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Fusion gene ID: 4783 |
FusionGeneSummary for C19orf10_FAM187B |
Fusion gene summary |
Fusion gene information | Fusion gene name: C19orf10_FAM187B | Fusion gene ID: 4783 | Hgene | Tgene | Gene symbol | C19orf10 | FAM187B | Gene ID | 56005 | 148109 |
Gene name | myeloid derived growth factor | family with sequence similarity 187 member B | |
Synonyms | C19orf10|EUROIMAGE1875335|IL25|IL27|IL27w|R33729_1|SF20 | TMEM162 | |
Cytomap | 19p13.3 | 19q13.12 | |
Type of gene | protein-coding | protein-coding | |
Description | myeloid-derived growth factorUPF0556 protein C19orf10interleukin 27 working designationinterleukin-25stromal cell-derived growth factor SF20 | protein FAM187Btransmembrane protein 162 | |
Modification date | 20180519 | 20180519 | |
UniProtAcc | Q17R55 | ||
Ensembl transtripts involved in fusion gene | ENST00000262947, ENST00000599630, | ENST00000324675, | |
Fusion gene scores | * DoF score | 1 X 1 X 1=1 | 3 X 1 X 3=9 |
# samples | 1 | 3 | |
** MAII score | log2(1/1*10)=3.32192809488736 | log2(3/9*10)=1.73696559416621 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: C19orf10 [Title/Abstract] AND FAM187B [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | C19orf10 | GO:0001938 | positive regulation of endothelial cell proliferation | 25581518 |
Hgene | C19orf10 | GO:0045766 | positive regulation of angiogenesis | 25581518 |
Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | LGG | TCGA-TM-A7CF-01A | C19orf10 | chr19 | 4659943 | - | FAM187B | chr19 | 35716115 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000262947 | ENST00000324675 | C19orf10 | chr19 | 4659943 | - | FAM187B | chr19 | 35716115 | - |
intron-3CDS | ENST00000599630 | ENST00000324675 | C19orf10 | chr19 | 4659943 | - | FAM187B | chr19 | 35716115 | - |
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FusionProtFeatures for C19orf10_FAM187B |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
C19orf10 | FAM187B |
Lectin that binds to various sugars: galactose > mannose= fucose > N-acetylglucosamine > N-acetylgalactosamine(PubMed:10224141). Acts as a chemoattractant, probably involved inthe regulation of cell migration (PubMed:28301481).{ECO:0000269|PubMed:10224141, ECO:0000269|PubMed:28301481}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | >FAM187B | chr19:4659943 | chr19:35716115 | ENST00000324675 | - | 0 | 2 | 357_369 | 240 | 370 | Topological domain | Cytoplasmic |
Tgene | >FAM187B | chr19:4659943 | chr19:35716115 | ENST00000324675 | - | 0 | 2 | 336_356 | 240 | 370 | Transmembrane | Helical |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | FAM187B | chr19:4659943 | chr19:35716115 | ENST00000324675 | - | 0 | 2 | 18_335 | 240 | 370 | Topological domain | Extracellular |
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FusionGeneSequence for C19orf10_FAM187B |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_C19orf10_ENST00000262947_chr19_4659943_-_FAM187B_ENST00000324675_chr19_35716115_-_276aa MAAPSGGWNGVGASLWAALLLGAVALRPAEAVSEPTTVAFDVRPGGVVHSFSHNVGPGDKYTCMFTYASQGGTNEQWQMSLGTSEDHQHF TCTIWRPQGKSYLYFTQFKAEVRGAEIEYAMAYSKAAFERESDVPLKTEEFEVTKTAGPSTGVPTTPPXRGRASSPARTSPPFWTPPPAA GSCRFSSRPSTSASCSRSSWPSSNPPPVWRRWRLSGERTMPSGGRQGRPCGAGRTPCSRGXSWCCSWSPSWPCWGRCSSASTLPRAGEAH |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_C19orf10_ENST00000262947_chr19_4659943_-_FAM187B_ENST00000324675_chr19_35716115_-_830nt ATGGCGGCGCCCAGCGGAGGGTGGAACGGCGTCGGCGCGAGCTTGTGGGCCGCGCTGCTCCTAGGGGCCGTGGCGCTGAGGCCGGCGGAG GCGGTGTCCGAGCCCACGACGGTGGCGTTTGACGTGCGGCCCGGCGGCGTCGTGCATTCCTTCTCCCATAACGTGGGCCCGGGGGACAAA TATACGTGTATGTTCACTTACGCCTCTCAAGGAGGGACCAATGAGCAATGGCAGATGAGTCTGGGGACCAGCGAAGACCACCAGCACTTC ACCTGCACCATCTGGAGGCCCCAGGGGAAGTCCTATCTGTACTTCACACAGTTCAAGGCAGAGGTGCGGGGCGCTGAGATTGAGTACGCC ATGGCCTACTCTAAAGCCGCATTTGAAAGGGAAAGTGATGTCCCTCTGAAAACTGAGGAATTTGAAGTGACCAAAACAGCAGGCCCGTCA ACTGGCGTGCCAACGACACCCCCCTGACGTGGGAGAGCCAGCTCTCCGGCCAGGACTTCACCACCTTTCTGGACCCCTCCACCGGCGGCA GGCAGCTGCAGGTTTTCCAGCCGGCCGTCTACAAGTGCTTCGTGCAGCAGGAGCTCGTGGCCCAGTTCAAACCCGCCGCCAGTCTGGAGA CGCTGGAGGCTCAGTGGAGAGAGAACGATGCCCAGTGGCGGGAGGCAAGGAAGGCCCTGCGGGGCAGGGCGGACTCCGTGCTCAAGGGGC TGAAGCTGGTGCTGCTCGTGGTCACCGTCCTGGCCCTGCTGGGGGCGCTGCTCAAGTGCATCCACCCTTCCCCGGGCAGGAGAAGCACAC |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_C19orf10_ENST00000262947_chr19_4659943_-_FAM187B_ENST00000324675_chr19_35716115_-_891nt GTCTACCCGCCCCTGCCCTGAGGACCCTAGTCCAACATGGCGGCGCCCAGCGGAGGGTGGAACGGCGTCGGCGCGAGCTTGTGGGCCGCG CTGCTCCTAGGGGCCGTGGCGCTGAGGCCGGCGGAGGCGGTGTCCGAGCCCACGACGGTGGCGTTTGACGTGCGGCCCGGCGGCGTCGTG CATTCCTTCTCCCATAACGTGGGCCCGGGGGACAAATATACGTGTATGTTCACTTACGCCTCTCAAGGAGGGACCAATGAGCAATGGCAG ATGAGTCTGGGGACCAGCGAAGACCACCAGCACTTCACCTGCACCATCTGGAGGCCCCAGGGGAAGTCCTATCTGTACTTCACACAGTTC AAGGCAGAGGTGCGGGGCGCTGAGATTGAGTACGCCATGGCCTACTCTAAAGCCGCATTTGAAAGGGAAAGTGATGTCCCTCTGAAAACT GAGGAATTTGAAGTGACCAAAACAGCAGGCCCGTCAACTGGCGTGCCAACGACACCCCCCTGACGTGGGAGAGCCAGCTCTCCGGCCAGG ACTTCACCACCTTTCTGGACCCCTCCACCGGCGGCAGGCAGCTGCAGGTTTTCCAGCCGGCCGTCTACAAGTGCTTCGTGCAGCAGGAGC TCGTGGCCCAGTTCAAACCCGCCGCCAGTCTGGAGACGCTGGAGGCTCAGTGGAGAGAGAACGATGCCCAGTGGCGGGAGGCAAGGAAGG CCCTGCGGGGCAGGGCGGACTCCGTGCTCAAGGGGCTGAAGCTGGTGCTGCTCGTGGTCACCGTCCTGGCCCTGCTGGGGGCGCTGCTCA |
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FusionGenePPI for C19orf10_FAM187B |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
C19orf10 | BAG6, UBQLN4, ATF2, SGTA, MOV10, NXF1, MDM2 | FAM187B | CLGN, VRK2, ATP1A3, CANX, HSPA5, SPPL2B, SLC25A6, RPL23, OSBPL8, TUBA1A, SOAT1, MOSPD2, HSPA8 |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for C19orf10_FAM187B |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for C19orf10_FAM187B |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |