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Fusion gene ID: 4448 |
FusionGeneSummary for BRK1_SLC2A4RG |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: BRK1_SLC2A4RG | Fusion gene ID: 4448 | Hgene | Tgene | Gene symbol | BRK1 | SLC2A4RG | Gene ID | 55845 | 56731 |
| Gene name | BRICK1, SCAR/WAVE actin nucleating complex subunit | SLC2A4 regulator | |
| Synonyms | C3orf10|HSPC300|MDS027|hHBrk1 | GEF|HDBP-1|HDBP1|Si-1-2|Si-1-2-19 | |
| Cytomap | 3p25.3 | 20q13.33 | |
| Type of gene | protein-coding | protein-coding | |
| Description | protein BRICK1haematopoietic stem/progenitor cell protein 300 | SLC2A4 regulatorGLUT4 enhancer factorHuntington's disease gene regulatory region-binding protein 1 | |
| Modification date | 20180523 | 20180519 | |
| UniProtAcc | Q8WUW1 | Q9NR83 | |
| Ensembl transtripts involved in fusion gene | ENST00000530758, ENST00000256463, | ENST00000266077, ENST00000493772, | |
| Fusion gene scores | * DoF score | 5 X 5 X 2=50 | 1 X 1 X 1=1 |
| # samples | 5 | 1 | |
| ** MAII score | log2(5/50*10)=0 | log2(1/1*10)=3.32192809488736 | |
| Context | PubMed: BRK1 [Title/Abstract] AND SLC2A4RG [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | BRK1 | GO:0016601 | Rac protein signal transduction | 21107423 |
| Hgene | BRK1 | GO:0070207 | protein homotrimerization | 18560548 |
| Hgene | BRK1 | GO:2000601 | positive regulation of Arp2/3 complex-mediated actin nucleation | 21107423 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChiTaRS3.1 | BC013687 | BRK1 | chr3 | 10167355 | - | SLC2A4RG | chr20 | 62374830 | + |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| 5CDS-3UTR | ENST00000530758 | ENST00000266077 | BRK1 | chr3 | 10167355 | - | SLC2A4RG | chr20 | 62374830 | + |
| 5CDS-3UTR | ENST00000530758 | ENST00000493772 | BRK1 | chr3 | 10167355 | - | SLC2A4RG | chr20 | 62374830 | + |
| 5CDS-3UTR | ENST00000256463 | ENST00000266077 | BRK1 | chr3 | 10167355 | - | SLC2A4RG | chr20 | 62374830 | + |
| 5CDS-3UTR | ENST00000256463 | ENST00000493772 | BRK1 | chr3 | 10167355 | - | SLC2A4RG | chr20 | 62374830 | + |
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FusionProtFeatures for BRK1_SLC2A4RG |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| BRK1 | SLC2A4RG |
| Involved in regulation of actin and microtubuleorganization. Part of a WAVE complex that activates the Arp2/3complex. As component of the WAVE1 complex, required for BDNF-NTRK2 endocytic trafficking and signaling from early endosomes (Bysimilarity). {ECO:0000250|UniProtKB:Q91VR8,ECO:0000269|PubMed:18560548}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for BRK1_SLC2A4RG |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for BRK1_SLC2A4RG |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for BRK1_SLC2A4RG |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for BRK1_SLC2A4RG |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
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