FusionGDB Logo

Home

Download

Statistics

Examples

Help

Contact

Center for Computational Systems Medicine
leaf

FusionGeneSummary

leaf

FusionProtFeature

leaf

FusionGeneSequence

leaf

FusionGenePPI

leaf

RelatedDrugs

leaf

RelatedDiseases

Fusion gene ID: 433

FusionGeneSummary for ACOX1_PRKAG2

check button Fusion gene summary
Fusion gene informationFusion gene name: ACOX1_PRKAG2
Fusion gene ID: 433
HgeneTgene
Gene symbol

ACOX1

PRKAG2

Gene ID

51

51422

Gene nameacyl-CoA oxidase 1protein kinase AMP-activated non-catalytic subunit gamma 2
SynonymsACOX|PALMCOX|SCOXAAKG|AAKG2|CMH6|H91620p|WPWS
Cytomap

17q25.1

7q36.1

Type of geneprotein-codingprotein-coding
Descriptionperoxisomal acyl-coenzyme A oxidase 1AOXacyl-CoA oxidase 1, palmitoylacyl-CoA oxidase, straight-chainacyl-Coenzyme A oxidase 1, palmitoylpalmitoyl-CoA oxidaseperoxisomal fatty acyl-CoA oxidasestraight-chain acyl-CoA oxidase5'-AMP-activated protein kinase subunit gamma-2AMPK subunit gamma-2protein kinase, AMP-activated, gamma 2 non-catalytic subunit
Modification date2018052320180529
UniProtAcc

Q15067

Q9UGJ0

Ensembl transtripts involved in fusion geneENST00000293217, ENST00000537812, 
ENST00000301608, ENST00000591857, 
ENST00000287878, ENST00000418337, 
ENST00000433631, ENST00000492843, 
ENST00000392801, ENST00000461529, 
Fusion gene scores* DoF score4 X 6 X 5=1208 X 8 X 4=256
# samples 79
** MAII scorelog2(7/120*10)=-0.777607578663552
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(9/256*10)=-1.50814690367033
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: ACOX1 [Title/Abstract] AND PRKAG2 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneACOX1

GO:0006629

lipid metabolic process

8117268

TgenePRKAG2

GO:0006469

negative regulation of protein kinase activity

17255938


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChiTaRS3.1AI766782ACOX1chr17

73939119

+PRKAG2chr7

151352004

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
intron-intronENST00000293217ENST00000287878ACOX1chr17

73939119

+PRKAG2chr7

151352004

+
intron-intronENST00000293217ENST00000418337ACOX1chr17

73939119

+PRKAG2chr7

151352004

+
intron-intronENST00000293217ENST00000433631ACOX1chr17

73939119

+PRKAG2chr7

151352004

+
intron-intronENST00000293217ENST00000492843ACOX1chr17

73939119

+PRKAG2chr7

151352004

+
intron-intronENST00000293217ENST00000392801ACOX1chr17

73939119

+PRKAG2chr7

151352004

+
intron-intronENST00000293217ENST00000461529ACOX1chr17

73939119

+PRKAG2chr7

151352004

+
intron-intronENST00000537812ENST00000287878ACOX1chr17

73939119

+PRKAG2chr7

151352004

+
intron-intronENST00000537812ENST00000418337ACOX1chr17

73939119

+PRKAG2chr7

151352004

+
intron-intronENST00000537812ENST00000433631ACOX1chr17

73939119

+PRKAG2chr7

151352004

+
intron-intronENST00000537812ENST00000492843ACOX1chr17

73939119

+PRKAG2chr7

151352004

+
intron-intronENST00000537812ENST00000392801ACOX1chr17

73939119

+PRKAG2chr7

151352004

+
intron-intronENST00000537812ENST00000461529ACOX1chr17

73939119

+PRKAG2chr7

151352004

+
intron-intronENST00000301608ENST00000287878ACOX1chr17

73939119

+PRKAG2chr7

151352004

+
intron-intronENST00000301608ENST00000418337ACOX1chr17

73939119

+PRKAG2chr7

151352004

+
intron-intronENST00000301608ENST00000433631ACOX1chr17

73939119

+PRKAG2chr7

151352004

+
intron-intronENST00000301608ENST00000492843ACOX1chr17

73939119

+PRKAG2chr7

151352004

+
intron-intronENST00000301608ENST00000392801ACOX1chr17

73939119

+PRKAG2chr7

151352004

+
intron-intronENST00000301608ENST00000461529ACOX1chr17

73939119

+PRKAG2chr7

151352004

+
intron-intronENST00000591857ENST00000287878ACOX1chr17

73939119

+PRKAG2chr7

151352004

+
intron-intronENST00000591857ENST00000418337ACOX1chr17

73939119

+PRKAG2chr7

151352004

+
intron-intronENST00000591857ENST00000433631ACOX1chr17

73939119

+PRKAG2chr7

151352004

+
intron-intronENST00000591857ENST00000492843ACOX1chr17

73939119

+PRKAG2chr7

151352004

+
intron-intronENST00000591857ENST00000392801ACOX1chr17

73939119

+PRKAG2chr7

151352004

+
intron-intronENST00000591857ENST00000461529ACOX1chr17

73939119

+PRKAG2chr7

151352004

+

Top

FusionProtFeatures for ACOX1_PRKAG2


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
ACOX1

Q15067

PRKAG2

Q9UGJ0

AMP/ATP-binding subunit of AMP-activated protein kinase(AMPK), an energy sensor protein kinase that plays a key role inregulating cellular energy metabolism. In response to reduction ofintracellular ATP levels, AMPK activates energy-producing pathwaysand inhibits energy-consuming processes: inhibits protein,carbohydrate and lipid biosynthesis, as well as cell growth andproliferation. AMPK acts via direct phosphorylation of metabolicenzymes, and by longer-term effects via phosphorylation oftranscription regulators. Also acts as a regulator of cellularpolarity by remodeling the actin cytoskeleton; probably byindirectly activating myosin. Gamma non-catalytic subunit mediatesbinding to AMP, ADP and ATP, leading to activate or inhibit AMPK:AMP-binding results in allosteric activation of alpha catalyticsubunit (PRKAA1 or PRKAA2) both by inducing phosphorylation andpreventing dephosphorylation of catalytic subunits. ADP alsostimulates phosphorylation, without stimulating alreadyphosphorylated catalytic subunit. ATP promotes dephosphorylationof catalytic subunit, rendering the AMPK enzyme inactive.{ECO:0000269|PubMed:14722619}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


Top

FusionGeneSequence for ACOX1_PRKAG2


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

Top

FusionGenePPI for ACOX1_PRKAG2


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


Top

RelatedDrugs for ACOX1_PRKAG2


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

Top

RelatedDiseases for ACOX1_PRKAG2


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneACOX1C2239176Liver carcinoma2CTD_human
HgeneACOX1C0011853Diabetes Mellitus, Experimental1CTD_human
HgeneACOX1C1849678Peroxisomal ACYL-COA oxidase deficiency1CTD_human;ORPHANET;UNIPROT
TgenePRKAG2C0043202Wolff-Parkinson-White Syndrome4CTD_human;HPO;UNIPROT
TgenePRKAG2C1833236CARDIOMYOPATHY, FAMILIAL HYPERTROPHIC, 6 (disorder)3CTD_human;UNIPROT
TgenePRKAG2C1849813Glycogen Storage Disease of Heart, Lethal Congenital1CTD_human;ORPHANET;UNIPROT