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Fusion gene ID: 4441 |
FusionGeneSummary for BRIP1_CUEDC1 |
Fusion gene summary |
Fusion gene information | Fusion gene name: BRIP1_CUEDC1 | Fusion gene ID: 4441 | Hgene | Tgene | Gene symbol | BRIP1 | CUEDC1 | Gene ID | 83990 | 404093 |
Gene name | BRCA1 interacting protein C-terminal helicase 1 | CUE domain containing 1 | |
Synonyms | BACH1|FANCJ|OF | - | |
Cytomap | 17q23.2 | 17q22 | |
Type of gene | protein-coding | protein-coding | |
Description | Fanconi anemia group J proteinATP-dependent RNA helicase BRIP1BRCA1-associated C-terminal helicase 1BRCA1-binding helicase-like protein BACH1BRCA1/BRCA2-associated helicase 1 | CUE domain-containing protein 1 | |
Modification date | 20180523 | 20180519 | |
UniProtAcc | Q9BX63 | Q9NWM3 | |
Ensembl transtripts involved in fusion gene | ENST00000259008, ENST00000577598, ENST00000583837, | ENST00000577830, ENST00000407144, ENST00000360238, ENST00000577840, ENST00000578357, | |
Fusion gene scores | * DoF score | 3 X 3 X 1=9 | 5 X 4 X 4=80 |
# samples | 3 | 6 | |
** MAII score | log2(3/9*10)=1.73696559416621 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(6/80*10)=-0.415037499278844 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: BRIP1 [Title/Abstract] AND CUEDC1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | BRIP1 | GO:0006357 | regulation of transcription by RNA polymerase II | 14504288 |
Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | BRCA | TCGA-C8-A275-01A | BRIP1 | chr17 | 59853762 | - | CUEDC1 | chr17 | 55963240 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5CDS-5UTR | ENST00000259008 | ENST00000577830 | BRIP1 | chr17 | 59853762 | - | CUEDC1 | chr17 | 55963240 | - |
5CDS-intron | ENST00000259008 | ENST00000407144 | BRIP1 | chr17 | 59853762 | - | CUEDC1 | chr17 | 55963240 | - |
5CDS-5UTR | ENST00000259008 | ENST00000360238 | BRIP1 | chr17 | 59853762 | - | CUEDC1 | chr17 | 55963240 | - |
5CDS-intron | ENST00000259008 | ENST00000577840 | BRIP1 | chr17 | 59853762 | - | CUEDC1 | chr17 | 55963240 | - |
5CDS-intron | ENST00000259008 | ENST00000578357 | BRIP1 | chr17 | 59853762 | - | CUEDC1 | chr17 | 55963240 | - |
5CDS-5UTR | ENST00000577598 | ENST00000577830 | BRIP1 | chr17 | 59853762 | - | CUEDC1 | chr17 | 55963240 | - |
5CDS-intron | ENST00000577598 | ENST00000407144 | BRIP1 | chr17 | 59853762 | - | CUEDC1 | chr17 | 55963240 | - |
5CDS-5UTR | ENST00000577598 | ENST00000360238 | BRIP1 | chr17 | 59853762 | - | CUEDC1 | chr17 | 55963240 | - |
5CDS-intron | ENST00000577598 | ENST00000577840 | BRIP1 | chr17 | 59853762 | - | CUEDC1 | chr17 | 55963240 | - |
5CDS-intron | ENST00000577598 | ENST00000578357 | BRIP1 | chr17 | 59853762 | - | CUEDC1 | chr17 | 55963240 | - |
5UTR-5UTR | ENST00000583837 | ENST00000577830 | BRIP1 | chr17 | 59853762 | - | CUEDC1 | chr17 | 55963240 | - |
5UTR-intron | ENST00000583837 | ENST00000407144 | BRIP1 | chr17 | 59853762 | - | CUEDC1 | chr17 | 55963240 | - |
5UTR-5UTR | ENST00000583837 | ENST00000360238 | BRIP1 | chr17 | 59853762 | - | CUEDC1 | chr17 | 55963240 | - |
5UTR-intron | ENST00000583837 | ENST00000577840 | BRIP1 | chr17 | 59853762 | - | CUEDC1 | chr17 | 55963240 | - |
5UTR-intron | ENST00000583837 | ENST00000578357 | BRIP1 | chr17 | 59853762 | - | CUEDC1 | chr17 | 55963240 | - |
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FusionProtFeatures for BRIP1_CUEDC1 |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
BRIP1 | CUEDC1 |
DNA-dependent ATPase and 5' to 3' DNA helicase requiredfor the maintenance of chromosomal stability. Acts late in theFanconi anemia pathway, after FANCD2 ubiquitination. Involved inthe repair of DNA double-strand breaks by homologous recombinationin a manner that depends on its association with BRCA1.{ECO:0000269|PubMed:11301010, ECO:0000269|PubMed:14983014,ECO:0000269|PubMed:16116421, ECO:0000269|PubMed:16153896}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for BRIP1_CUEDC1 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for BRIP1_CUEDC1 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
BRIP1 | BRCA1, MLH1, PMS1, PMS2, BLM, TOPBP1, RPA1, BARD1, MMS19, LMNA, HNRNPC, FHL3, POMK, GFOD1, C9orf41, LIPH, VAPB, USP37, CBX3, HIST1H3A, IL17RA, LYPD4, NCAPH2, TULP2, CRTAC1, PDDC1, DOCK5, AVIL, RAD51D, VWA5A, CRYL1, MSH2, FANCD2, BRIP1, MRE11A, RAD50, NBN, SPTA1, POLN | CUEDC1 | IKBKG, NEDD4, NEDD4L, SMURF2, MAP3K1, DUSP19, OIP5, TMEM51, SRPRB, NFKBIA, FAM189A2, ZNF114, ARRDC1, TMEM92, LDLRAD4, SMURF1, TOM1L2, FAM189B, MYO6, TRIM5, ARRDC3, RPL15, MRPL38, TMEM52B, DUSP22, UBC, WBP2, TRIM25 |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for BRIP1_CUEDC1 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for BRIP1_CUEDC1 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | BRIP1 | C1836860 | FANCONI ANEMIA, COMPLEMENTATION GROUP J | 3 | CTD_human;UNIPROT |
Hgene | BRIP1 | C0006142 | Malignant neoplasm of breast | 2 | UNIPROT |
Hgene | BRIP1 | C0015625 | Fanconi Anemia | 1 | CTD_human;ORPHANET |
Hgene | BRIP1 | C0919267 | ovarian neoplasm | 1 | CTD_human |