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Fusion gene ID: 4455 |
FusionGeneSummary for BRPF1_AP3M1 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: BRPF1_AP3M1 | Fusion gene ID: 4455 | Hgene | Tgene | Gene symbol | BRPF1 | AP3M1 | Gene ID | 23774 | 26985 |
| Gene name | bromodomain containing 1 | adaptor related protein complex 3 subunit mu 1 | |
| Synonyms | BRL|BRPF1|BRPF2 | - | |
| Cytomap | 22q13.33 | 10q22.2 | |
| Type of gene | protein-coding | protein-coding | |
| Description | bromodomain-containing protein 1BR140-like proteinbromodomain and PHD finger-containing protein 2 | AP-3 complex subunit mu-1AP-3 adapter complex mu3A subunitadapter-related protein complex 3 mu-1 subunitadaptor related protein complex 3 mu 1 subunitclathrin adaptor complex AP3, mu-3A subunitmu-adaptin 3Amu3A-adaptin | |
| Modification date | 20180519 | 20180519 | |
| UniProtAcc | P55201 | Q9Y2T2 | |
| Ensembl transtripts involved in fusion gene | ENST00000433861, ENST00000424362, ENST00000383829, ENST00000302054, ENST00000457855, ENST00000469066, | ENST00000355264, ENST00000372745, ENST00000487653, | |
| Fusion gene scores | * DoF score | 1 X 1 X 1=1 | 5 X 4 X 4=80 |
| # samples | 1 | 5 | |
| ** MAII score | log2(1/1*10)=3.32192809488736 | log2(5/80*10)=-0.678071905112638 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: BRPF1 [Title/Abstract] AND AP3M1 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | BRPF1 | GO:0043966 | histone H3 acetylation | 16387653 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChiTaRS3.1 | BE082848 | BRPF1 | chr3 | 9776286 | + | AP3M1 | chr10 | 75882158 | + |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| 5CDS-3UTR | ENST00000433861 | ENST00000355264 | BRPF1 | chr3 | 9776286 | + | AP3M1 | chr10 | 75882158 | + |
| 5CDS-intron | ENST00000433861 | ENST00000372745 | BRPF1 | chr3 | 9776286 | + | AP3M1 | chr10 | 75882158 | + |
| 5CDS-intron | ENST00000433861 | ENST00000487653 | BRPF1 | chr3 | 9776286 | + | AP3M1 | chr10 | 75882158 | + |
| 5CDS-3UTR | ENST00000424362 | ENST00000355264 | BRPF1 | chr3 | 9776286 | + | AP3M1 | chr10 | 75882158 | + |
| 5CDS-intron | ENST00000424362 | ENST00000372745 | BRPF1 | chr3 | 9776286 | + | AP3M1 | chr10 | 75882158 | + |
| 5CDS-intron | ENST00000424362 | ENST00000487653 | BRPF1 | chr3 | 9776286 | + | AP3M1 | chr10 | 75882158 | + |
| 5CDS-3UTR | ENST00000383829 | ENST00000355264 | BRPF1 | chr3 | 9776286 | + | AP3M1 | chr10 | 75882158 | + |
| 5CDS-intron | ENST00000383829 | ENST00000372745 | BRPF1 | chr3 | 9776286 | + | AP3M1 | chr10 | 75882158 | + |
| 5CDS-intron | ENST00000383829 | ENST00000487653 | BRPF1 | chr3 | 9776286 | + | AP3M1 | chr10 | 75882158 | + |
| 5CDS-3UTR | ENST00000302054 | ENST00000355264 | BRPF1 | chr3 | 9776286 | + | AP3M1 | chr10 | 75882158 | + |
| 5CDS-intron | ENST00000302054 | ENST00000372745 | BRPF1 | chr3 | 9776286 | + | AP3M1 | chr10 | 75882158 | + |
| 5CDS-intron | ENST00000302054 | ENST00000487653 | BRPF1 | chr3 | 9776286 | + | AP3M1 | chr10 | 75882158 | + |
| 5CDS-3UTR | ENST00000457855 | ENST00000355264 | BRPF1 | chr3 | 9776286 | + | AP3M1 | chr10 | 75882158 | + |
| 5CDS-intron | ENST00000457855 | ENST00000372745 | BRPF1 | chr3 | 9776286 | + | AP3M1 | chr10 | 75882158 | + |
| 5CDS-intron | ENST00000457855 | ENST00000487653 | BRPF1 | chr3 | 9776286 | + | AP3M1 | chr10 | 75882158 | + |
| intron-3UTR | ENST00000469066 | ENST00000355264 | BRPF1 | chr3 | 9776286 | + | AP3M1 | chr10 | 75882158 | + |
| intron-intron | ENST00000469066 | ENST00000372745 | BRPF1 | chr3 | 9776286 | + | AP3M1 | chr10 | 75882158 | + |
| intron-intron | ENST00000469066 | ENST00000487653 | BRPF1 | chr3 | 9776286 | + | AP3M1 | chr10 | 75882158 | + |
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FusionProtFeatures for BRPF1_AP3M1 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| BRPF1 | AP3M1 |
| Component of the MOZ/MORF complex which has a histone H3acetyltransferase activity (PubMed:16387653, PubMed:27939640).Preferentially mediates histone H3-K23 acetylation(PubMed:27939640). Positively regulates the transcription of RUNX1and RUNX2 (PubMed:18794358). {ECO:0000269|PubMed:16387653,ECO:0000269|PubMed:18794358, ECO:0000269|PubMed:27939640}. | Part of the AP-3 complex, an adaptor-related complexwhich is not clathrin-associated. The complex is associated withthe Golgi region as well as more peripheral structures. Itfacilitates the budding of vesicles from the Golgi membrane andmay be directly involved in trafficking to lysosomes. In concertwith the BLOC-1 complex, AP-3 is required to target cargos intovesicles assembled at cell bodies for delivery into neurites andnerve terminals. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for BRPF1_AP3M1 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for BRPF1_AP3M1 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for BRPF1_AP3M1 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for BRPF1_AP3M1 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Tgene | AP3M1 | C0036341 | Schizophrenia | 1 | PSYGENET |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
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