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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 42070

FusionGeneSummary for WRAP53_SLC44A2

check button Fusion gene summary
Fusion gene informationFusion gene name: WRAP53_SLC44A2
Fusion gene ID: 42070
HgeneTgene
Gene symbol

WRAP53

SLC44A2

Gene ID

55135

57153

Gene nameWD repeat containing antisense to TP53solute carrier family 44 member 2
SynonymsDKCB3|TCAB1|WDR79CTL2|PP1292
Cytomap

17p13.1

19p13.2

Type of geneprotein-codingprotein-coding
Descriptiontelomerase Cajal body protein 1WD repeat-containing protein 79WD repeat-containing protein WRAP53WD40 protein Wrap53WD40 repeat-containing protein antisense to TP53WD40 repeat-containing protein encoding RNA antisense to p53choline transporter-like protein 2solute carrier family 44 (choline transporter), member 2testicular tissue protein Li 47
Modification date2018051920180525
UniProtAcc

Q9BUR4

Q8IWA5

Ensembl transtripts involved in fusion geneENST00000431639, ENST00000316024, 
ENST00000457584, ENST00000396463, 
ENST00000534050, 
ENST00000407327, 
ENST00000335757, ENST00000586078, 
ENST00000588214, 
Fusion gene scores* DoF score4 X 3 X 4=485 X 5 X 7=175
# samples 410
** MAII scorelog2(4/48*10)=-0.263034405833794
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(10/175*10)=-0.807354922057604
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: WRAP53 [Title/Abstract] AND SLC44A2 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneWRAP53

GO:0007004

telomere maintenance via telomerase

23685356

HgeneWRAP53

GO:0051973

positive regulation of telomerase activity

19179534|23685356


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGALDBRCATCGA-AR-A256-01AWRAP53chr17

7592640

+SLC44A2chr19

10746999

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
Frame-shitENST00000431639ENST00000407327WRAP53chr17

7592640

+SLC44A2chr19

10746999

+
Frame-shitENST00000431639ENST00000335757WRAP53chr17

7592640

+SLC44A2chr19

10746999

+
Frame-shitENST00000431639ENST00000586078WRAP53chr17

7592640

+SLC44A2chr19

10746999

+
5CDS-intronENST00000431639ENST00000588214WRAP53chr17

7592640

+SLC44A2chr19

10746999

+
Frame-shitENST00000316024ENST00000407327WRAP53chr17

7592640

+SLC44A2chr19

10746999

+
Frame-shitENST00000316024ENST00000335757WRAP53chr17

7592640

+SLC44A2chr19

10746999

+
Frame-shitENST00000316024ENST00000586078WRAP53chr17

7592640

+SLC44A2chr19

10746999

+
5CDS-intronENST00000316024ENST00000588214WRAP53chr17

7592640

+SLC44A2chr19

10746999

+
Frame-shitENST00000457584ENST00000407327WRAP53chr17

7592640

+SLC44A2chr19

10746999

+
Frame-shitENST00000457584ENST00000335757WRAP53chr17

7592640

+SLC44A2chr19

10746999

+
Frame-shitENST00000457584ENST00000586078WRAP53chr17

7592640

+SLC44A2chr19

10746999

+
5CDS-intronENST00000457584ENST00000588214WRAP53chr17

7592640

+SLC44A2chr19

10746999

+
Frame-shitENST00000396463ENST00000407327WRAP53chr17

7592640

+SLC44A2chr19

10746999

+
Frame-shitENST00000396463ENST00000335757WRAP53chr17

7592640

+SLC44A2chr19

10746999

+
Frame-shitENST00000396463ENST00000586078WRAP53chr17

7592640

+SLC44A2chr19

10746999

+
5CDS-intronENST00000396463ENST00000588214WRAP53chr17

7592640

+SLC44A2chr19

10746999

+
intron-3CDSENST00000534050ENST00000407327WRAP53chr17

7592640

+SLC44A2chr19

10746999

+
intron-3CDSENST00000534050ENST00000335757WRAP53chr17

7592640

+SLC44A2chr19

10746999

+
intron-3CDSENST00000534050ENST00000586078WRAP53chr17

7592640

+SLC44A2chr19

10746999

+
intron-intronENST00000534050ENST00000588214WRAP53chr17

7592640

+SLC44A2chr19

10746999

+

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FusionProtFeatures for WRAP53_SLC44A2


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
WRAP53

Q9BUR4

SLC44A2

Q8IWA5

Essential component of the telomerase holoenzymecomplex, a ribonucleoprotein complex essential for the replicationof chromosome termini that elongates telomeres in most eukaryotes.In the telomerase holoenzyme complex, it controls telomeraselocalization to Cajal body. Required for delivery of TERC totelomeres during S phase and for telomerase activity. Binds smallCajal body RNAs (scaRNAs). The mRNA encoding this protein plays acritical role in the regulation of p53 expression at the post-transcriptional level; it is involved both in maintaining basalp53 mRNA levels and in p53 induction upon DNA damage.{ECO:0000269|PubMed:19179534, ECO:0000269|PubMed:19250907}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for WRAP53_SLC44A2


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for WRAP53_SLC44A2


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
WRAP53PRPF4, PTGES3, XPC, WAPAL, SNRPC, USP11, TNPO1, RBBP7, GAR1, FAM43A, MDC1, RNF8, H2AFX, HNRNPU, ZFHX3, CCT6A, DKC1, MYBPH, NDUFV3, TCP1, CCT3, STK24, CCT7, CCT4, CCT2, CCT8, CCT5, PRPF38B, PTPN1, RAP1B, RXRB, POLG2, CNTROB, MRPL14, KIAA1683, LYPD4, CRYL1, ARHGAP25, FAM46ASLC44A2RP2


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for WRAP53_SLC44A2


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for WRAP53_SLC44A2


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneWRAP53C3151442DYSKERATOSIS CONGENITA, AUTOSOMAL RECESSIVE, 31UNIPROT
TgeneSLC44A2C0023893Liver Cirrhosis, Experimental1CTD_human