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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 4162

FusionGeneSummary for BICD1_LOH12CR1

check button Fusion gene summary
Fusion gene informationFusion gene name: BICD1_LOH12CR1
Fusion gene ID: 4162
HgeneTgene
Gene symbol

BICD1

LOH12CR1

Gene ID

636

118426

Gene nameBICD cargo adaptor 1BLOC-1 related complex subunit 5
SynonymsBICD|bic-D 1LOH12CR1|LOH1CR12
Cytomap

12p11.21

12p13.2

Type of geneprotein-codingprotein-coding
Descriptionprotein bicaudal D homolog 1bicaudal D homolog 1cytoskeleton-like bicaudal D protein homolog 1BLOC-1-related complex subunit 5loss of heterozygosity 12 chromosomal region 1 proteinloss of heterozygosity, 12, chromosomal region 1myristoylated lysosomal proteinmyrlysin
Modification date2018052420180519
UniProtAcc

Q96G01

Ensembl transtripts involved in fusion geneENST00000548411, ENST00000281474, 
ENST00000551848, ENST00000550207, 
ENST00000551086, 
ENST00000542728, 
ENST00000314565, ENST00000298571, 
Fusion gene scores* DoF score11 X 8 X 7=6163 X 2 X 3=18
# samples 123
** MAII scorelog2(12/616*10)=-2.35989594508638
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(3/18*10)=0.736965594166206
effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs).
DoF>8 and MAII>0
Context

PubMed: BICD1 [Title/Abstract] AND LOH12CR1 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneBICD1

GO:0033365

protein localization to organelle

12447383|20089649


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGARVTGCTTCGA-2G-AAKD-01ABICD1chr12

32260478

+LOH12CR1chr12

12588562

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
Frame-shiftENST00000548411ENST00000542728BICD1chr12

32260478

+LOH12CR1chr12

12588562

+
Frame-shiftENST00000548411ENST00000314565BICD1chr12

32260478

+LOH12CR1chr12

12588562

+
Frame-shiftENST00000548411ENST00000298571BICD1chr12

32260478

+LOH12CR1chr12

12588562

+
Frame-shiftENST00000281474ENST00000542728BICD1chr12

32260478

+LOH12CR1chr12

12588562

+
Frame-shiftENST00000281474ENST00000314565BICD1chr12

32260478

+LOH12CR1chr12

12588562

+
Frame-shiftENST00000281474ENST00000298571BICD1chr12

32260478

+LOH12CR1chr12

12588562

+
In-frameENST00000551848ENST00000542728BICD1chr12

32260478

+LOH12CR1chr12

12588562

+
In-frameENST00000551848ENST00000314565BICD1chr12

32260478

+LOH12CR1chr12

12588562

+
In-frameENST00000551848ENST00000298571BICD1chr12

32260478

+LOH12CR1chr12

12588562

+
Frame-shiftENST00000550207ENST00000542728BICD1chr12

32260478

+LOH12CR1chr12

12588562

+
Frame-shiftENST00000550207ENST00000314565BICD1chr12

32260478

+LOH12CR1chr12

12588562

+
Frame-shiftENST00000550207ENST00000298571BICD1chr12

32260478

+LOH12CR1chr12

12588562

+
Frame-shiftENST00000551086ENST00000542728BICD1chr12

32260478

+LOH12CR1chr12

12588562

+
Frame-shiftENST00000551086ENST00000314565BICD1chr12

32260478

+LOH12CR1chr12

12588562

+
Frame-shiftENST00000551086ENST00000298571BICD1chr12

32260478

+LOH12CR1chr12

12588562

+

Top

FusionProtFeatures for BICD1_LOH12CR1


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
BICD1

Q96G01

LOH12CR1

Regulates coat complex coatomer protein I (COPI)-independent Golgi-endoplasmic reticulum transport by recruitingthe dynein-dynactin motor complex. Lectin that binds to various sugars: galactose > mannose= fucose > N-acetylglucosamine > N-acetylgalactosamine(PubMed:10224141). Acts as a chemoattractant, probably involved inthe regulation of cell migration (PubMed:28301481).{ECO:0000269|PubMed:10224141, ECO:0000269|PubMed:28301481}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


Top

FusionGeneSequence for BICD1_LOH12CR1


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.
>In-frame_BICD1_ENST00000551848_chr12_32260478_+_LOH12CR1_ENST00000542728_chr12_12588562_+_618aa
MAAEEVLQTVDHYKTEIERLTKELTETTHEKIQAAEYGLVVLEEKLTLKQQYDELEAEYDSLKQELEQLKEVSCLSPLPFLALTPPTRKA
HSSXSRSHKGGDXKDCFFFXGPLLVREDXKSPLFPPPREKLPKKXIYKLEFGRQWLFGLRGREISKSHQVSALXDDIQVGWNVXIKLLKT
AVISNPGFSDNFVVHKSDEVCAXGPTISGFRLCGTSAFLWMXPLLGERGNSSPIPFDKGXAIFILLGFSHSCHWAAEEKQLCWVIPLPXF
HLGARLGHVQVLXGHPDXKKLNSPTNSLKEWCISNTWVVLHFKXGSSGXNDIFIKPEYQKWVMYNVSLVFWYLASFKACRMYGRKQXTCF
DFLSVTLKNIHIVXVTRSFLSDSXGTMGSKXPLTNLNVIYTPFLCVKSLFLGAYXHLNVNYCLAYNIKNLLFILCCYSXKMXFMTYXINL
PSNLVCNMVSIYTFRYVLFLFGCLSTKKXMYYLXLKIPRLLSGQTSPTNAKLEKLDSQQVLQLCLRYQDHLHQCAEAVAFDQNALVKRIK

>In-frame_BICD1_ENST00000551848_chr12_32260478_+_LOH12CR1_ENST00000314565_chr12_12588562_+_618aa
MAAEEVLQTVDHYKTEIERLTKELTETTHEKIQAAEYGLVVLEEKLTLKQQYDELEAEYDSLKQELEQLKEVSCLSPLPFLALTPPTRKA
HSSXSRSHKGGDXKDCFFFXGPLLVREDXKSPLFPPPREKLPKKXIYKLEFGRQWLFGLRGREISKSHQVSALXDDIQVGWNVXIKLLKT
AVISNPGFSDNFVVHKSDEVCAXGPTISGFRLCGTSAFLWMXPLLGERGNSSPIPFDKGXAIFILLGFSHSCHWAAEEKQLCWVIPLPXF
HLGARLGHVQVLXGHPDXKKLNSPTNSLKEWCISNTWVVLHFKXGSSGXNDIFIKPEYQKWVMYNVSLVFWYLASFKACRMYGRKQXTCF
DFLSVTLKNIHIVXVTRSFLSDSXGTMGSKXPLTNLNVIYTPFLCVKSLFLGAYXHLNVNYCLAYNIKNLLFILCCYSXKMXFMTYXINL
PSNLVCNMVSIYTFRYVLFLFGCLSTKKXMYYLXLKIPRLLSGQTSPTNAKLEKLDSQQVLQLCLRYQDHLHQCAEAVAFDQNALVKRIK

>In-frame_BICD1_ENST00000551848_chr12_32260478_+_LOH12CR1_ENST00000298571_chr12_12588562_+_618aa
MAAEEVLQTVDHYKTEIERLTKELTETTHEKIQAAEYGLVVLEEKLTLKQQYDELEAEYDSLKQELEQLKEVSCLSPLPFLALTPPTRKA
HSSXSRSHKGGDXKDCFFFXGPLLVREDXKSPLFPPPREKLPKKXIYKLEFGRQWLFGLRGREISKSHQVSALXDDIQVGWNVXIKLLKT
AVISNPGFSDNFVVHKSDEVCAXGPTISGFRLCGTSAFLWMXPLLGERGNSSPIPFDKGXAIFILLGFSHSCHWAAEEKQLCWVIPLPXF
HLGARLGHVQVLXGHPDXKKLNSPTNSLKEWCISNTWVVLHFKXGSSGXNDIFIKPEYQKWVMYNVSLVFWYLASFKACRMYGRKQXTCF
DFLSVTLKNIHIVXVTRSFLSDSXGTMGSKXPLTNLNVIYTPFLCVKSLFLGAYXHLNVNYCLAYNIKNLLFILCCYSXKMXFMTYXINL
PSNLVCNMVSIYTFRYVLFLFGCLSTKKXMYYLXLKIPRLLSGQTSPTNAKLEKLDSQQVLQLCLRYQDHLHQCAEAVAFDQNALVKRIK


* Fusion transcript sequences (only coding sequence (CDS) region).
>In-frame_BICD1_ENST00000551848_chr12_32260478_+_LOH12CR1_ENST00000542728_chr12_12588562_+_1854nt
ATGGCCGCAGAAGAGGTATTGCAGACGGTGGACCATTATAAGACTGAGATAGAGAGGCTAACCAAGGAGCTCACGGAGACCACCCACGAG
AAGATCCAGGCTGCCGAGTACGGGCTGGTGGTGCTGGAGGAGAAGCTGACCCTCAAACAGCAGTATGATGAACTGGAGGCTGAGTACGAC
AGCCTCAAACAGGAGCTGGAGCAGCTCAAAGAGGTGAGTTGCCTGTCACCTCTCCCTTTCCTGGCCCTCACTCCCCCCACCCGCAAGGCC
CACTCATCATGATCAAGAAGTCATAAAGGAGGTGATTGAAAGGACTGTTTTTTCTTCTAGGGCCCTTTGTTGGTAAGAGAAGATTGAAAG
AGTCCATTGTTTCCTCCCCCAAGAGAAAAATTGCCTAAGAAATGAATATATAAGCTGGAATTTGGGAGGCAATGGCTGTTTGGCCTGCGG
GGGAGGGAGATTAGTAAGAGTCATCAAGTCTCAGCACTCTAAGACGACATTCAAGTGGGTTGGAATGTATAAATCAAACTTCTCAAAACC
GCTGTTATCTCAAACCCAGGTTTCAGCGACAATTTCGTAGTCCACAAAAGTGATGAGGTTTGTGCCTGAGGACCCACAATTTCAGGATTT
AGACTGTGTGGCACCTCAGCTTTCCTCTGGATGTAACCACTCCTTGGTGAGAGAGGGAACTCCTCACCAATCCCATTTGACAAAGGCTAG
GCAATCTTCATTCTGCTTGGCTTTAGTCATTCTTGTCATTGGGCTGCAGAAGAAAAACAACTTTGCTGGGTGATCCCACTGCCTTGATTT
CACCTCGGAGCGAGGCTGGGCCATGTCCAAGTCTTATGAGGTCACCCTGACTAGAAAAAATTGAACTCACCTACAAATAGTCTGAAAGAG
TGGTGTATATCAAATACGTGGGTAGTGTTGCATTTCAAATGAGGCTCTTCTGGTTGAAATGATATATTTATAAAACCAGAATATCAAAAA
TGGGTGATGTATAATGTCTCTTTAGTTTTTTGGTATTTGGCCTCTTTTAAAGCCTGTCGGATGTATGGGAGAAAACAATGAACGTGCTTT
GATTTCCTATCAGTCACTCTTAAGAACATACATATTGTTTAAGTAACTCGGTCTTTTTTATCTGATTCTTGAGGCACTATGGGTAGCAAA
TAACCACTTACAAATTTAAATGTAATATACACTCCTTTTCTGTGTGTCAAGTCCTTATTTTTAGGTGCATATTGACATTTAAATGTTAAT
TATTGTTTGGCATATAATATCAAAAATCTATTATTTATTTTATGCTGTTACAGTTAAAAGATGTGATTTATGACATACTGAATCAACTTG
CCTTCCAATTTAGTGTGTAATATGGTAAGCATTTATACTTTTAGATATGTCTTATTTTTATTTGGATGCCTGTCTACCAAAAAATAAATG
TACTACCTATGATTAAAAATCCCAAGGCTATTGAGTGGCCAGACTTCCCCAACAAATGCCAAATTGGAGAAACTGGACTCTCAGCAGGTG
TTGCAGCTCTGCCTCCGATATCAAGATCACCTGCATCAGTGTGCAGAGGCCGTTGCTTTTGACCAGAATGCTTTGGTTAAACGAATCAAA
GAGATGGATCTGTCTGTAGAAACTCTGTTCAGCTTCATGCAGGAGCGCCAGAAAAGATACGCCAAGTATGCCGAGCAGATCCAGAAAGTG
AACGAGATGTCCGCCATCCTCCGCCGCATACAGATGGGCATCGACCAGACTGTGCCCCTGCTGGACAGGCTCAACAGCATGCTGCCCGAG

>In-frame_BICD1_ENST00000551848_chr12_32260478_+_LOH12CR1_ENST00000314565_chr12_12588562_+_1854nt
ATGGCCGCAGAAGAGGTATTGCAGACGGTGGACCATTATAAGACTGAGATAGAGAGGCTAACCAAGGAGCTCACGGAGACCACCCACGAG
AAGATCCAGGCTGCCGAGTACGGGCTGGTGGTGCTGGAGGAGAAGCTGACCCTCAAACAGCAGTATGATGAACTGGAGGCTGAGTACGAC
AGCCTCAAACAGGAGCTGGAGCAGCTCAAAGAGGTGAGTTGCCTGTCACCTCTCCCTTTCCTGGCCCTCACTCCCCCCACCCGCAAGGCC
CACTCATCATGATCAAGAAGTCATAAAGGAGGTGATTGAAAGGACTGTTTTTTCTTCTAGGGCCCTTTGTTGGTAAGAGAAGATTGAAAG
AGTCCATTGTTTCCTCCCCCAAGAGAAAAATTGCCTAAGAAATGAATATATAAGCTGGAATTTGGGAGGCAATGGCTGTTTGGCCTGCGG
GGGAGGGAGATTAGTAAGAGTCATCAAGTCTCAGCACTCTAAGACGACATTCAAGTGGGTTGGAATGTATAAATCAAACTTCTCAAAACC
GCTGTTATCTCAAACCCAGGTTTCAGCGACAATTTCGTAGTCCACAAAAGTGATGAGGTTTGTGCCTGAGGACCCACAATTTCAGGATTT
AGACTGTGTGGCACCTCAGCTTTCCTCTGGATGTAACCACTCCTTGGTGAGAGAGGGAACTCCTCACCAATCCCATTTGACAAAGGCTAG
GCAATCTTCATTCTGCTTGGCTTTAGTCATTCTTGTCATTGGGCTGCAGAAGAAAAACAACTTTGCTGGGTGATCCCACTGCCTTGATTT
CACCTCGGAGCGAGGCTGGGCCATGTCCAAGTCTTATGAGGTCACCCTGACTAGAAAAAATTGAACTCACCTACAAATAGTCTGAAAGAG
TGGTGTATATCAAATACGTGGGTAGTGTTGCATTTCAAATGAGGCTCTTCTGGTTGAAATGATATATTTATAAAACCAGAATATCAAAAA
TGGGTGATGTATAATGTCTCTTTAGTTTTTTGGTATTTGGCCTCTTTTAAAGCCTGTCGGATGTATGGGAGAAAACAATGAACGTGCTTT
GATTTCCTATCAGTCACTCTTAAGAACATACATATTGTTTAAGTAACTCGGTCTTTTTTATCTGATTCTTGAGGCACTATGGGTAGCAAA
TAACCACTTACAAATTTAAATGTAATATACACTCCTTTTCTGTGTGTCAAGTCCTTATTTTTAGGTGCATATTGACATTTAAATGTTAAT
TATTGTTTGGCATATAATATCAAAAATCTATTATTTATTTTATGCTGTTACAGTTAAAAGATGTGATTTATGACATACTGAATCAACTTG
CCTTCCAATTTAGTGTGTAATATGGTAAGCATTTATACTTTTAGATATGTCTTATTTTTATTTGGATGCCTGTCTACCAAAAAATAAATG
TACTACCTATGATTAAAAATCCCAAGGCTATTGAGTGGCCAGACTTCCCCAACAAATGCCAAATTGGAGAAACTGGACTCTCAGCAGGTG
TTGCAGCTCTGCCTCCGATATCAAGATCACCTGCATCAGTGTGCAGAGGCCGTTGCTTTTGACCAGAATGCTTTGGTTAAACGAATCAAA
GAGATGGATCTGTCTGTAGAAACTCTGTTCAGCTTCATGCAGGAGCGCCAGAAAAGATACGCCAAGTATGCCGAGCAGATCCAGAAAGTG
AACGAGATGTCCGCCATCCTCCGCCGCATACAGATGGGCATCGACCAGACTGTGCCCCTGCTGGACAGGCTCAACAGCATGCTGCCCGAG

>In-frame_BICD1_ENST00000551848_chr12_32260478_+_LOH12CR1_ENST00000298571_chr12_12588562_+_1854nt
ATGGCCGCAGAAGAGGTATTGCAGACGGTGGACCATTATAAGACTGAGATAGAGAGGCTAACCAAGGAGCTCACGGAGACCACCCACGAG
AAGATCCAGGCTGCCGAGTACGGGCTGGTGGTGCTGGAGGAGAAGCTGACCCTCAAACAGCAGTATGATGAACTGGAGGCTGAGTACGAC
AGCCTCAAACAGGAGCTGGAGCAGCTCAAAGAGGTGAGTTGCCTGTCACCTCTCCCTTTCCTGGCCCTCACTCCCCCCACCCGCAAGGCC
CACTCATCATGATCAAGAAGTCATAAAGGAGGTGATTGAAAGGACTGTTTTTTCTTCTAGGGCCCTTTGTTGGTAAGAGAAGATTGAAAG
AGTCCATTGTTTCCTCCCCCAAGAGAAAAATTGCCTAAGAAATGAATATATAAGCTGGAATTTGGGAGGCAATGGCTGTTTGGCCTGCGG
GGGAGGGAGATTAGTAAGAGTCATCAAGTCTCAGCACTCTAAGACGACATTCAAGTGGGTTGGAATGTATAAATCAAACTTCTCAAAACC
GCTGTTATCTCAAACCCAGGTTTCAGCGACAATTTCGTAGTCCACAAAAGTGATGAGGTTTGTGCCTGAGGACCCACAATTTCAGGATTT
AGACTGTGTGGCACCTCAGCTTTCCTCTGGATGTAACCACTCCTTGGTGAGAGAGGGAACTCCTCACCAATCCCATTTGACAAAGGCTAG
GCAATCTTCATTCTGCTTGGCTTTAGTCATTCTTGTCATTGGGCTGCAGAAGAAAAACAACTTTGCTGGGTGATCCCACTGCCTTGATTT
CACCTCGGAGCGAGGCTGGGCCATGTCCAAGTCTTATGAGGTCACCCTGACTAGAAAAAATTGAACTCACCTACAAATAGTCTGAAAGAG
TGGTGTATATCAAATACGTGGGTAGTGTTGCATTTCAAATGAGGCTCTTCTGGTTGAAATGATATATTTATAAAACCAGAATATCAAAAA
TGGGTGATGTATAATGTCTCTTTAGTTTTTTGGTATTTGGCCTCTTTTAAAGCCTGTCGGATGTATGGGAGAAAACAATGAACGTGCTTT
GATTTCCTATCAGTCACTCTTAAGAACATACATATTGTTTAAGTAACTCGGTCTTTTTTATCTGATTCTTGAGGCACTATGGGTAGCAAA
TAACCACTTACAAATTTAAATGTAATATACACTCCTTTTCTGTGTGTCAAGTCCTTATTTTTAGGTGCATATTGACATTTAAATGTTAAT
TATTGTTTGGCATATAATATCAAAAATCTATTATTTATTTTATGCTGTTACAGTTAAAAGATGTGATTTATGACATACTGAATCAACTTG
CCTTCCAATTTAGTGTGTAATATGGTAAGCATTTATACTTTTAGATATGTCTTATTTTTATTTGGATGCCTGTCTACCAAAAAATAAATG
TACTACCTATGATTAAAAATCCCAAGGCTATTGAGTGGCCAGACTTCCCCAACAAATGCCAAATTGGAGAAACTGGACTCTCAGCAGGTG
TTGCAGCTCTGCCTCCGATATCAAGATCACCTGCATCAGTGTGCAGAGGCCGTTGCTTTTGACCAGAATGCTTTGGTTAAACGAATCAAA
GAGATGGATCTGTCTGTAGAAACTCTGTTCAGCTTCATGCAGGAGCGCCAGAAAAGATACGCCAAGTATGCCGAGCAGATCCAGAAAGTG
AACGAGATGTCCGCCATCCTCCGCCGCATACAGATGGGCATCGACCAGACTGTGCCCCTGCTGGACAGGCTCAACAGCATGCTGCCCGAG


* Fusion transcript sequences (Full-length transcript).
>In-frame_BICD1_ENST00000551848_chr12_32260478_+_LOH12CR1_ENST00000542728_chr12_12588562_+_1648nt
GTGAGTTGCCTGTCACCTCTCCCTTTCCTGGCCCTCACTCCCCCCACCCGCAAGGCCCACTCATCATGATCAAGAAGTCATAAAGGAGGT
GATTGAAAGGACTGTTTTTTCTTCTAGGGCCCTTTGTTGGTAAGAGAAGATTGAAAGAGTCCATTGTTTCCTCCCCCAAGAGAAAAATTG
CCTAAGAAATGAATATATAAGCTGGAATTTGGGAGGCAATGGCTGTTTGGCCTGCGGGGGAGGGAGATTAGTAAGAGTCATCAAGTCTCA
GCACTCTAAGACGACATTCAAGTGGGTTGGAATGTATAAATCAAACTTCTCAAAACCGCTGTTATCTCAAACCCAGGTTTCAGCGACAAT
TTCGTAGTCCACAAAAGTGATGAGGTTTGTGCCTGAGGACCCACAATTTCAGGATTTAGACTGTGTGGCACCTCAGCTTTCCTCTGGATG
TAACCACTCCTTGGTGAGAGAGGGAACTCCTCACCAATCCCATTTGACAAAGGCTAGGCAATCTTCATTCTGCTTGGCTTTAGTCATTCT
TGTCATTGGGCTGCAGAAGAAAAACAACTTTGCTGGGTGATCCCACTGCCTTGATTTCACCTCGGAGCGAGGCTGGGCCATGTCCAAGTC
TTATGAGGTCACCCTGACTAGAAAAAATTGAACTCACCTACAAATAGTCTGAAAGAGTGGTGTATATCAAATACGTGGGTAGTGTTGCAT
TTCAAATGAGGCTCTTCTGGTTGAAATGATATATTTATAAAACCAGAATATCAAAAATGGGTGATGTATAATGTCTCTTTAGTTTTTTGG
TATTTGGCCTCTTTTAAAGCCTGTCGGATGTATGGGAGAAAACAATGAACGTGCTTTGATTTCCTATCAGTCACTCTTAAGAACATACAT
ATTGTTTAAGTAACTCGGTCTTTTTTATCTGATTCTTGAGGCACTATGGGTAGCAAATAACCACTTACAAATTTAAATGTAATATACACT
CCTTTTCTGTGTGTCAAGTCCTTATTTTTAGGTGCATATTGACATTTAAATGTTAATTATTGTTTGGCATATAATATCAAAAATCTATTA
TTTATTTTATGCTGTTACAGTTAAAAGATGTGATTTATGACATACTGAATCAACTTGCCTTCCAATTTAGTGTGTAATATGGTAAGCATT
TATACTTTTAGATATGTCTTATTTTTATTTGGATGCCTGTCTACCAAAAAATAAATGTACTACCTATGATTAAAAATCCCAAGGCTATTG
AGTGGCCAGACTTCCCCAACAAATGCCAAATTGGAGAAACTGGACTCTCAGCAGGTGTTGCAGCTCTGCCTCCGATATCAAGATCACCTG
CATCAGTGTGCAGAGGCCGTTGCTTTTGACCAGAATGCTTTGGTTAAACGAATCAAAGAGATGGATCTGTCTGTAGAAACTCTGTTCAGC
TTCATGCAGGAGCGCCAGAAAAGATACGCCAAGTATGCCGAGCAGATCCAGAAAGTGAACGAGATGTCCGCCATCCTCCGCCGCATACAG
ATGGGCATCGACCAGACTGTGCCCCTGCTGGACAGGCTCAACAGCATGCTGCCCGAGGGCGAGCGGCTGGAGCCCTTCAGCATGAAGCCC

>In-frame_BICD1_ENST00000551848_chr12_32260478_+_LOH12CR1_ENST00000314565_chr12_12588562_+_2771nt
GTGAGTTGCCTGTCACCTCTCCCTTTCCTGGCCCTCACTCCCCCCACCCGCAAGGCCCACTCATCATGATCAAGAAGTCATAAAGGAGGT
GATTGAAAGGACTGTTTTTTCTTCTAGGGCCCTTTGTTGGTAAGAGAAGATTGAAAGAGTCCATTGTTTCCTCCCCCAAGAGAAAAATTG
CCTAAGAAATGAATATATAAGCTGGAATTTGGGAGGCAATGGCTGTTTGGCCTGCGGGGGAGGGAGATTAGTAAGAGTCATCAAGTCTCA
GCACTCTAAGACGACATTCAAGTGGGTTGGAATGTATAAATCAAACTTCTCAAAACCGCTGTTATCTCAAACCCAGGTTTCAGCGACAAT
TTCGTAGTCCACAAAAGTGATGAGGTTTGTGCCTGAGGACCCACAATTTCAGGATTTAGACTGTGTGGCACCTCAGCTTTCCTCTGGATG
TAACCACTCCTTGGTGAGAGAGGGAACTCCTCACCAATCCCATTTGACAAAGGCTAGGCAATCTTCATTCTGCTTGGCTTTAGTCATTCT
TGTCATTGGGCTGCAGAAGAAAAACAACTTTGCTGGGTGATCCCACTGCCTTGATTTCACCTCGGAGCGAGGCTGGGCCATGTCCAAGTC
TTATGAGGTCACCCTGACTAGAAAAAATTGAACTCACCTACAAATAGTCTGAAAGAGTGGTGTATATCAAATACGTGGGTAGTGTTGCAT
TTCAAATGAGGCTCTTCTGGTTGAAATGATATATTTATAAAACCAGAATATCAAAAATGGGTGATGTATAATGTCTCTTTAGTTTTTTGG
TATTTGGCCTCTTTTAAAGCCTGTCGGATGTATGGGAGAAAACAATGAACGTGCTTTGATTTCCTATCAGTCACTCTTAAGAACATACAT
ATTGTTTAAGTAACTCGGTCTTTTTTATCTGATTCTTGAGGCACTATGGGTAGCAAATAACCACTTACAAATTTAAATGTAATATACACT
CCTTTTCTGTGTGTCAAGTCCTTATTTTTAGGTGCATATTGACATTTAAATGTTAATTATTGTTTGGCATATAATATCAAAAATCTATTA
TTTATTTTATGCTGTTACAGTTAAAAGATGTGATTTATGACATACTGAATCAACTTGCCTTCCAATTTAGTGTGTAATATGGTAAGCATT
TATACTTTTAGATATGTCTTATTTTTATTTGGATGCCTGTCTACCAAAAAATAAATGTACTACCTATGATTAAAAATCCCAAGGCTATTG
AGTGGCCAGACTTCCCCAACAAATGCCAAATTGGAGAAACTGGACTCTCAGCAGGTGTTGCAGCTCTGCCTCCGATATCAAGATCACCTG
CATCAGTGTGCAGAGGCCGTTGCTTTTGACCAGAATGCTTTGGTTAAACGAATCAAAGAGATGGATCTGTCTGTAGAAACTCTGTTCAGC
TTCATGCAGGAGCGCCAGAAAAGATACGCCAAGTATGCCGAGCAGATCCAGAAAGTGAACGAGATGTCCGCCATCCTCCGCCGCATACAG
ATGGGCATCGACCAGACTGTGCCCCTGCTGGACAGGCTCAACAGCATGCTGCCCGAGGGCGAGCGGCTGGAGCCCTTCAGCATGAAGCCC
GACCGCGAGCTCAGGCTGTAGCTGCTGCCCGGCCTGCCTGGGGCTGGGAGCCCCAGACACCGACACCCTGAGGACGTGTGGAGCTAAGGT
CATATCATCTGACCAGGTCTGGAGGCTGGCGGGAGGCTCCCTGAAAGTGGGTGCGAAGGAGTCCGGCTGGCATGAAAATCTGACTTTGCC
CAGCTCTTTTCCTTGATGCAGTTTCCCGGTGTGGAAGGAACCTAACCAGTTCTCGGTGATAACTGAAGCTGGAACGTGTGAATTATTAGG
AATTCTTTGAAGAACTCTGCATTGAGAATTATTTTTATTTAGTTTTTTTTTTTTTTTAATTGAGAGTATATAGTCCAGTCCAGGTACCGG
AATAAAAATATGGAGACAAGGGGAAAATATTTTACGAAGCTCTGTGTTCTCAACGCCCTCATGAACTTTTCAGTAGGCTGTCTGGTTTAT
GTGTGGTCAACTTGAAAAACTAATTGAATCTAGGTCTCTGTATTGTTCCTGTTTCTACCCTGACTGTTTCCGTCACACCAAGCCCTTATC
TGGGGCGCGTCTTCCTGCCCAGGTGGAACACTGGCATTTTGTTGACTGTCAGGTTAGGTGTCCCTTAGTCGTCATCAGAAGCTGAAGCCT
TCCTTTCCACACCCTCATCAGATTCATCTCCACTGATAACCGGTTTCCTTGATGCAGACATAGTTTAGCTTTCTTTGACTGCAGAGATGT
CTCATTCCACAGACATTTCTTGAACCCATTTGATGTGTCCAATATTGTGCCAGGGATACAAATATGGCCGTATAGCCTCAGGCCTTCATT
TCTGAAAAGAAAAAAGCTCAAAAAGCTGCTGAATTTCTCTGGGAGTTTAGGAAAGGAAGTTATTTGAGTAACAACAAAAGTGCTTAGTGT
CGTACTTTACACATCATAGGTGTTCTAATGGAAGCAAGGACTGGAGAAGCAAAGAGTGGAATGTGAGGAGCAGACCTAGGCAGACACCTT
GAGACTAAAAGTCAGAGCTGAAGGGAGTCGCTGGGGCCAGGACGGCATGCAGGCCTGTACCCTGTTCCCTAAGTTCCTGCAAGCGTCGGG

>In-frame_BICD1_ENST00000551848_chr12_32260478_+_LOH12CR1_ENST00000298571_chr12_12588562_+_1709nt
GTGAGTTGCCTGTCACCTCTCCCTTTCCTGGCCCTCACTCCCCCCACCCGCAAGGCCCACTCATCATGATCAAGAAGTCATAAAGGAGGT
GATTGAAAGGACTGTTTTTTCTTCTAGGGCCCTTTGTTGGTAAGAGAAGATTGAAAGAGTCCATTGTTTCCTCCCCCAAGAGAAAAATTG
CCTAAGAAATGAATATATAAGCTGGAATTTGGGAGGCAATGGCTGTTTGGCCTGCGGGGGAGGGAGATTAGTAAGAGTCATCAAGTCTCA
GCACTCTAAGACGACATTCAAGTGGGTTGGAATGTATAAATCAAACTTCTCAAAACCGCTGTTATCTCAAACCCAGGTTTCAGCGACAAT
TTCGTAGTCCACAAAAGTGATGAGGTTTGTGCCTGAGGACCCACAATTTCAGGATTTAGACTGTGTGGCACCTCAGCTTTCCTCTGGATG
TAACCACTCCTTGGTGAGAGAGGGAACTCCTCACCAATCCCATTTGACAAAGGCTAGGCAATCTTCATTCTGCTTGGCTTTAGTCATTCT
TGTCATTGGGCTGCAGAAGAAAAACAACTTTGCTGGGTGATCCCACTGCCTTGATTTCACCTCGGAGCGAGGCTGGGCCATGTCCAAGTC
TTATGAGGTCACCCTGACTAGAAAAAATTGAACTCACCTACAAATAGTCTGAAAGAGTGGTGTATATCAAATACGTGGGTAGTGTTGCAT
TTCAAATGAGGCTCTTCTGGTTGAAATGATATATTTATAAAACCAGAATATCAAAAATGGGTGATGTATAATGTCTCTTTAGTTTTTTGG
TATTTGGCCTCTTTTAAAGCCTGTCGGATGTATGGGAGAAAACAATGAACGTGCTTTGATTTCCTATCAGTCACTCTTAAGAACATACAT
ATTGTTTAAGTAACTCGGTCTTTTTTATCTGATTCTTGAGGCACTATGGGTAGCAAATAACCACTTACAAATTTAAATGTAATATACACT
CCTTTTCTGTGTGTCAAGTCCTTATTTTTAGGTGCATATTGACATTTAAATGTTAATTATTGTTTGGCATATAATATCAAAAATCTATTA
TTTATTTTATGCTGTTACAGTTAAAAGATGTGATTTATGACATACTGAATCAACTTGCCTTCCAATTTAGTGTGTAATATGGTAAGCATT
TATACTTTTAGATATGTCTTATTTTTATTTGGATGCCTGTCTACCAAAAAATAAATGTACTACCTATGATTAAAAATCCCAAGGCTATTG
AGTGGCCAGACTTCCCCAACAAATGCCAAATTGGAGAAACTGGACTCTCAGCAGGTGTTGCAGCTCTGCCTCCGATATCAAGATCACCTG
CATCAGTGTGCAGAGGCCGTTGCTTTTGACCAGAATGCTTTGGTTAAACGAATCAAAGAGATGGATCTGTCTGTAGAAACTCTGTTCAGC
TTCATGCAGGAGCGCCAGAAAAGATACGCCAAGTATGCCGAGCAGATCCAGAAAGTGAACGAGATGTCCGCCATCCTCCGCCGCATACAG
ATGGGCATCGACCAGACTGTGCCCCTGCTGGACAGGCTCAACAGCATGCTGCCCGAGGGCGAGCGGCTGGAGCCCTTCAGCATGAAGCCC


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FusionGenePPI for BICD1_LOH12CR1


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
BICD1RAB6A, PLK1, DISC1, STAT3, MAPK14, NTRK1, HERC2, PCM1, CEP128, SH3BP5L, SYBU, NEFLLOH12CR1PUF60, FBXO25, TEX35, FGL1, C17orf59, BCAS4, TRIML2, IKBIP, STX11


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for BICD1_LOH12CR1


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for BICD1_LOH12CR1


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource