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Fusion gene ID: 4618 |
FusionGeneSummary for C10orf99_UGGT1 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: C10orf99_UGGT1 | Fusion gene ID: 4618 | Hgene | Tgene | Gene symbol | C10orf99 | UGGT1 | Gene ID | 387695 | 56886 |
| Gene name | chromosome 10 open reading frame 99 | UDP-glucose glycoprotein glucosyltransferase 1 | |
| Synonyms | AP-57|AP57|CSBF|GPR15L|UNQ1833 | HUGT1|UGCGL1|UGT1 | |
| Cytomap | 10q23.1 | 2q14.3 | |
| Type of gene | protein-coding | protein-coding | |
| Description | protein GPR15LRLLV1833anti-microbial peptide with 57 amino acid residuesantimicrobial peptide with 57 amino acid residuesantimicrobial peptide-57colon-derived SUSD2 binding factorsecreted protein C10orf99 | UDP-glucose:glycoprotein glucosyltransferase 1UDP--Glc:glycoprotein glucosyltransferaseUDP-glucose ceramide glucosyltransferase-like 1 | |
| Modification date | 20180329 | 20180523 | |
| UniProtAcc | Q9NYU2 | ||
| Ensembl transtripts involved in fusion gene | ENST00000372126, ENST00000472542, | ENST00000375990, ENST00000259253, ENST00000465836, | |
| Fusion gene scores | * DoF score | 1 X 1 X 1=1 | 8 X 8 X 3=192 |
| # samples | 1 | 8 | |
| ** MAII score | log2(1/1*10)=3.32192809488736 | log2(8/192*10)=-1.26303440583379 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: C10orf99 [Title/Abstract] AND UGGT1 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | C10orf99 | GO:0007186 | G-protein coupled receptor signaling pathway | 28900043|28936214 |
| Hgene | C10orf99 | GO:0048247 | lymphocyte chemotaxis | 28936214 |
| Hgene | C10orf99 | GO:0050830 | defense response to Gram-positive bacterium | 25585381 |
| Hgene | C10orf99 | GO:0050832 | defense response to fungus | 25585381 |
| Hgene | C10orf99 | GO:0051782 | negative regulation of cell division | 25351403|25585381 |
| Hgene | C10orf99 | GO:1902807 | negative regulation of cell cycle G1/S phase transition | 25351403 |
| Hgene | C10orf99 | GO:2000404 | regulation of T cell migration | 28900043 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChiTaRS3.1 | AK025416 | C10orf99 | chr10 | 85944737 | + | UGGT1 | chr2 | 128951780 | + |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| 3UTR-3UTR | ENST00000372126 | ENST00000375990 | C10orf99 | chr10 | 85944737 | + | UGGT1 | chr2 | 128951780 | + |
| 3UTR-3UTR | ENST00000372126 | ENST00000259253 | C10orf99 | chr10 | 85944737 | + | UGGT1 | chr2 | 128951780 | + |
| 3UTR-intron | ENST00000372126 | ENST00000465836 | C10orf99 | chr10 | 85944737 | + | UGGT1 | chr2 | 128951780 | + |
| 3UTR-3UTR | ENST00000472542 | ENST00000375990 | C10orf99 | chr10 | 85944737 | + | UGGT1 | chr2 | 128951780 | + |
| 3UTR-3UTR | ENST00000472542 | ENST00000259253 | C10orf99 | chr10 | 85944737 | + | UGGT1 | chr2 | 128951780 | + |
| 3UTR-intron | ENST00000472542 | ENST00000465836 | C10orf99 | chr10 | 85944737 | + | UGGT1 | chr2 | 128951780 | + |
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FusionProtFeatures for C10orf99_UGGT1 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| C10orf99 | UGGT1 |
| Lectin that binds to various sugars: galactose > mannose= fucose > N-acetylglucosamine > N-acetylgalactosamine(PubMed:10224141). Acts as a chemoattractant, probably involved inthe regulation of cell migration (PubMed:28301481).{ECO:0000269|PubMed:10224141, ECO:0000269|PubMed:28301481}. | Recognizes glycoproteins with minor folding defects.Reglucosylates single N-glycans near the misfolded part of theprotein, thus providing quality control for protein folding in theendoplasmic reticulum. Reglucosylated proteins are recognized bycalreticulin for recycling to the endoplasmic reticulum andrefolding or degradation. {ECO:0000269|PubMed:10694380}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for C10orf99_UGGT1 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for C10orf99_UGGT1 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for C10orf99_UGGT1 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for C10orf99_UGGT1 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
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