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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 41855

FusionGeneSummary for WDR47_CCDC180

check button Fusion gene summary
Fusion gene informationFusion gene name: WDR47_CCDC180
Fusion gene ID: 41855
HgeneTgene
Gene symbol

WDR47

CCDC180

Gene ID

22911

100499483

Gene nameWD repeat domain 47coiled-coil domain containing 180
Synonyms-C9orf174
Cytomap

1p13.3

9q22.33

Type of geneprotein-codingprotein-coding
DescriptionWD repeat-containing protein 47nemitinneuronal enriched MAP-interacting proteincoiled-coil domain-containing protein 180Behcet's Disease Associated Gene 1
Modification date2018051920180408
UniProtAcc

O94967

Q9P1Z9

Ensembl transtripts involved in fusion geneENST00000400794, ENST00000361054, 
ENST00000369962, ENST00000369965, 
ENST00000357672, 
ENST00000375205, 
ENST00000411667, ENST00000375202, 
ENST00000357054, ENST00000395220, 
ENST00000529487, ENST00000460482, 
Fusion gene scores* DoF score4 X 5 X 4=801 X 1 X 1=1
# samples 51
** MAII scorelog2(5/80*10)=-0.678071905112638
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(1/1*10)=3.32192809488736
Context

PubMed: WDR47 [Title/Abstract] AND CCDC180 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChiTaRS3.1AI923779WDR47chr1

109535388

-CCDC180chr9

100092682

-
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
intron-intronENST00000400794ENST00000375205WDR47chr1

109535388

-CCDC180chr9

100092682

-
intron-intronENST00000400794ENST00000411667WDR47chr1

109535388

-CCDC180chr9

100092682

-
intron-intronENST00000400794ENST00000375202WDR47chr1

109535388

-CCDC180chr9

100092682

-
intron-intronENST00000400794ENST00000357054WDR47chr1

109535388

-CCDC180chr9

100092682

-
intron-3UTRENST00000400794ENST00000395220WDR47chr1

109535388

-CCDC180chr9

100092682

-
intron-3UTRENST00000400794ENST00000529487WDR47chr1

109535388

-CCDC180chr9

100092682

-
intron-3UTRENST00000400794ENST00000460482WDR47chr1

109535388

-CCDC180chr9

100092682

-
intron-intronENST00000361054ENST00000375205WDR47chr1

109535388

-CCDC180chr9

100092682

-
intron-intronENST00000361054ENST00000411667WDR47chr1

109535388

-CCDC180chr9

100092682

-
intron-intronENST00000361054ENST00000375202WDR47chr1

109535388

-CCDC180chr9

100092682

-
intron-intronENST00000361054ENST00000357054WDR47chr1

109535388

-CCDC180chr9

100092682

-
intron-3UTRENST00000361054ENST00000395220WDR47chr1

109535388

-CCDC180chr9

100092682

-
intron-3UTRENST00000361054ENST00000529487WDR47chr1

109535388

-CCDC180chr9

100092682

-
intron-3UTRENST00000361054ENST00000460482WDR47chr1

109535388

-CCDC180chr9

100092682

-
intron-intronENST00000369962ENST00000375205WDR47chr1

109535388

-CCDC180chr9

100092682

-
intron-intronENST00000369962ENST00000411667WDR47chr1

109535388

-CCDC180chr9

100092682

-
intron-intronENST00000369962ENST00000375202WDR47chr1

109535388

-CCDC180chr9

100092682

-
intron-intronENST00000369962ENST00000357054WDR47chr1

109535388

-CCDC180chr9

100092682

-
intron-3UTRENST00000369962ENST00000395220WDR47chr1

109535388

-CCDC180chr9

100092682

-
intron-3UTRENST00000369962ENST00000529487WDR47chr1

109535388

-CCDC180chr9

100092682

-
intron-3UTRENST00000369962ENST00000460482WDR47chr1

109535388

-CCDC180chr9

100092682

-
intron-intronENST00000369965ENST00000375205WDR47chr1

109535388

-CCDC180chr9

100092682

-
intron-intronENST00000369965ENST00000411667WDR47chr1

109535388

-CCDC180chr9

100092682

-
intron-intronENST00000369965ENST00000375202WDR47chr1

109535388

-CCDC180chr9

100092682

-
intron-intronENST00000369965ENST00000357054WDR47chr1

109535388

-CCDC180chr9

100092682

-
intron-3UTRENST00000369965ENST00000395220WDR47chr1

109535388

-CCDC180chr9

100092682

-
intron-3UTRENST00000369965ENST00000529487WDR47chr1

109535388

-CCDC180chr9

100092682

-
intron-3UTRENST00000369965ENST00000460482WDR47chr1

109535388

-CCDC180chr9

100092682

-
intron-intronENST00000357672ENST00000375205WDR47chr1

109535388

-CCDC180chr9

100092682

-
intron-intronENST00000357672ENST00000411667WDR47chr1

109535388

-CCDC180chr9

100092682

-
intron-intronENST00000357672ENST00000375202WDR47chr1

109535388

-CCDC180chr9

100092682

-
intron-intronENST00000357672ENST00000357054WDR47chr1

109535388

-CCDC180chr9

100092682

-
intron-3UTRENST00000357672ENST00000395220WDR47chr1

109535388

-CCDC180chr9

100092682

-
intron-3UTRENST00000357672ENST00000529487WDR47chr1

109535388

-CCDC180chr9

100092682

-
intron-3UTRENST00000357672ENST00000460482WDR47chr1

109535388

-CCDC180chr9

100092682

-

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FusionProtFeatures for WDR47_CCDC180


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
WDR47

O94967

CCDC180

Q9P1Z9


check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for WDR47_CCDC180


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for WDR47_CCDC180


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for WDR47_CCDC180


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for WDR47_CCDC180


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource