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Fusion gene ID: 425 |
FusionGeneSummary for ACOT7_NPHP4 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: ACOT7_NPHP4 | Fusion gene ID: 425 | Hgene | Tgene | Gene symbol | ACOT7 | NPHP4 | Gene ID | 11332 | 261734 |
| Gene name | acyl-CoA thioesterase 7 | nephrocystin 4 | |
| Synonyms | ACH1|ACT|BACH|CTE-II|LACH|LACH1|hBACH | POC10|SLSN4 | |
| Cytomap | 1p36.31 | 1p36.31 | |
| Type of gene | protein-coding | protein-coding | |
| Description | cytosolic acyl coenzyme A thioester hydrolaseCTE-IIaacyl-CoA thioesterase 2acyl-CoA thioesterase, long chainbrain acyl-CoA hydrolaselong chain acyl-CoA thioester hydrolase | nephrocystin-4POC10 centriolar protein homolognephroretinin | |
| Modification date | 20180523 | 20180519 | |
| UniProtAcc | O00154 | O75161 | |
| Ensembl transtripts involved in fusion gene | ENST00000608083, ENST00000377855, ENST00000545482, ENST00000361521, ENST00000377842, ENST00000377845, ENST00000541130, | ENST00000478423, ENST00000378156, | |
| Fusion gene scores | * DoF score | 10 X 6 X 8=480 | 3 X 3 X 2=18 |
| # samples | 12 | 3 | |
| ** MAII score | log2(12/480*10)=-2 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(3/18*10)=0.736965594166206 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
| Context | PubMed: ACOT7 [Title/Abstract] AND NPHP4 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | ACOT7 | GO:0015937 | coenzyme A biosynthetic process | 10578051 |
| Hgene | ACOT7 | GO:0036114 | medium-chain fatty-acyl-CoA catabolic process | 10578051 |
| Hgene | ACOT7 | GO:0036116 | long-chain fatty-acyl-CoA catabolic process | 10578051 |
| Hgene | ACOT7 | GO:0051792 | medium-chain fatty acid biosynthetic process | 10578051 |
| Hgene | ACOT7 | GO:1900535 | palmitic acid biosynthetic process | 10578051 |
| Tgene | NPHP4 | GO:0090090 | negative regulation of canonical Wnt signaling pathway | 22654112 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | LD | SKCM | TCGA-FS-A4F0-06A | ACOT7 | chr1 | 6409809 | - | NPHP4 | chr1 | 5993389 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| 5CDS-5UTR | ENST00000608083 | ENST00000478423 | ACOT7 | chr1 | 6409809 | - | NPHP4 | chr1 | 5993389 | - |
| 5CDS-5UTR | ENST00000608083 | ENST00000378156 | ACOT7 | chr1 | 6409809 | - | NPHP4 | chr1 | 5993389 | - |
| 5CDS-5UTR | ENST00000377855 | ENST00000478423 | ACOT7 | chr1 | 6409809 | - | NPHP4 | chr1 | 5993389 | - |
| 5CDS-5UTR | ENST00000377855 | ENST00000378156 | ACOT7 | chr1 | 6409809 | - | NPHP4 | chr1 | 5993389 | - |
| intron-5UTR | ENST00000545482 | ENST00000478423 | ACOT7 | chr1 | 6409809 | - | NPHP4 | chr1 | 5993389 | - |
| intron-5UTR | ENST00000545482 | ENST00000378156 | ACOT7 | chr1 | 6409809 | - | NPHP4 | chr1 | 5993389 | - |
| 5CDS-5UTR | ENST00000361521 | ENST00000478423 | ACOT7 | chr1 | 6409809 | - | NPHP4 | chr1 | 5993389 | - |
| 5CDS-5UTR | ENST00000361521 | ENST00000378156 | ACOT7 | chr1 | 6409809 | - | NPHP4 | chr1 | 5993389 | - |
| 5CDS-5UTR | ENST00000377842 | ENST00000478423 | ACOT7 | chr1 | 6409809 | - | NPHP4 | chr1 | 5993389 | - |
| 5CDS-5UTR | ENST00000377842 | ENST00000378156 | ACOT7 | chr1 | 6409809 | - | NPHP4 | chr1 | 5993389 | - |
| 5CDS-5UTR | ENST00000377845 | ENST00000478423 | ACOT7 | chr1 | 6409809 | - | NPHP4 | chr1 | 5993389 | - |
| 5CDS-5UTR | ENST00000377845 | ENST00000378156 | ACOT7 | chr1 | 6409809 | - | NPHP4 | chr1 | 5993389 | - |
| 5CDS-5UTR | ENST00000541130 | ENST00000478423 | ACOT7 | chr1 | 6409809 | - | NPHP4 | chr1 | 5993389 | - |
| 5CDS-5UTR | ENST00000541130 | ENST00000378156 | ACOT7 | chr1 | 6409809 | - | NPHP4 | chr1 | 5993389 | - |
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FusionProtFeatures for ACOT7_NPHP4 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| ACOT7 | NPHP4 |
| Involved in the organization of apical junctions; thefunction is proposed to implicate a NPHP1-4-8 module(PubMed:19755384, PubMed:21565611). Does not seem to be strictlyrequired for ciliogenesis (PubMed:21565611). Required for buildingfunctional cilia. Involved in the organization of the subapicalactin network in multiciliated epithelial cells. Seems to recruitINT to basal bodies of motile cilia which subsequently interactswith actin-modifying proteins such as DAAM1 (By similarity). Incooperation with INVS may downregulate the canonical Wnt pathwayand promote the Wnt-PCP pathway by regulating expression andsubcellular location of disheveled proteins. Stabilizes proteinlevels of JADE1 and promotes its translocation to the nucleusleading to cooperative inhibition of canonical Wnt signaling(PubMed:21498478, PubMed:22654112). Acts as negative regulator ofthe hippo pathway by association with LATS1 and modifying LATS1-dependent phosphorylation and localization of WWTR1/TAZ(PubMed:21555462). {ECO:0000250|UniProtKB:B0DOB4,ECO:0000250|UniProtKB:P59240, ECO:0000269|PubMed:21498478,ECO:0000269|PubMed:21555462, ECO:0000269|PubMed:21565611,ECO:0000269|PubMed:22654112, ECO:0000305|PubMed:19755384}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for ACOT7_NPHP4 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for ACOT7_NPHP4 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| ACOT7 | TERF1, TINF2, POT1, CDK2, ATXN1, ATXN1L, GDI1, NDRG1, NHLRC2, TNFAIP8, ALDH9A1, GAPDH, PDIA3, RCC2, SORD, CAMK2B, CRYAB, MAGEA6, UBQLN1, THAP1, DHRS4L2, CAB39L, RELT, PCBP1, NTRK1, FOXI2, ATP5A1, PHYHIPL, DUSP19, DUSP4, BTRC, PKNOX1, RABGAP1L, HSD17B10, SOD1, LMNA | NPHP4 | NPHP1, LATS1, CEP164, DDB1, RPGRIP1, JADE1, SKAP1, RPGRIP1L, CEP128, CEP89, AIP, CACYBP, HSP90AA1, HSP90AB1, HSPA1B, HSPA1L, HSPA2, INVS, IRS4, NUDC, NUDCD2, NUDCD3, RPAP3, TUBB, TUBB2B, TUBB4B, BAG2, DNAJC7, FKBP4, HSPA6, HSPA8, PIH1D1, STIP1, SUGT1, TTC4, TUBAL3, RPGR, PPP4R2, EGFR, SSSCA1, TUBB1, GKAP1, RPP25L, TEFM, CLUH, ECT2, NEK4, RAF1 |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for ACOT7_NPHP4 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for ACOT7_NPHP4 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Tgene | NPHP4 | C1847013 | NEPHRONOPHTHISIS 4 | 6 | CTD_human;UNIPROT |
| Tgene | NPHP4 | C1846979 | SENIOR-LOKEN SYNDROME 4 | 3 | CTD_human;UNIPROT |
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