTGGAAAAGATTCTACTGTCTTACTAATCTGCATCACCGTGTTTCTTTCATACCTTCCTGAAGCTGGACAGTATTCAAGTTTTTTTCTC
TATCTCAGGCAGGTCATAGGTTTTGGATCTGTTAAAATTGCAGCATTCATAGCTATGGTAGGAATTCTGTCTATTGTGGCTCAGACGGCC
TTTCTTAGCATCTTGATGAGATCATTAGGAAATAAGAATACTGTCCTCCTTGGCTTGGGCTTCCAGATGCTCCAGTTAGCCTGGTACGGT
TTTGGATCACAGGCCTGGATGATGTGGGCAGCAGGGACCGTGGCTGCCATGTCCAGCATCACGTTTCCGGCAATCAGTGCCCTCGTCTCT
CGGAATGCAGAGTCAGATCAGCAAGGAGTTGCCCAGGGGATCATAACTGGAATAAGAGGACTATGCAATGGCCTGGGGCCAGCACTGTAT
GGCTTCATATTCTACATGTTCCATGTGGAACTGACTGAGTTGGGCCCGAAATTGAATTCTAACAACGTTCCCCTGCAGGGAGCTGTCATC
CCAGGCCCGCCGTTTTTATTTGGGGCATGTATAGTCCTTATGTCTTTTCTGGTTGCCTTATTCATTCCTGAATACAGTAAAGCCAGTGGA
GTTCAAAAACACAGTAACAGCAGCAGCGGCAGCCTGACCAACACCCCAGAACGGGGCAGTGATGAGGACATTGAGCCACTACTGCAAGAC
AGCAGCATCTGGGAGCTCTCTTCATTTGAGGAGCCTGGGAATCAGTGCACTGAGCTGTAAACTCGGCAGAAAGTGGGATTCTGCATACGC
CATCTCTGAGAGCCATGGAGGGAGCCACACCCCTGGTGACTTCATGGTGCTGGATGGGAGACGCTAGCGGCATCCTTCAGGGCCAAGTTT
GATAAATACCACCGCCATCATTCTGCTCATCCTCCTCCTGTTTTTTTTTTTTCTCTTACATTCTTTTTTTTTTTCCTGTTTATACATTAG
AACAAGATAAGATTTGAAATACTTCCTTGCAAATAATGTGCAACTCCCAAGGTGAAACTCAAATAGAAAAAGTCATCTCTCTGGTAGAAA
GGATGGCTTTCCTGTAATGACTATAGAGTAAGAGTGGCAGCAATCTTTCCATGCCCTTTTCAGCAGAAGGCACAGAACAGTAGCGGGACT
GCCATCTCTGGCAAGATTTCAGGTAAAGAATCTCTTCTTAATTTCTACCTTCCTGTTTCTCTGAATCAGCCCATAGGTGTTGATGAGTGG
CCACTCTTAAAGAGTCACTCAGTATCAGGGATCTACTGTCTTTGTTCAAAGGTCAAATAAAAACCTAGTCTCCTTTTATTCTACTTTCTA
TTCTTAGCTAGAATGAAACTCAGCATATATACACTTCTGGACATAATAATATTGAATAGTAATTACCTTTACTAGATGAAAGAAATTTTC
ATTACAAACTTAAATCATGTAAAACTCAACAACTCAGATTCCTGGACCTGGTGTCCTGGTTGGGTCCAAGGTGATTTTACAGAAGAAAAA
AACAACTCAAGCATTCTGGTGGCAACATAGAGATTGTAGGCTGCTTCTAAGAAAGTTATTAACAATTTGGAAATTCCTAAGTAGGATGAG
AGTTAGTAACTGGATACGAGTGAAGTTTATATCCAAGTTCAGACTCAAAGGCATTATTATGATTTGCTTCTTCCCATGTCTTCCATGTCC
TGCTTCTCAAAGTTTTTCTCATCCATCACACTCCTGCCTTAACTGCTCTGAGTATGCATTTGTTTTCAATTCATCTTTATTTCAATCTGT
TTAACTTTTGAATCGCATGGGAATACGCACATTAAGTTCCTTTCTAAAATAAGGTTTTATGAAGCTGAGTTTCACGATAAGTGTCTTGCT
ATTTTTTGAGATGTTTTATGGACAAAGAAAACTTTACAGATTTATATGTATTTTGCTGCACCAGTAAATGGACCATTAACTAGGGCCCAC
CTTTAACAGAGCACCCCTTTGAAAGTTTTATAGGTATGAAATATATGTAGATATTTGTAAAGGGTTTTAATTTTTTTTTTTTGATGGGGT
GCTGTGTAAATCTTGTATTTATAAATGTAATGAAGGTATTGACAGAAAAAAATATATACAACTTTTATAAAGGATTGTGTACTGACTGAA
TACATTTAAAAGAAAATATATTTTGAAACCTGTTCTGCTATGAACAGAGATAACATATCTTTTTACTATGCTATTGGTTTTTAGGTTAAG
CTTCCTAATGCATAATAAATTTACAGTGGTTACTTTTATGTCTTGTGTCTTTTTTTTAAAGCAAATAGTATTGCTCTTTTGGGTTCTCTG


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FusionGenePPI for C9orf3_HIATL1


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
C9orf3SUN2, LRRC40, ZDHHC17, TUBA4A, SUZ12, TUBB3HIATL1ELAVL1, UNK, TRIM25


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for C9orf3_HIATL1


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for C9orf3_HIATL1


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneC9orf3C0004238Atrial Fibrillation1CTD_human
HgeneC9orf3C0032927Precancerous Conditions1CTD_human
HgeneC9orf3C3495559Juvenile arthritis1CTD_human