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Fusion gene ID: 41570 |
FusionGeneSummary for VPS28_SF3A1 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: VPS28_SF3A1 | Fusion gene ID: 41570 | Hgene | Tgene | Gene symbol | VPS28 | SF3A1 | Gene ID | 51160 | 10291 |
| Gene name | VPS28, ESCRT-I subunit | splicing factor 3a subunit 1 | |
| Synonyms | - | PRP21|PRPF21|SAP114|SF3A120 | |
| Cytomap | 8q24.3 | 22q12.2 | |
| Type of gene | protein-coding | protein-coding | |
| Description | vacuolar protein sorting-associated protein 28 homologESCRT-I complex subunit VPS28vacuolar protein sorting 28 homologvacuolar protein sorting 28-like proteinyeast class E protein Vps28p homolog | splicing factor 3A subunit 1SAP 114pre-mRNA processing 21pre-mRNA splicing factor SF3a (120 kDa subunit)spliceosome-associated protein 114splicing factor 3 subunit 1splicing factor 3a, subunit 1, 120kDsplicing factor 3a, subunit 1, 120kDa | |
| Modification date | 20180523 | 20180523 | |
| UniProtAcc | Q9UK41 | Q15459 | |
| Ensembl transtripts involved in fusion gene | ENST00000526054, ENST00000529182, ENST00000377348, ENST00000292510, ENST00000526734, | ENST00000215793, ENST00000439242, | |
| Fusion gene scores | * DoF score | 1 X 1 X 1=1 | 6 X 5 X 4=120 |
| # samples | 1 | 10 | |
| ** MAII score | log2(1/1*10)=3.32192809488736 | log2(10/120*10)=-0.263034405833794 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: VPS28 [Title/Abstract] AND SF3A1 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | VPS28 | GO:0031397 | negative regulation of protein ubiquitination | 18077552 |
| Tgene | SF3A1 | GO:0000398 | mRNA splicing, via spliceosome | 10882114 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | RV | PRAD | TCGA-EJ-7783-01A | VPS28 | chr8 | 145649000 | - | SF3A1 | chr22 | 30742508 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| In-frame | ENST00000526054 | ENST00000215793 | VPS28 | chr8 | 145649000 | - | SF3A1 | chr22 | 30742508 | - |
| In-frame | ENST00000526054 | ENST00000439242 | VPS28 | chr8 | 145649000 | - | SF3A1 | chr22 | 30742508 | - |
| Frame-shift | ENST00000529182 | ENST00000215793 | VPS28 | chr8 | 145649000 | - | SF3A1 | chr22 | 30742508 | - |
| Frame-shift | ENST00000529182 | ENST00000439242 | VPS28 | chr8 | 145649000 | - | SF3A1 | chr22 | 30742508 | - |
| Frame-shift | ENST00000377348 | ENST00000215793 | VPS28 | chr8 | 145649000 | - | SF3A1 | chr22 | 30742508 | - |
| Frame-shift | ENST00000377348 | ENST00000439242 | VPS28 | chr8 | 145649000 | - | SF3A1 | chr22 | 30742508 | - |
| In-frame | ENST00000292510 | ENST00000215793 | VPS28 | chr8 | 145649000 | - | SF3A1 | chr22 | 30742508 | - |
| In-frame | ENST00000292510 | ENST00000439242 | VPS28 | chr8 | 145649000 | - | SF3A1 | chr22 | 30742508 | - |
| intron-3CDS | ENST00000526734 | ENST00000215793 | VPS28 | chr8 | 145649000 | - | SF3A1 | chr22 | 30742508 | - |
| intron-3CDS | ENST00000526734 | ENST00000439242 | VPS28 | chr8 | 145649000 | - | SF3A1 | chr22 | 30742508 | - |
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FusionProtFeatures for VPS28_SF3A1 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| VPS28 | SF3A1 |
| Component of the ESCRT-I complex, a regulator ofvesicular trafficking process. {ECO:0000269|PubMed:11916981}. | Subunit of the splicing factor SF3A required for 'A'complex assembly formed by the stable binding of U2 snRNP to thebranchpoint sequence (BPS) in pre-mRNA. Sequence independentbinding of SF3A/SF3B complex upstream of the branch site isessential, it may anchor U2 snRNP to the pre-mRNA. May also beinvolved in the assembly of the 'E' complex. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | VPS28 | chr8:145649000 | chr22:30742508 | ENST00000292510 | - | 10 | 10 | 124_220 | 284 | 222 | Domain | VPS28 C-terminal |
| Hgene | VPS28 | chr8:145649000 | chr22:30742508 | ENST00000292510 | - | 10 | 10 | 13_120 | 284 | 222 | Domain | VPS28 N-terminal |
| Hgene | VPS28 | chr8:145649000 | chr22:30742508 | ENST00000377348 | - | 9 | 9 | 124_220 | 324 | 234 | Domain | VPS28 C-terminal |
| Hgene | VPS28 | chr8:145649000 | chr22:30742508 | ENST00000377348 | - | 9 | 9 | 13_120 | 324 | 234 | Domain | VPS28 N-terminal |
| Hgene | VPS28 | chr8:145649000 | chr22:30742508 | ENST00000526054 | - | 9 | 9 | 124_220 | 284 | 222 | Domain | VPS28 C-terminal |
| Hgene | VPS28 | chr8:145649000 | chr22:30742508 | ENST00000526054 | - | 9 | 9 | 13_120 | 284 | 222 | Domain | VPS28 N-terminal |
| Hgene | VPS28 | chr8:145649000 | chr22:30742508 | ENST00000529182 | - | 8 | 8 | 124_220 | 324 | 234 | Domain | VPS28 C-terminal |
| Hgene | VPS28 | chr8:145649000 | chr22:30742508 | ENST00000529182 | - | 8 | 8 | 13_120 | 324 | 234 | Domain | VPS28 N-terminal |
| Tgene | >SF3A1 | chr8:145649000 | chr22:30742508 | ENST00000215793 | - | 1 | 16 | 118_122 | 61 | 794 | Compositional bias | Note=Poly-Gln |
| Tgene | >SF3A1 | chr8:145649000 | chr22:30742508 | ENST00000215793 | - | 1 | 16 | 260_267 | 61 | 794 | Compositional bias | Note=Poly-Glu |
| Tgene | >SF3A1 | chr8:145649000 | chr22:30742508 | ENST00000215793 | - | 1 | 16 | 369_372 | 61 | 794 | Compositional bias | Note=Poly-Pro |
| Tgene | >SF3A1 | chr8:145649000 | chr22:30742508 | ENST00000215793 | - | 1 | 16 | 557_560 | 61 | 794 | Compositional bias | Note=Poly-Pro |
| Tgene | >SF3A1 | chr8:145649000 | chr22:30742508 | ENST00000215793 | - | 1 | 16 | 672_675 | 61 | 794 | Compositional bias | Note=Poly-Pro |
| Tgene | >SF3A1 | chr8:145649000 | chr22:30742508 | ENST00000215793 | - | 1 | 16 | 707_793 | 61 | 794 | Domain | Ubiquitin-like |
| Tgene | >SF3A1 | chr8:145649000 | chr22:30742508 | ENST00000215793 | - | 1 | 16 | 166_208 | 61 | 794 | Repeat | Note=SURP motif 2 |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Tgene | SF3A1 | chr8:145649000 | chr22:30742508 | ENST00000215793 | - | 1 | 16 | 10_16 | 61 | 794 | Compositional bias | Note=Poly-Pro |
| Tgene | SF3A1 | chr8:145649000 | chr22:30742508 | ENST00000215793 | - | 1 | 16 | 52_94 | 61 | 794 | Repeat | Note=SURP motif 1 |
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FusionGeneSequence for VPS28_SF3A1 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| >In-frame_VPS28_ENST00000526054_chr8_145649000_-_SF3A1_ENST00000215793_chr22_30742508_-_732aa KRAXIXSXDPTERDQQPQVQLSEPQXPLPCLLPPQGQRVQGREGSGAVRRHPQGHAAAAADHPAAAAPEGPSPSNPRDHRAQRASSXVXV HCXSSLYLSLRLGCGEADGSVCGQEWAPVSDPADAERAAQLPVXLSPPTAQPLQLLHEASGTVHQDLDSTQRFIFKAQERGXKPPRSFGS GVLPSGMGQIPGTXEEEGRRGEGEGAGGLCSDRLAXFCGGGNSGLPTQXARELPSPHHARGAGGPNPHSGALXKVWGEXGSXDGGRVXXG GXQTGEGGGASFPAGPGHPSTRYGXGFRXXRRRAESAPTPRDTHASTSAPNSRPSHCPQGLXSQSLQALASSPCSRXVSCVPHYWGEDPR QQNAGTHAHWTSXPSLAGAAGSLHPXEAERXXGVRTRSGYXEQLEAVGXAAYXHLRCRGNSHWXEDRXGGDPEARGKGDLGWPLRQHGPD PAGCPGQHHPPGADXGHSQGQRPGARGXHXREDWPQQAQXNPSTATATIFSHQHPQLGSTHHFSAPTTHNATSSSYYSCLRSTRHAPAPN GICGPAAPRLSDRPHAAHHPRAQNQRGAHASLGPSYYGPPPTPHDCANSLCACSTCGTCPSSSPNAPCASPTSHGRXAHLQKTEDRGQPH ARGGVPAQKQGSSVHQSPGAQHAGXDGMETEWAGAGLHPPTHGPGLCHXGEDSXSHRHACRETEATVXGYLHQRFQLTGLLQHGQWRSHP >In-frame_VPS28_ENST00000526054_chr8_145649000_-_SF3A1_ENST00000439242_chr22_30742508_-_667aa KRAXIXSXDPTERDQQPQVQLSEPQXPLPCLLPPQGQRVQGREGSVCGQEWAPVSDPADAERAAQLPVXLSPPTAQPLQLLHEASGTVHQ DLDSTQRFIFKAQERGXKPPRSFGSGVLPSGMGQIPGTXEEEGRRGEGEGAGGLCSDRLAXFCGGGNSGLPTQXARELPSPHHARGAGGP NPHSGALXKVWGEXGSXDGGRVXXGGXQTGEGGGASFPAGPGHPSTRYGXGFRXXRRRAESAPTPRDTHASTSAPNSRPSHCPQGLXSQS LQALASSPCSRXVSCVPHYWGEDPRQQNAGTHAHWTSXPSLAGAAGSLHPXEAERXXGVRTRSGYXEQLEAVGXAAYXHLRCRGNSHWXE DRXGGDPEARGKGDLGWPLRQHGPDPAGCPGQHHPPGADXGHSQGQRPGARGXHXREDWPQQAQXNPSTATATIFSHQHPQLGSTHHFSA PTTHNATSSSYYSCLRSTRHAPAPNGICGPAAPRLSDRPHAAHHPRAQNQRGAHASLGPSYYGPPPTPHDCANSLCACSTCGTCPSSSPN APCASPTSHGRXAHLQKTEDRGQPHARGGVPAQKQGSSVHQSPGAQHAGXDGMETEWAGAGLHPPTHGPGLCHXGEDSXSHRHACRETEA >In-frame_VPS28_ENST00000292510_chr8_145649000_-_SF3A1_ENST00000215793_chr22_30742508_-_732aa KRAXIXSXDPTERDQQPQVQLSEPQXPLPCLLPPQGQRVQGREGSGAVRRHPQGHAAAAADHPAAAAPEGPSPSNPRDHRAQRASSXVXV HCXSSLYLSLRLGCGEADGSVCGQEWAPVSDPADAERAAQLPVXLSPPTAQPLQLLHEASGTVHQDLDSTQRFIFKAQERGXKPPRSFGS GVLPSGMGQIPGTXEEEGRRGEGEGAGGLCSDRLAXFCGGGNSGLPTQXARELPSPHHARGAGGPNPHSGALXKVWGEXGSXDGGRVXXG GXQTGEGGGASFPAGPGHPSTRYGXGFRXXRRRAESAPTPRDTHASTSAPNSRPSHCPQGLXSQSLQALASSPCSRXVSCVPHYWGEDPR QQNAGTHAHWTSXPSLAGAAGSLHPXEAERXXGVRTRSGYXEQLEAVGXAAYXHLRCRGNSHWXEDRXGGDPEARGKGDLGWPLRQHGPD PAGCPGQHHPPGADXGHSQGQRPGARGXHXREDWPQQAQXNPSTATATIFSHQHPQLGSTHHFSAPTTHNATSSSYYSCLRSTRHAPAPN GICGPAAPRLSDRPHAAHHPRAQNQRGAHASLGPSYYGPPPTPHDCANSLCACSTCGTCPSSSPNAPCASPTSHGRXAHLQKTEDRGQPH ARGGVPAQKQGSSVHQSPGAQHAGXDGMETEWAGAGLHPPTHGPGLCHXGEDSXSHRHACRETEATVXGYLHQRFQLTGLLQHGQWRSHP >In-frame_VPS28_ENST00000292510_chr8_145649000_-_SF3A1_ENST00000439242_chr22_30742508_-_667aa KRAXIXSXDPTERDQQPQVQLSEPQXPLPCLLPPQGQRVQGREGSVCGQEWAPVSDPADAERAAQLPVXLSPPTAQPLQLLHEASGTVHQ DLDSTQRFIFKAQERGXKPPRSFGSGVLPSGMGQIPGTXEEEGRRGEGEGAGGLCSDRLAXFCGGGNSGLPTQXARELPSPHHARGAGGP NPHSGALXKVWGEXGSXDGGRVXXGGXQTGEGGGASFPAGPGHPSTRYGXGFRXXRRRAESAPTPRDTHASTSAPNSRPSHCPQGLXSQS LQALASSPCSRXVSCVPHYWGEDPRQQNAGTHAHWTSXPSLAGAAGSLHPXEAERXXGVRTRSGYXEQLEAVGXAAYXHLRCRGNSHWXE DRXGGDPEARGKGDLGWPLRQHGPDPAGCPGQHHPPGADXGHSQGQRPGARGXHXREDWPQQAQXNPSTATATIFSHQHPQLGSTHHFSA PTTHNATSSSYYSCLRSTRHAPAPNGICGPAAPRLSDRPHAAHHPRAQNQRGAHASLGPSYYGPPPTPHDCANSLCACSTCGTCPSSSPN APCASPTSHGRXAHLQKTEDRGQPHARGGVPAQKQGSSVHQSPGAQHAGXDGMETEWAGAGLHPPTHGPGLCHXGEDSXSHRHACRETEA |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| >In-frame_VPS28_ENST00000526054_chr8_145649000_-_SF3A1_ENST00000215793_chr22_30742508_-_2197nt AAACGGGCCTGAATTTGAAGCTAGGATCCGACAGAACGAGATCAACAACCCCAAGTTCAACTTTCTGAACCCCAATGACCCTTACCATGC CTACTACCGCCACAAGGTCAGCGAGTTCAAGGAAGGGAAGGCTCAGGAGCCGTCCGCCGCCATCCCCAAGGTCATGCAGCAGCAGCAGCA GACCACCCAGCAGCAGCTGCCCCAGAAGGTCCAAGCCCAAGTAATCCAAGAGACCATCGTGCCCAAAGAGCCTCCTCCTGAGTTTGAGTT CATTGCTGATCCTCCCTCTATCTCAGCCTTCGACTTGGATGTGGTGAAGCTGACGGCTCAGTTTGTGGCCAGGAATGGGCGCCAGTTTCT GACCCAGCTGATGCAGAAAGAGCAGCGCAACTACCAGTTTGACTTTCTCCGCCCACAGCACAGCCTCTTCAACTACTTCACGAAGCTAGT GGAACAGTACACCAAGATCTTGATTCCACCCAAAGGTTTATTTTCAAAGCTCAAGAAAGAGGCTGAAAACCCCCGAGAAGTTTTGGATCA GGTGTGTTACCGAGTGGAATGGGCCAAATTCCAGGAACGTGAGAGGAAGAAGGAAGAAGAGGAGAAGGAGAAGGAGCGGGTGGCCTATGC TCAGATCGACTGGCATGATTTTGTGGTGGTGGAAACAGTGGACTTCCAACCCAATGAGCAAGGGAACTTCCCTCCCCCCACCACGCCAGA GGAGCTGGGGGCCCGAATCCTCATTCAGGAGCGCTATGAAAAGTTTGGGGAGAGTGAGGAAGTTGAGATGGAGGTCGAGTCTGATGAGGA GGATGACAAACAGGAGAAGGCGGAGGAGCCTCCTTCCCAGCTGGACCAGGACACCCAAGTACAAGATATGGATGAGGGTTCAGATGATGA AGAAGAAGGGCAGAAAGTGCCCCCACCCCCAGAGACACCCATGCCTCCACCTCTGCCCCCAACTCCAGACCAAGTCATTGTCCGCAAGGA TTATGATCCCAAAGCCTCCAAGCCCTTGCCTCCAGCCCCTGCTCCAGATGAGTATCTTGTGTCCCCCATTACTGGGGAGAAGATCCCCGC CAGCAAAATGCAGGAACACATGCGCATTGGACTTCTTGACCCTCGCTGGCTGGAGCAGCGGGATCGCTCCATCCGTGAGAAGCAGAGCGA TGATGAGGTGTACGCACCAGGTCTGGATATTGAGAGCAGCTTGAAGCAGTTGGCTGAGCGGCGTACTGACATCTTCGGTGTAGAGGAAAC AGCCATTGGTAAGAAGATCGGTGAGGAGGAGATCCAGAAGCCAGAGGAAAAGGTGACCTGGGATGGCCACTCAGGCAGCATGGCCCGGAC CCAGCAGGCTGCCCAGGCCAACATCACCCTCCAGGAGCAGATTGAGGCCATTCACAAGGCCAAAGGCCTGGTGCCAGAGGATGACACTAA AGAGAAGATTGGCCCCAGCAAGCCCAATGAAATCCCTCAACAGCCACCGCCACCATCTTCAGCCACCAACATCCCCAGCTCGGCTCCACC CATCACTTCAGTGCCCCGACCACCCACAATGCCACCTCCAGTTCGTACTACAGTTGTCTCCGCAGTACCCGTCATGCCCCGGCCCCCAAT GGCATCTGTGGTCCGGCTGCCCCCAGGCTCAGTGATCGCCCCCATGCCGCCCATCATCCACGCGCCCAGAATCAACGTGGTGCCCATGCC TCCCTCGGCCCCTCCTATTATGGCCCCCCGCCCACCCCCCATGATTGTGCCAACAGCCTTTGTGCCTGCTCCACCTGTGGCACCTGTCCC AGCTCCAGCCCCAATGCCCCCTGTGCATCCCCCACCTCCCATGGAAGATGAGCCCACCTCCAAAAAACTGAAGACAGAGGACAGCCTCAT GCCAGAGGAGGAGTTCCTGCGCAGAAACAAGGGTCCAGTGTCCATCAAAGTCCAGGTGCCCAACATGCAGGATAAGACGGAATGGAAACT GAATGGGCAGGTGCTGGTCTTCACCCTCCCACTCACGGACCAGGTCTCTGTCATTAAGGTGAAGATTCATGAAGCCACAGGCATGCCTGC AGGGAAACAGAAGCTACAGTATGAGGGTATCTTCATCAAAGATTCCAACTCACTGGCTTACTACAACATGGCCAATGGCGCAGTCATCCA >In-frame_VPS28_ENST00000526054_chr8_145649000_-_SF3A1_ENST00000439242_chr22_30742508_-_2002nt AAACGGGCCTGAATTTGAAGCTAGGATCCGACAGAACGAGATCAACAACCCCAAGTTCAACTTTCTGAACCCCAATGACCCTTACCATGC CTACTACCGCCACAAGGTCAGCGAGTTCAAGGAAGGGAAGGCTCAGTTTGTGGCCAGGAATGGGCGCCAGTTTCTGACCCAGCTGATGCA GAAAGAGCAGCGCAACTACCAGTTTGACTTTCTCCGCCCACAGCACAGCCTCTTCAACTACTTCACGAAGCTAGTGGAACAGTACACCAA GATCTTGATTCCACCCAAAGGTTTATTTTCAAAGCTCAAGAAAGAGGCTGAAAACCCCCGAGAAGTTTTGGATCAGGTGTGTTACCGAGT GGAATGGGCCAAATTCCAGGAACGTGAGAGGAAGAAGGAAGAAGAGGAGAAGGAGAAGGAGCGGGTGGCCTATGCTCAGATCGACTGGCA TGATTTTGTGGTGGTGGAAACAGTGGACTTCCAACCCAATGAGCAAGGGAACTTCCCTCCCCCCACCACGCCAGAGGAGCTGGGGGCCCG AATCCTCATTCAGGAGCGCTATGAAAAGTTTGGGGAGAGTGAGGAAGTTGAGATGGAGGTCGAGTCTGATGAGGAGGATGACAAACAGGA GAAGGCGGAGGAGCCTCCTTCCCAGCTGGACCAGGACACCCAAGTACAAGATATGGATGAGGGTTCAGATGATGAAGAAGAAGGGCAGAA AGTGCCCCCACCCCCAGAGACACCCATGCCTCCACCTCTGCCCCCAACTCCAGACCAAGTCATTGTCCGCAAGGATTATGATCCCAAAGC CTCCAAGCCCTTGCCTCCAGCCCCTGCTCCAGATGAGTATCTTGTGTCCCCCATTACTGGGGAGAAGATCCCCGCCAGCAAAATGCAGGA ACACATGCGCATTGGACTTCTTGACCCTCGCTGGCTGGAGCAGCGGGATCGCTCCATCCGTGAGAAGCAGAGCGATGATGAGGTGTACGC ACCAGGTCTGGATATTGAGAGCAGCTTGAAGCAGTTGGCTGAGCGGCGTACTGACATCTTCGGTGTAGAGGAAACAGCCATTGGTAAGAA GATCGGTGAGGAGGAGATCCAGAAGCCAGAGGAAAAGGTGACCTGGGATGGCCACTCAGGCAGCATGGCCCGGACCCAGCAGGCTGCCCA GGCCAACATCACCCTCCAGGAGCAGATTGAGGCCATTCACAAGGCCAAAGGCCTGGTGCCAGAGGATGACACTAAAGAGAAGATTGGCCC CAGCAAGCCCAATGAAATCCCTCAACAGCCACCGCCACCATCTTCAGCCACCAACATCCCCAGCTCGGCTCCACCCATCACTTCAGTGCC CCGACCACCCACAATGCCACCTCCAGTTCGTACTACAGTTGTCTCCGCAGTACCCGTCATGCCCCGGCCCCCAATGGCATCTGTGGTCCG GCTGCCCCCAGGCTCAGTGATCGCCCCCATGCCGCCCATCATCCACGCGCCCAGAATCAACGTGGTGCCCATGCCTCCCTCGGCCCCTCC TATTATGGCCCCCCGCCCACCCCCCATGATTGTGCCAACAGCCTTTGTGCCTGCTCCACCTGTGGCACCTGTCCCAGCTCCAGCCCCAAT GCCCCCTGTGCATCCCCCACCTCCCATGGAAGATGAGCCCACCTCCAAAAAACTGAAGACAGAGGACAGCCTCATGCCAGAGGAGGAGTT CCTGCGCAGAAACAAGGGTCCAGTGTCCATCAAAGTCCAGGTGCCCAACATGCAGGATAAGACGGAATGGAAACTGAATGGGCAGGTGCT GGTCTTCACCCTCCCACTCACGGACCAGGTCTCTGTCATTAAGGTGAAGATTCATGAAGCCACAGGCATGCCTGCAGGGAAACAGAAGCT ACAGTATGAGGGTATCTTCATCAAAGATTCCAACTCACTGGCTTACTACAACATGGCCAATGGCGCAGTCATCCACCTGGCCCTCAAGGA >In-frame_VPS28_ENST00000292510_chr8_145649000_-_SF3A1_ENST00000215793_chr22_30742508_-_2197nt AAACGGGCCTGAATTTGAAGCTAGGATCCGACAGAACGAGATCAACAACCCCAAGTTCAACTTTCTGAACCCCAATGACCCTTACCATGC CTACTACCGCCACAAGGTCAGCGAGTTCAAGGAAGGGAAGGCTCAGGAGCCGTCCGCCGCCATCCCCAAGGTCATGCAGCAGCAGCAGCA GACCACCCAGCAGCAGCTGCCCCAGAAGGTCCAAGCCCAAGTAATCCAAGAGACCATCGTGCCCAAAGAGCCTCCTCCTGAGTTTGAGTT CATTGCTGATCCTCCCTCTATCTCAGCCTTCGACTTGGATGTGGTGAAGCTGACGGCTCAGTTTGTGGCCAGGAATGGGCGCCAGTTTCT GACCCAGCTGATGCAGAAAGAGCAGCGCAACTACCAGTTTGACTTTCTCCGCCCACAGCACAGCCTCTTCAACTACTTCACGAAGCTAGT GGAACAGTACACCAAGATCTTGATTCCACCCAAAGGTTTATTTTCAAAGCTCAAGAAAGAGGCTGAAAACCCCCGAGAAGTTTTGGATCA GGTGTGTTACCGAGTGGAATGGGCCAAATTCCAGGAACGTGAGAGGAAGAAGGAAGAAGAGGAGAAGGAGAAGGAGCGGGTGGCCTATGC TCAGATCGACTGGCATGATTTTGTGGTGGTGGAAACAGTGGACTTCCAACCCAATGAGCAAGGGAACTTCCCTCCCCCCACCACGCCAGA GGAGCTGGGGGCCCGAATCCTCATTCAGGAGCGCTATGAAAAGTTTGGGGAGAGTGAGGAAGTTGAGATGGAGGTCGAGTCTGATGAGGA GGATGACAAACAGGAGAAGGCGGAGGAGCCTCCTTCCCAGCTGGACCAGGACACCCAAGTACAAGATATGGATGAGGGTTCAGATGATGA AGAAGAAGGGCAGAAAGTGCCCCCACCCCCAGAGACACCCATGCCTCCACCTCTGCCCCCAACTCCAGACCAAGTCATTGTCCGCAAGGA TTATGATCCCAAAGCCTCCAAGCCCTTGCCTCCAGCCCCTGCTCCAGATGAGTATCTTGTGTCCCCCATTACTGGGGAGAAGATCCCCGC CAGCAAAATGCAGGAACACATGCGCATTGGACTTCTTGACCCTCGCTGGCTGGAGCAGCGGGATCGCTCCATCCGTGAGAAGCAGAGCGA TGATGAGGTGTACGCACCAGGTCTGGATATTGAGAGCAGCTTGAAGCAGTTGGCTGAGCGGCGTACTGACATCTTCGGTGTAGAGGAAAC AGCCATTGGTAAGAAGATCGGTGAGGAGGAGATCCAGAAGCCAGAGGAAAAGGTGACCTGGGATGGCCACTCAGGCAGCATGGCCCGGAC CCAGCAGGCTGCCCAGGCCAACATCACCCTCCAGGAGCAGATTGAGGCCATTCACAAGGCCAAAGGCCTGGTGCCAGAGGATGACACTAA AGAGAAGATTGGCCCCAGCAAGCCCAATGAAATCCCTCAACAGCCACCGCCACCATCTTCAGCCACCAACATCCCCAGCTCGGCTCCACC CATCACTTCAGTGCCCCGACCACCCACAATGCCACCTCCAGTTCGTACTACAGTTGTCTCCGCAGTACCCGTCATGCCCCGGCCCCCAAT GGCATCTGTGGTCCGGCTGCCCCCAGGCTCAGTGATCGCCCCCATGCCGCCCATCATCCACGCGCCCAGAATCAACGTGGTGCCCATGCC TCCCTCGGCCCCTCCTATTATGGCCCCCCGCCCACCCCCCATGATTGTGCCAACAGCCTTTGTGCCTGCTCCACCTGTGGCACCTGTCCC AGCTCCAGCCCCAATGCCCCCTGTGCATCCCCCACCTCCCATGGAAGATGAGCCCACCTCCAAAAAACTGAAGACAGAGGACAGCCTCAT GCCAGAGGAGGAGTTCCTGCGCAGAAACAAGGGTCCAGTGTCCATCAAAGTCCAGGTGCCCAACATGCAGGATAAGACGGAATGGAAACT GAATGGGCAGGTGCTGGTCTTCACCCTCCCACTCACGGACCAGGTCTCTGTCATTAAGGTGAAGATTCATGAAGCCACAGGCATGCCTGC AGGGAAACAGAAGCTACAGTATGAGGGTATCTTCATCAAAGATTCCAACTCACTGGCTTACTACAACATGGCCAATGGCGCAGTCATCCA >In-frame_VPS28_ENST00000292510_chr8_145649000_-_SF3A1_ENST00000439242_chr22_30742508_-_2002nt AAACGGGCCTGAATTTGAAGCTAGGATCCGACAGAACGAGATCAACAACCCCAAGTTCAACTTTCTGAACCCCAATGACCCTTACCATGC CTACTACCGCCACAAGGTCAGCGAGTTCAAGGAAGGGAAGGCTCAGTTTGTGGCCAGGAATGGGCGCCAGTTTCTGACCCAGCTGATGCA GAAAGAGCAGCGCAACTACCAGTTTGACTTTCTCCGCCCACAGCACAGCCTCTTCAACTACTTCACGAAGCTAGTGGAACAGTACACCAA GATCTTGATTCCACCCAAAGGTTTATTTTCAAAGCTCAAGAAAGAGGCTGAAAACCCCCGAGAAGTTTTGGATCAGGTGTGTTACCGAGT GGAATGGGCCAAATTCCAGGAACGTGAGAGGAAGAAGGAAGAAGAGGAGAAGGAGAAGGAGCGGGTGGCCTATGCTCAGATCGACTGGCA TGATTTTGTGGTGGTGGAAACAGTGGACTTCCAACCCAATGAGCAAGGGAACTTCCCTCCCCCCACCACGCCAGAGGAGCTGGGGGCCCG AATCCTCATTCAGGAGCGCTATGAAAAGTTTGGGGAGAGTGAGGAAGTTGAGATGGAGGTCGAGTCTGATGAGGAGGATGACAAACAGGA GAAGGCGGAGGAGCCTCCTTCCCAGCTGGACCAGGACACCCAAGTACAAGATATGGATGAGGGTTCAGATGATGAAGAAGAAGGGCAGAA AGTGCCCCCACCCCCAGAGACACCCATGCCTCCACCTCTGCCCCCAACTCCAGACCAAGTCATTGTCCGCAAGGATTATGATCCCAAAGC CTCCAAGCCCTTGCCTCCAGCCCCTGCTCCAGATGAGTATCTTGTGTCCCCCATTACTGGGGAGAAGATCCCCGCCAGCAAAATGCAGGA ACACATGCGCATTGGACTTCTTGACCCTCGCTGGCTGGAGCAGCGGGATCGCTCCATCCGTGAGAAGCAGAGCGATGATGAGGTGTACGC ACCAGGTCTGGATATTGAGAGCAGCTTGAAGCAGTTGGCTGAGCGGCGTACTGACATCTTCGGTGTAGAGGAAACAGCCATTGGTAAGAA GATCGGTGAGGAGGAGATCCAGAAGCCAGAGGAAAAGGTGACCTGGGATGGCCACTCAGGCAGCATGGCCCGGACCCAGCAGGCTGCCCA GGCCAACATCACCCTCCAGGAGCAGATTGAGGCCATTCACAAGGCCAAAGGCCTGGTGCCAGAGGATGACACTAAAGAGAAGATTGGCCC CAGCAAGCCCAATGAAATCCCTCAACAGCCACCGCCACCATCTTCAGCCACCAACATCCCCAGCTCGGCTCCACCCATCACTTCAGTGCC CCGACCACCCACAATGCCACCTCCAGTTCGTACTACAGTTGTCTCCGCAGTACCCGTCATGCCCCGGCCCCCAATGGCATCTGTGGTCCG GCTGCCCCCAGGCTCAGTGATCGCCCCCATGCCGCCCATCATCCACGCGCCCAGAATCAACGTGGTGCCCATGCCTCCCTCGGCCCCTCC TATTATGGCCCCCCGCCCACCCCCCATGATTGTGCCAACAGCCTTTGTGCCTGCTCCACCTGTGGCACCTGTCCCAGCTCCAGCCCCAAT GCCCCCTGTGCATCCCCCACCTCCCATGGAAGATGAGCCCACCTCCAAAAAACTGAAGACAGAGGACAGCCTCATGCCAGAGGAGGAGTT CCTGCGCAGAAACAAGGGTCCAGTGTCCATCAAAGTCCAGGTGCCCAACATGCAGGATAAGACGGAATGGAAACTGAATGGGCAGGTGCT GGTCTTCACCCTCCCACTCACGGACCAGGTCTCTGTCATTAAGGTGAAGATTCATGAAGCCACAGGCATGCCTGCAGGGAAACAGAAGCT ACAGTATGAGGGTATCTTCATCAAAGATTCCAACTCACTGGCTTACTACAACATGGCCAATGGCGCAGTCATCCACCTGGCCCTCAAGGA |
| * Fusion transcript sequences (Full-length transcript). |
| >In-frame_VPS28_ENST00000526054_chr8_145649000_-_SF3A1_ENST00000215793_chr22_30742508_-_5695nt CCAGGTCTCAGTGCTGTGCCCCCCCCAGAGCCTAGAGGATGTTTCATGGGATCCCAGCCACGCCGGGCATAGGAGCCCCTGGGAACAAGC CGGAGCTGTATGAGGAAGTGAAGTTGTACAAGAACGCCCGGGAGAGGGAGAAGTACGACAACATGGCAGAGCTGTTTGCGGTGGTGAAGA CAATGCAAGCCCTGGAGAAGGCCTACATCAAGGACTGTGTCTCCCCCAGCGAGTACACTGCAGCCTGCTCCCGGCTCCTGGTCCAATACA AAGCTGCCTTCAGGCAGGTCCAGGGCTCAGAAATCAGCTCTATTGACGAATTCTGCCGCAAGTTCCGCCTGGACTGCCCGCTGGCCATGG AGCGGATCAAGGAGGACCGGCCCATCACCATCAAGGACGACAAGGGCAACCTCAACCGCTGCATCGCAGACGTGGTCTCGCTCTTCATCA CGGTCATGGACAAGCTGCGCCTGGAGATCCGCGCCATGGATGAGATCCAGCCCGACCTGCGAGAGCTGATGGAGACCATGCACCGCATGA GCCACCTCCCACCCGACTTTGAGGGCCGCCAGACGGTCAGCCAGTGGCTGCAGACCCTGAGCGGCATGTCGGCGTCAGATGAGCTGGACG ACTCACAGGTGCGTCAGATGCTGTTCGACCTGGAGTCAGCCTACAACGCCTTCAACCGCTTCCTGCATGCCTGAGCCCGGGGCACTAGCC CTTGCACAGAAGGGCAGAGTCTGAGGCGATGGCTCCTGGTCCCCTGTCCGCCACACAGGCCGTGGTCATCCACACAACTCACTGTCTGCA GCTGCCTGTCTGGTGTCTGTCTTTGGTGTCAGAACTTTGGGGGCCGGGCCCCTCCCCACAATAAAGATGCTCTCCGACCTTCAAACGGGC CTGAATTTGAAGCTAGGATCCGACAGAACGAGATCAACAACCCCAAGTTCAACTTTCTGAACCCCAATGACCCTTACCATGCCTACTACC GCCACAAGGTCAGCGAGTTCAAGGAAGGGAAGGCTCAGGAGCCGTCCGCCGCCATCCCCAAGGTCATGCAGCAGCAGCAGCAGACCACCC AGCAGCAGCTGCCCCAGAAGGTCCAAGCCCAAGTAATCCAAGAGACCATCGTGCCCAAAGAGCCTCCTCCTGAGTTTGAGTTCATTGCTG ATCCTCCCTCTATCTCAGCCTTCGACTTGGATGTGGTGAAGCTGACGGCTCAGTTTGTGGCCAGGAATGGGCGCCAGTTTCTGACCCAGC TGATGCAGAAAGAGCAGCGCAACTACCAGTTTGACTTTCTCCGCCCACAGCACAGCCTCTTCAACTACTTCACGAAGCTAGTGGAACAGT ACACCAAGATCTTGATTCCACCCAAAGGTTTATTTTCAAAGCTCAAGAAAGAGGCTGAAAACCCCCGAGAAGTTTTGGATCAGGTGTGTT ACCGAGTGGAATGGGCCAAATTCCAGGAACGTGAGAGGAAGAAGGAAGAAGAGGAGAAGGAGAAGGAGCGGGTGGCCTATGCTCAGATCG ACTGGCATGATTTTGTGGTGGTGGAAACAGTGGACTTCCAACCCAATGAGCAAGGGAACTTCCCTCCCCCCACCACGCCAGAGGAGCTGG GGGCCCGAATCCTCATTCAGGAGCGCTATGAAAAGTTTGGGGAGAGTGAGGAAGTTGAGATGGAGGTCGAGTCTGATGAGGAGGATGACA AACAGGAGAAGGCGGAGGAGCCTCCTTCCCAGCTGGACCAGGACACCCAAGTACAAGATATGGATGAGGGTTCAGATGATGAAGAAGAAG GGCAGAAAGTGCCCCCACCCCCAGAGACACCCATGCCTCCACCTCTGCCCCCAACTCCAGACCAAGTCATTGTCCGCAAGGATTATGATC CCAAAGCCTCCAAGCCCTTGCCTCCAGCCCCTGCTCCAGATGAGTATCTTGTGTCCCCCATTACTGGGGAGAAGATCCCCGCCAGCAAAA TGCAGGAACACATGCGCATTGGACTTCTTGACCCTCGCTGGCTGGAGCAGCGGGATCGCTCCATCCGTGAGAAGCAGAGCGATGATGAGG TGTACGCACCAGGTCTGGATATTGAGAGCAGCTTGAAGCAGTTGGCTGAGCGGCGTACTGACATCTTCGGTGTAGAGGAAACAGCCATTG GTAAGAAGATCGGTGAGGAGGAGATCCAGAAGCCAGAGGAAAAGGTGACCTGGGATGGCCACTCAGGCAGCATGGCCCGGACCCAGCAGG CTGCCCAGGCCAACATCACCCTCCAGGAGCAGATTGAGGCCATTCACAAGGCCAAAGGCCTGGTGCCAGAGGATGACACTAAAGAGAAGA TTGGCCCCAGCAAGCCCAATGAAATCCCTCAACAGCCACCGCCACCATCTTCAGCCACCAACATCCCCAGCTCGGCTCCACCCATCACTT CAGTGCCCCGACCACCCACAATGCCACCTCCAGTTCGTACTACAGTTGTCTCCGCAGTACCCGTCATGCCCCGGCCCCCAATGGCATCTG TGGTCCGGCTGCCCCCAGGCTCAGTGATCGCCCCCATGCCGCCCATCATCCACGCGCCCAGAATCAACGTGGTGCCCATGCCTCCCTCGG CCCCTCCTATTATGGCCCCCCGCCCACCCCCCATGATTGTGCCAACAGCCTTTGTGCCTGCTCCACCTGTGGCACCTGTCCCAGCTCCAG CCCCAATGCCCCCTGTGCATCCCCCACCTCCCATGGAAGATGAGCCCACCTCCAAAAAACTGAAGACAGAGGACAGCCTCATGCCAGAGG AGGAGTTCCTGCGCAGAAACAAGGGTCCAGTGTCCATCAAAGTCCAGGTGCCCAACATGCAGGATAAGACGGAATGGAAACTGAATGGGC AGGTGCTGGTCTTCACCCTCCCACTCACGGACCAGGTCTCTGTCATTAAGGTGAAGATTCATGAAGCCACAGGCATGCCTGCAGGGAAAC AGAAGCTACAGTATGAGGGTATCTTCATCAAAGATTCCAACTCACTGGCTTACTACAACATGGCCAATGGCGCAGTCATCCACCTGGCCC TCAAGGAGAGAGGCGGGAGGAAGAAGTAGACAAGAGGAACCTGCTGTCAAGTCCCTGCCATTTTGCCTCTCCTGTCTCCCACCCCCTGCC CCAGACCCAGGAGCCCCCCTGAGGCTTTGCCTTGCCTGCATATTTGTTTCGCTCTTACTCAGTTTGGGAATTCAAATTGTCCTGCAGAGG TTCATTCCCCTGACCCTTTCCCCACATTGGTAAGAGTAGCTGGGTTTTCTAAGCCACTCTCTGGAATCTCTTTGTGTTAGGGTCTCGATT TGAGGACATTCATTTCTTCAGCAGCCCATTAGCAACTGAGAGCCCAGGGATGTCCTACAGGATAGTTTCATAGTGACAGGTGGCACTTGG CTAATAGAATATGGCTGATATTGTCATTAATCATTTTGTACCTTGACATGGGTTGTCTAATAAAACTCGGACCCTTCTTGTGAAATCAGT TAAATAAGACTTGTCTCGGTCACCTGTGCCCTGTCCAGACTCGAGGCAGTGGTAACACTGCACAGTGCTATGTGGCTTCTCTTTGAGGAT TTTTGGGTTTTGTAACTAAATTCTTGCTGCCCTCATACTTTTTATGTATTAGAATCATATTCGTATTGCCCTTTTAAAACATTGGGATCC TCCAAAGGCCTGCCCCATGTATTTAACAGTAATACAGGAAGCATGGCAGGCACCATGCAAACCAAGGATGGATGGTGCAGTCCCTGTGTC AGTGGGCGGTGGTTTCCTGCTGGCCTGGAATCACTCATCACCTGATTGATTGGCTCTGTGGTCCTGGGCAGGTGCCTCATAGGTGTGTGG ATATGATGACGTTTCTTTAAAATGTATGTATTTAACAAATACTTAATTGTATTAAGGTCATGTACCAAGGATTTGATAAAGTTTAAATAA TTTACTCTCTACTTTTATCCATTTTATCCATTTTAACTCATGTAATCCTCATGTGAGTATTCCTGTTTAACACTTGAGTAAACTGAGGCA CAGAGAACATAAGTTGCATGCCATAGTCACACACTGTGAAAGTGAAAAGAGAATGTGTGCAAAACACGTCACAGTCCTGGTTTCTGAGTA AAGGCAGGCTGTTATCTTTAGAATCAAGCTATCACAGGGAGATAGGCAATGCTGTGGGTGTTGGAGGAAGGTGAGAGCCTGTTGCTAACA ATTTCCTGGTTTTAAAGCTAAGGCTGATTTTATTGGGAAGATCTCACATGTGTGTGGCCCCTGAGAGTTCCCAGTGCCTTTTATTTGCAG TCCTTCCATTTGGACCTCCTAGCTGCCCCATCAGGTCATCTCCAGGGCTCAGAGGGGTGAGACCATTTCCCAAGGTCACAGAACCAGCTC TCTAGTCACCACCCTGCCTCTCCCTCTCACCCAGAGTCAGTACCAGTTTTATGGCTTTATTACAAACTGCTGGGTCCCTCCCATTTTCAA CTTGATTGATGGGATGTCATCCCTTATCCTGTCTGACATTTGCCTCTGGCCTGGTTGCTAGAAGTTTGCCCCAGGGGCAAGAGTTGAAAT TTGGCTTCCTGAGGTGGGCTTTGTGGTTTGCGTCCCTAAAGTGAGCCCACTACTGGTTGCTTGTCCATGGCCAACACCAGAAATCCCCTG AGCACTACCTGGGTCTCATTCCAAGAAGGAAGAGGGTCAGGAGACCTGGGGAGTCTCATATTCCAAGTTCTTCTTTCTTTCTGGGAGCAG TGGGCAGTTCATGGTGTTAGGGCACTCACCCCCACAGACTGGCAAACCCTGCAGGACTTCCGTGGCTGAGGCTGTGACCGGAGGCCAGGA ATGCCGTTGGGTGGATTGTGAGTGAATGGGCCCTTTGAGCTGCCCTCTAGAGAGCAAATCCAGTTTCCTGGAGCTCCTGAATGAATATCT GTACTGGCTCGCTCAGATGCAGAAGCTCCATTGACCATGAGGCCTTGTGAACATCAGTGGCCACAGGCCCAGTGTGCTGCTTGGCACTGC ACTAGTTTAGGACCTGCAGCATGTAGGTAGCGTCCTAGTGTTTATAATACAAAGCTGCTCTGCACAGCTTTTCTGATTCTTCTTGCAATC TCCTGAGGATTATCTGCCCCATTTTTAAAACGAGGTGGAATACCCAAGGTCATGTAGCCAGTGAGTGCTCTGGAAAGCCAAAGCAGCTCA TCCCTTCCTGGGGACCACACTGCTCTGCTCCACCAGACCACACTATGAAATAGGAATAAGTGCTCCTGTTGCAGGACTGCTGGGAAAACA GGTGGTGTGGGACTTAAGTCACCATAATTTTGAAGACTTGCATGCAGAGGGCTCCAGGAATTGTAGACATTAAGGAATTTCACTTTCAGT TCTACCCACTACTTAAGTACTTGTCATGTACTCTTAGAGGAGGCCAGTAATGATCAGAACCATTTTACTTTAAAATTAATAATATTGTAT TAGAGAATATATTAAATGGTTATATTGGGTTATGTTAGGATATATACTTGAATGGAAATACATGTACTATTAGCAATCATATTTCATTTA TCCCTGTAATTAGACAAGAAAGCATAATATAGCTCTACTCATGGGTACACATACCAGTGTATAAGATTTTTAGAAGTTTACTTTTTAAAA >In-frame_VPS28_ENST00000526054_chr8_145649000_-_SF3A1_ENST00000439242_chr22_30742508_-_5498nt CCAGGTCTCAGTGCTGTGCCCCCCCCAGAGCCTAGAGGATGTTTCATGGGATCCCAGCCACGCCGGGCATAGGAGCCCCTGGGAACAAGC CGGAGCTGTATGAGGAAGTGAAGTTGTACAAGAACGCCCGGGAGAGGGAGAAGTACGACAACATGGCAGAGCTGTTTGCGGTGGTGAAGA CAATGCAAGCCCTGGAGAAGGCCTACATCAAGGACTGTGTCTCCCCCAGCGAGTACACTGCAGCCTGCTCCCGGCTCCTGGTCCAATACA AAGCTGCCTTCAGGCAGGTCCAGGGCTCAGAAATCAGCTCTATTGACGAATTCTGCCGCAAGTTCCGCCTGGACTGCCCGCTGGCCATGG AGCGGATCAAGGAGGACCGGCCCATCACCATCAAGGACGACAAGGGCAACCTCAACCGCTGCATCGCAGACGTGGTCTCGCTCTTCATCA CGGTCATGGACAAGCTGCGCCTGGAGATCCGCGCCATGGATGAGATCCAGCCCGACCTGCGAGAGCTGATGGAGACCATGCACCGCATGA GCCACCTCCCACCCGACTTTGAGGGCCGCCAGACGGTCAGCCAGTGGCTGCAGACCCTGAGCGGCATGTCGGCGTCAGATGAGCTGGACG ACTCACAGGTGCGTCAGATGCTGTTCGACCTGGAGTCAGCCTACAACGCCTTCAACCGCTTCCTGCATGCCTGAGCCCGGGGCACTAGCC CTTGCACAGAAGGGCAGAGTCTGAGGCGATGGCTCCTGGTCCCCTGTCCGCCACACAGGCCGTGGTCATCCACACAACTCACTGTCTGCA GCTGCCTGTCTGGTGTCTGTCTTTGGTGTCAGAACTTTGGGGGCCGGGCCCCTCCCCACAATAAAGATGCTCTCCGACCTTCAAACGGGC CTGAATTTGAAGCTAGGATCCGACAGAACGAGATCAACAACCCCAAGTTCAACTTTCTGAACCCCAATGACCCTTACCATGCCTACTACC GCCACAAGGTCAGCGAGTTCAAGGAAGGGAAGGCTCAGTTTGTGGCCAGGAATGGGCGCCAGTTTCTGACCCAGCTGATGCAGAAAGAGC AGCGCAACTACCAGTTTGACTTTCTCCGCCCACAGCACAGCCTCTTCAACTACTTCACGAAGCTAGTGGAACAGTACACCAAGATCTTGA TTCCACCCAAAGGTTTATTTTCAAAGCTCAAGAAAGAGGCTGAAAACCCCCGAGAAGTTTTGGATCAGGTGTGTTACCGAGTGGAATGGG CCAAATTCCAGGAACGTGAGAGGAAGAAGGAAGAAGAGGAGAAGGAGAAGGAGCGGGTGGCCTATGCTCAGATCGACTGGCATGATTTTG TGGTGGTGGAAACAGTGGACTTCCAACCCAATGAGCAAGGGAACTTCCCTCCCCCCACCACGCCAGAGGAGCTGGGGGCCCGAATCCTCA TTCAGGAGCGCTATGAAAAGTTTGGGGAGAGTGAGGAAGTTGAGATGGAGGTCGAGTCTGATGAGGAGGATGACAAACAGGAGAAGGCGG AGGAGCCTCCTTCCCAGCTGGACCAGGACACCCAAGTACAAGATATGGATGAGGGTTCAGATGATGAAGAAGAAGGGCAGAAAGTGCCCC CACCCCCAGAGACACCCATGCCTCCACCTCTGCCCCCAACTCCAGACCAAGTCATTGTCCGCAAGGATTATGATCCCAAAGCCTCCAAGC CCTTGCCTCCAGCCCCTGCTCCAGATGAGTATCTTGTGTCCCCCATTACTGGGGAGAAGATCCCCGCCAGCAAAATGCAGGAACACATGC GCATTGGACTTCTTGACCCTCGCTGGCTGGAGCAGCGGGATCGCTCCATCCGTGAGAAGCAGAGCGATGATGAGGTGTACGCACCAGGTC TGGATATTGAGAGCAGCTTGAAGCAGTTGGCTGAGCGGCGTACTGACATCTTCGGTGTAGAGGAAACAGCCATTGGTAAGAAGATCGGTG AGGAGGAGATCCAGAAGCCAGAGGAAAAGGTGACCTGGGATGGCCACTCAGGCAGCATGGCCCGGACCCAGCAGGCTGCCCAGGCCAACA TCACCCTCCAGGAGCAGATTGAGGCCATTCACAAGGCCAAAGGCCTGGTGCCAGAGGATGACACTAAAGAGAAGATTGGCCCCAGCAAGC CCAATGAAATCCCTCAACAGCCACCGCCACCATCTTCAGCCACCAACATCCCCAGCTCGGCTCCACCCATCACTTCAGTGCCCCGACCAC CCACAATGCCACCTCCAGTTCGTACTACAGTTGTCTCCGCAGTACCCGTCATGCCCCGGCCCCCAATGGCATCTGTGGTCCGGCTGCCCC CAGGCTCAGTGATCGCCCCCATGCCGCCCATCATCCACGCGCCCAGAATCAACGTGGTGCCCATGCCTCCCTCGGCCCCTCCTATTATGG CCCCCCGCCCACCCCCCATGATTGTGCCAACAGCCTTTGTGCCTGCTCCACCTGTGGCACCTGTCCCAGCTCCAGCCCCAATGCCCCCTG TGCATCCCCCACCTCCCATGGAAGATGAGCCCACCTCCAAAAAACTGAAGACAGAGGACAGCCTCATGCCAGAGGAGGAGTTCCTGCGCA GAAACAAGGGTCCAGTGTCCATCAAAGTCCAGGTGCCCAACATGCAGGATAAGACGGAATGGAAACTGAATGGGCAGGTGCTGGTCTTCA CCCTCCCACTCACGGACCAGGTCTCTGTCATTAAGGTGAAGATTCATGAAGCCACAGGCATGCCTGCAGGGAAACAGAAGCTACAGTATG AGGGTATCTTCATCAAAGATTCCAACTCACTGGCTTACTACAACATGGCCAATGGCGCAGTCATCCACCTGGCCCTCAAGGAGAGAGGCG GGAGGAAGAAGTAGACAAGAGGAACCTGCTGTCAAGTCCCTGCCATTTTGCCTCTCCTGTCTCCCACCCCCTGCCCCAGACCCAGGAGCC CCCCTGAGGCTTTGCCTTGCCTGCATATTTGTTTCGCTCTTACTCAGTTTGGGAATTCAAATTGTCCTGCAGAGGTTCATTCCCCTGACC CTTTCCCCACATTGGTAAGAGTAGCTGGGTTTTCTAAGCCACTCTCTGGAATCTCTTTGTGTTAGGGTCTCGATTTGAGGACATTCATTT CTTCAGCAGCCCATTAGCAACTGAGAGCCCAGGGATGTCCTACAGGATAGTTTCATAGTGACAGGTGGCACTTGGCTAATAGAATATGGC TGATATTGTCATTAATCATTTTGTACCTTGACATGGGTTGTCTAATAAAACTCGGACCCTTCTTGTGAAATCAGTTAAATAAGACTTGTC TCGGTCACCTGTGCCCTGTCCAGACTCGAGGCAGTGGTAACACTGCACAGTGCTATGTGGCTTCTCTTTGAGGATTTTTGGGTTTTGTAA CTAAATTCTTGCTGCCCTCATACTTTTTATGTATTAGAATCATATTCGTATTGCCCTTTTAAAACATTGGGATCCTCCAAAGGCCTGCCC CATGTATTTAACAGTAATACAGGAAGCATGGCAGGCACCATGCAAACCAAGGATGGATGGTGCAGTCCCTGTGTCAGTGGGCGGTGGTTT CCTGCTGGCCTGGAATCACTCATCACCTGATTGATTGGCTCTGTGGTCCTGGGCAGGTGCCTCATAGGTGTGTGGATATGATGACGTTTC TTTAAAATGTATGTATTTAACAAATACTTAATTGTATTAAGGTCATGTACCAAGGATTTGATAAAGTTTAAATAATTTACTCTCTACTTT TATCCATTTTATCCATTTTAACTCATGTAATCCTCATGTGAGTATTCCTGTTTAACACTTGAGTAAACTGAGGCACAGAGAACATAAGTT GCATGCCATAGTCACACACTGTGAAAGTGAAAAGAGAATGTGTGCAAAACACGTCACAGTCCTGGTTTCTGAGTAAAGGCAGGCTGTTAT CTTTAGAATCAAGCTATCACAGGGAGATAGGCAATGCTGTGGGTGTTGGAGGAAGGTGAGAGCCTGTTGCTAACAATTTCCTGGTTTTAA AGCTAAGGCTGATTTTATTGGGAAGATCTCACATGTGTGTGGCCCCTGAGAGTTCCCAGTGCCTTTTATTTGCAGTCCTTCCATTTGGAC CTCCTAGCTGCCCCATCAGGTCATCTCCAGGGCTCAGAGGGGTGAGACCATTTCCCAAGGTCACAGAACCAGCTCTCTAGTCACCACCCT GCCTCTCCCTCTCACCCAGAGTCAGTACCAGTTTTATGGCTTTATTACAAACTGCTGGGTCCCTCCCATTTTCAACTTGATTGATGGGAT GTCATCCCTTATCCTGTCTGACATTTGCCTCTGGCCTGGTTGCTAGAAGTTTGCCCCAGGGGCAAGAGTTGAAATTTGGCTTCCTGAGGT GGGCTTTGTGGTTTGCGTCCCTAAAGTGAGCCCACTACTGGTTGCTTGTCCATGGCCAACACCAGAAATCCCCTGAGCACTACCTGGGTC TCATTCCAAGAAGGAAGAGGGTCAGGAGACCTGGGGAGTCTCATATTCCAAGTTCTTCTTTCTTTCTGGGAGCAGTGGGCAGTTCATGGT GTTAGGGCACTCACCCCCACAGACTGGCAAACCCTGCAGGACTTCCGTGGCTGAGGCTGTGACCGGAGGCCAGGAATGCCGTTGGGTGGA TTGTGAGTGAATGGGCCCTTTGAGCTGCCCTCTAGAGAGCAAATCCAGTTTCCTGGAGCTCCTGAATGAATATCTGTACTGGCTCGCTCA GATGCAGAAGCTCCATTGACCATGAGGCCTTGTGAACATCAGTGGCCACAGGCCCAGTGTGCTGCTTGGCACTGCACTAGTTTAGGACCT GCAGCATGTAGGTAGCGTCCTAGTGTTTATAATACAAAGCTGCTCTGCACAGCTTTTCTGATTCTTCTTGCAATCTCCTGAGGATTATCT GCCCCATTTTTAAAACGAGGTGGAATACCCAAGGTCATGTAGCCAGTGAGTGCTCTGGAAAGCCAAAGCAGCTCATCCCTTCCTGGGGAC CACACTGCTCTGCTCCACCAGACCACACTATGAAATAGGAATAAGTGCTCCTGTTGCAGGACTGCTGGGAAAACAGGTGGTGTGGGACTT AAGTCACCATAATTTTGAAGACTTGCATGCAGAGGGCTCCAGGAATTGTAGACATTAAGGAATTTCACTTTCAGTTCTACCCACTACTTA AGTACTTGTCATGTACTCTTAGAGGAGGCCAGTAATGATCAGAACCATTTTACTTTAAAATTAATAATATTGTATTAGAGAATATATTAA ATGGTTATATTGGGTTATGTTAGGATATATACTTGAATGGAAATACATGTACTATTAGCAATCATATTTCATTTATCCCTGTAATTAGAC AAGAAAGCATAATATAGCTCTACTCATGGGTACACATACCAGTGTATAAGATTTTTAGAAGTTTACTTTTTAAAAATAAAAGCAAAATGT >In-frame_VPS28_ENST00000292510_chr8_145649000_-_SF3A1_ENST00000215793_chr22_30742508_-_5747nt CGCTGACCGAGCGCACCCCGCCCCCGGCGCCATCTTCCCGACCGCGAGCCGTCCAGGTCTCAGTGCTGTGCCCCCCCCAGAGCCTAGAGG ATGTTTCATGGGATCCCAGCCACGCCGGGCATAGGAGCCCCTGGGAACAAGCCGGAGCTGTATGAGGAAGTGAAGTTGTACAAGAACGCC CGGGAGAGGGAGAAGTACGACAACATGGCAGAGCTGTTTGCGGTGGTGAAGACAATGCAAGCCCTGGAGAAGGCCTACATCAAGGACTGT GTCTCCCCCAGCGAGTACACTGCAGCCTGCTCCCGGCTCCTGGTCCAATACAAAGCTGCCTTCAGGCAGGTCCAGGGCTCAGAAATCAGC TCTATTGACGAATTCTGCCGCAAGTTCCGCCTGGACTGCCCGCTGGCCATGGAGCGGATCAAGGAGGACCGGCCCATCACCATCAAGGAC GACAAGGGCAACCTCAACCGCTGCATCGCAGACGTGGTCTCGCTCTTCATCACGGTCATGGACAAGCTGCGCCTGGAGATCCGCGCCATG GATGAGATCCAGCCCGACCTGCGAGAGCTGATGGAGACCATGCACCGCATGAGCCACCTCCCACCCGACTTTGAGGGCCGCCAGACGGTC AGCCAGTGGCTGCAGACCCTGAGCGGCATGTCGGCGTCAGATGAGCTGGACGACTCACAGGTGCGTCAGATGCTGTTCGACCTGGAGTCA GCCTACAACGCCTTCAACCGCTTCCTGCATGCCTGAGCCCGGGGCACTAGCCCTTGCACAGAAGGGCAGAGTCTGAGGCGATGGCTCCTG GTCCCCTGTCCGCCACACAGGCCGTGGTCATCCACACAACTCACTGTCTGCAGCTGCCTGTCTGGTGTCTGTCTTTGGTGTCAGAACTTT GGGGGCCGGGCCCCTCCCCACAATAAAGATGCTCTCCGACCTTCAAACGGGCCTGAATTTGAAGCTAGGATCCGACAGAACGAGATCAAC AACCCCAAGTTCAACTTTCTGAACCCCAATGACCCTTACCATGCCTACTACCGCCACAAGGTCAGCGAGTTCAAGGAAGGGAAGGCTCAG GAGCCGTCCGCCGCCATCCCCAAGGTCATGCAGCAGCAGCAGCAGACCACCCAGCAGCAGCTGCCCCAGAAGGTCCAAGCCCAAGTAATC CAAGAGACCATCGTGCCCAAAGAGCCTCCTCCTGAGTTTGAGTTCATTGCTGATCCTCCCTCTATCTCAGCCTTCGACTTGGATGTGGTG AAGCTGACGGCTCAGTTTGTGGCCAGGAATGGGCGCCAGTTTCTGACCCAGCTGATGCAGAAAGAGCAGCGCAACTACCAGTTTGACTTT CTCCGCCCACAGCACAGCCTCTTCAACTACTTCACGAAGCTAGTGGAACAGTACACCAAGATCTTGATTCCACCCAAAGGTTTATTTTCA AAGCTCAAGAAAGAGGCTGAAAACCCCCGAGAAGTTTTGGATCAGGTGTGTTACCGAGTGGAATGGGCCAAATTCCAGGAACGTGAGAGG AAGAAGGAAGAAGAGGAGAAGGAGAAGGAGCGGGTGGCCTATGCTCAGATCGACTGGCATGATTTTGTGGTGGTGGAAACAGTGGACTTC CAACCCAATGAGCAAGGGAACTTCCCTCCCCCCACCACGCCAGAGGAGCTGGGGGCCCGAATCCTCATTCAGGAGCGCTATGAAAAGTTT GGGGAGAGTGAGGAAGTTGAGATGGAGGTCGAGTCTGATGAGGAGGATGACAAACAGGAGAAGGCGGAGGAGCCTCCTTCCCAGCTGGAC CAGGACACCCAAGTACAAGATATGGATGAGGGTTCAGATGATGAAGAAGAAGGGCAGAAAGTGCCCCCACCCCCAGAGACACCCATGCCT CCACCTCTGCCCCCAACTCCAGACCAAGTCATTGTCCGCAAGGATTATGATCCCAAAGCCTCCAAGCCCTTGCCTCCAGCCCCTGCTCCA GATGAGTATCTTGTGTCCCCCATTACTGGGGAGAAGATCCCCGCCAGCAAAATGCAGGAACACATGCGCATTGGACTTCTTGACCCTCGC TGGCTGGAGCAGCGGGATCGCTCCATCCGTGAGAAGCAGAGCGATGATGAGGTGTACGCACCAGGTCTGGATATTGAGAGCAGCTTGAAG CAGTTGGCTGAGCGGCGTACTGACATCTTCGGTGTAGAGGAAACAGCCATTGGTAAGAAGATCGGTGAGGAGGAGATCCAGAAGCCAGAG GAAAAGGTGACCTGGGATGGCCACTCAGGCAGCATGGCCCGGACCCAGCAGGCTGCCCAGGCCAACATCACCCTCCAGGAGCAGATTGAG GCCATTCACAAGGCCAAAGGCCTGGTGCCAGAGGATGACACTAAAGAGAAGATTGGCCCCAGCAAGCCCAATGAAATCCCTCAACAGCCA CCGCCACCATCTTCAGCCACCAACATCCCCAGCTCGGCTCCACCCATCACTTCAGTGCCCCGACCACCCACAATGCCACCTCCAGTTCGT ACTACAGTTGTCTCCGCAGTACCCGTCATGCCCCGGCCCCCAATGGCATCTGTGGTCCGGCTGCCCCCAGGCTCAGTGATCGCCCCCATG CCGCCCATCATCCACGCGCCCAGAATCAACGTGGTGCCCATGCCTCCCTCGGCCCCTCCTATTATGGCCCCCCGCCCACCCCCCATGATT GTGCCAACAGCCTTTGTGCCTGCTCCACCTGTGGCACCTGTCCCAGCTCCAGCCCCAATGCCCCCTGTGCATCCCCCACCTCCCATGGAA GATGAGCCCACCTCCAAAAAACTGAAGACAGAGGACAGCCTCATGCCAGAGGAGGAGTTCCTGCGCAGAAACAAGGGTCCAGTGTCCATC AAAGTCCAGGTGCCCAACATGCAGGATAAGACGGAATGGAAACTGAATGGGCAGGTGCTGGTCTTCACCCTCCCACTCACGGACCAGGTC TCTGTCATTAAGGTGAAGATTCATGAAGCCACAGGCATGCCTGCAGGGAAACAGAAGCTACAGTATGAGGGTATCTTCATCAAAGATTCC AACTCACTGGCTTACTACAACATGGCCAATGGCGCAGTCATCCACCTGGCCCTCAAGGAGAGAGGCGGGAGGAAGAAGTAGACAAGAGGA ACCTGCTGTCAAGTCCCTGCCATTTTGCCTCTCCTGTCTCCCACCCCCTGCCCCAGACCCAGGAGCCCCCCTGAGGCTTTGCCTTGCCTG CATATTTGTTTCGCTCTTACTCAGTTTGGGAATTCAAATTGTCCTGCAGAGGTTCATTCCCCTGACCCTTTCCCCACATTGGTAAGAGTA GCTGGGTTTTCTAAGCCACTCTCTGGAATCTCTTTGTGTTAGGGTCTCGATTTGAGGACATTCATTTCTTCAGCAGCCCATTAGCAACTG AGAGCCCAGGGATGTCCTACAGGATAGTTTCATAGTGACAGGTGGCACTTGGCTAATAGAATATGGCTGATATTGTCATTAATCATTTTG TACCTTGACATGGGTTGTCTAATAAAACTCGGACCCTTCTTGTGAAATCAGTTAAATAAGACTTGTCTCGGTCACCTGTGCCCTGTCCAG ACTCGAGGCAGTGGTAACACTGCACAGTGCTATGTGGCTTCTCTTTGAGGATTTTTGGGTTTTGTAACTAAATTCTTGCTGCCCTCATAC TTTTTATGTATTAGAATCATATTCGTATTGCCCTTTTAAAACATTGGGATCCTCCAAAGGCCTGCCCCATGTATTTAACAGTAATACAGG AAGCATGGCAGGCACCATGCAAACCAAGGATGGATGGTGCAGTCCCTGTGTCAGTGGGCGGTGGTTTCCTGCTGGCCTGGAATCACTCAT CACCTGATTGATTGGCTCTGTGGTCCTGGGCAGGTGCCTCATAGGTGTGTGGATATGATGACGTTTCTTTAAAATGTATGTATTTAACAA ATACTTAATTGTATTAAGGTCATGTACCAAGGATTTGATAAAGTTTAAATAATTTACTCTCTACTTTTATCCATTTTATCCATTTTAACT CATGTAATCCTCATGTGAGTATTCCTGTTTAACACTTGAGTAAACTGAGGCACAGAGAACATAAGTTGCATGCCATAGTCACACACTGTG AAAGTGAAAAGAGAATGTGTGCAAAACACGTCACAGTCCTGGTTTCTGAGTAAAGGCAGGCTGTTATCTTTAGAATCAAGCTATCACAGG GAGATAGGCAATGCTGTGGGTGTTGGAGGAAGGTGAGAGCCTGTTGCTAACAATTTCCTGGTTTTAAAGCTAAGGCTGATTTTATTGGGA AGATCTCACATGTGTGTGGCCCCTGAGAGTTCCCAGTGCCTTTTATTTGCAGTCCTTCCATTTGGACCTCCTAGCTGCCCCATCAGGTCA TCTCCAGGGCTCAGAGGGGTGAGACCATTTCCCAAGGTCACAGAACCAGCTCTCTAGTCACCACCCTGCCTCTCCCTCTCACCCAGAGTC AGTACCAGTTTTATGGCTTTATTACAAACTGCTGGGTCCCTCCCATTTTCAACTTGATTGATGGGATGTCATCCCTTATCCTGTCTGACA TTTGCCTCTGGCCTGGTTGCTAGAAGTTTGCCCCAGGGGCAAGAGTTGAAATTTGGCTTCCTGAGGTGGGCTTTGTGGTTTGCGTCCCTA AAGTGAGCCCACTACTGGTTGCTTGTCCATGGCCAACACCAGAAATCCCCTGAGCACTACCTGGGTCTCATTCCAAGAAGGAAGAGGGTC AGGAGACCTGGGGAGTCTCATATTCCAAGTTCTTCTTTCTTTCTGGGAGCAGTGGGCAGTTCATGGTGTTAGGGCACTCACCCCCACAGA CTGGCAAACCCTGCAGGACTTCCGTGGCTGAGGCTGTGACCGGAGGCCAGGAATGCCGTTGGGTGGATTGTGAGTGAATGGGCCCTTTGA GCTGCCCTCTAGAGAGCAAATCCAGTTTCCTGGAGCTCCTGAATGAATATCTGTACTGGCTCGCTCAGATGCAGAAGCTCCATTGACCAT GAGGCCTTGTGAACATCAGTGGCCACAGGCCCAGTGTGCTGCTTGGCACTGCACTAGTTTAGGACCTGCAGCATGTAGGTAGCGTCCTAG TGTTTATAATACAAAGCTGCTCTGCACAGCTTTTCTGATTCTTCTTGCAATCTCCTGAGGATTATCTGCCCCATTTTTAAAACGAGGTGG AATACCCAAGGTCATGTAGCCAGTGAGTGCTCTGGAAAGCCAAAGCAGCTCATCCCTTCCTGGGGACCACACTGCTCTGCTCCACCAGAC CACACTATGAAATAGGAATAAGTGCTCCTGTTGCAGGACTGCTGGGAAAACAGGTGGTGTGGGACTTAAGTCACCATAATTTTGAAGACT TGCATGCAGAGGGCTCCAGGAATTGTAGACATTAAGGAATTTCACTTTCAGTTCTACCCACTACTTAAGTACTTGTCATGTACTCTTAGA GGAGGCCAGTAATGATCAGAACCATTTTACTTTAAAATTAATAATATTGTATTAGAGAATATATTAAATGGTTATATTGGGTTATGTTAG GATATATACTTGAATGGAAATACATGTACTATTAGCAATCATATTTCATTTATCCCTGTAATTAGACAAGAAAGCATAATATAGCTCTAC >In-frame_VPS28_ENST00000292510_chr8_145649000_-_SF3A1_ENST00000439242_chr22_30742508_-_5550nt CGCTGACCGAGCGCACCCCGCCCCCGGCGCCATCTTCCCGACCGCGAGCCGTCCAGGTCTCAGTGCTGTGCCCCCCCCAGAGCCTAGAGG ATGTTTCATGGGATCCCAGCCACGCCGGGCATAGGAGCCCCTGGGAACAAGCCGGAGCTGTATGAGGAAGTGAAGTTGTACAAGAACGCC CGGGAGAGGGAGAAGTACGACAACATGGCAGAGCTGTTTGCGGTGGTGAAGACAATGCAAGCCCTGGAGAAGGCCTACATCAAGGACTGT GTCTCCCCCAGCGAGTACACTGCAGCCTGCTCCCGGCTCCTGGTCCAATACAAAGCTGCCTTCAGGCAGGTCCAGGGCTCAGAAATCAGC TCTATTGACGAATTCTGCCGCAAGTTCCGCCTGGACTGCCCGCTGGCCATGGAGCGGATCAAGGAGGACCGGCCCATCACCATCAAGGAC GACAAGGGCAACCTCAACCGCTGCATCGCAGACGTGGTCTCGCTCTTCATCACGGTCATGGACAAGCTGCGCCTGGAGATCCGCGCCATG GATGAGATCCAGCCCGACCTGCGAGAGCTGATGGAGACCATGCACCGCATGAGCCACCTCCCACCCGACTTTGAGGGCCGCCAGACGGTC AGCCAGTGGCTGCAGACCCTGAGCGGCATGTCGGCGTCAGATGAGCTGGACGACTCACAGGTGCGTCAGATGCTGTTCGACCTGGAGTCA GCCTACAACGCCTTCAACCGCTTCCTGCATGCCTGAGCCCGGGGCACTAGCCCTTGCACAGAAGGGCAGAGTCTGAGGCGATGGCTCCTG GTCCCCTGTCCGCCACACAGGCCGTGGTCATCCACACAACTCACTGTCTGCAGCTGCCTGTCTGGTGTCTGTCTTTGGTGTCAGAACTTT GGGGGCCGGGCCCCTCCCCACAATAAAGATGCTCTCCGACCTTCAAACGGGCCTGAATTTGAAGCTAGGATCCGACAGAACGAGATCAAC AACCCCAAGTTCAACTTTCTGAACCCCAATGACCCTTACCATGCCTACTACCGCCACAAGGTCAGCGAGTTCAAGGAAGGGAAGGCTCAG TTTGTGGCCAGGAATGGGCGCCAGTTTCTGACCCAGCTGATGCAGAAAGAGCAGCGCAACTACCAGTTTGACTTTCTCCGCCCACAGCAC AGCCTCTTCAACTACTTCACGAAGCTAGTGGAACAGTACACCAAGATCTTGATTCCACCCAAAGGTTTATTTTCAAAGCTCAAGAAAGAG GCTGAAAACCCCCGAGAAGTTTTGGATCAGGTGTGTTACCGAGTGGAATGGGCCAAATTCCAGGAACGTGAGAGGAAGAAGGAAGAAGAG GAGAAGGAGAAGGAGCGGGTGGCCTATGCTCAGATCGACTGGCATGATTTTGTGGTGGTGGAAACAGTGGACTTCCAACCCAATGAGCAA GGGAACTTCCCTCCCCCCACCACGCCAGAGGAGCTGGGGGCCCGAATCCTCATTCAGGAGCGCTATGAAAAGTTTGGGGAGAGTGAGGAA GTTGAGATGGAGGTCGAGTCTGATGAGGAGGATGACAAACAGGAGAAGGCGGAGGAGCCTCCTTCCCAGCTGGACCAGGACACCCAAGTA CAAGATATGGATGAGGGTTCAGATGATGAAGAAGAAGGGCAGAAAGTGCCCCCACCCCCAGAGACACCCATGCCTCCACCTCTGCCCCCA ACTCCAGACCAAGTCATTGTCCGCAAGGATTATGATCCCAAAGCCTCCAAGCCCTTGCCTCCAGCCCCTGCTCCAGATGAGTATCTTGTG TCCCCCATTACTGGGGAGAAGATCCCCGCCAGCAAAATGCAGGAACACATGCGCATTGGACTTCTTGACCCTCGCTGGCTGGAGCAGCGG GATCGCTCCATCCGTGAGAAGCAGAGCGATGATGAGGTGTACGCACCAGGTCTGGATATTGAGAGCAGCTTGAAGCAGTTGGCTGAGCGG CGTACTGACATCTTCGGTGTAGAGGAAACAGCCATTGGTAAGAAGATCGGTGAGGAGGAGATCCAGAAGCCAGAGGAAAAGGTGACCTGG GATGGCCACTCAGGCAGCATGGCCCGGACCCAGCAGGCTGCCCAGGCCAACATCACCCTCCAGGAGCAGATTGAGGCCATTCACAAGGCC AAAGGCCTGGTGCCAGAGGATGACACTAAAGAGAAGATTGGCCCCAGCAAGCCCAATGAAATCCCTCAACAGCCACCGCCACCATCTTCA GCCACCAACATCCCCAGCTCGGCTCCACCCATCACTTCAGTGCCCCGACCACCCACAATGCCACCTCCAGTTCGTACTACAGTTGTCTCC GCAGTACCCGTCATGCCCCGGCCCCCAATGGCATCTGTGGTCCGGCTGCCCCCAGGCTCAGTGATCGCCCCCATGCCGCCCATCATCCAC GCGCCCAGAATCAACGTGGTGCCCATGCCTCCCTCGGCCCCTCCTATTATGGCCCCCCGCCCACCCCCCATGATTGTGCCAACAGCCTTT GTGCCTGCTCCACCTGTGGCACCTGTCCCAGCTCCAGCCCCAATGCCCCCTGTGCATCCCCCACCTCCCATGGAAGATGAGCCCACCTCC AAAAAACTGAAGACAGAGGACAGCCTCATGCCAGAGGAGGAGTTCCTGCGCAGAAACAAGGGTCCAGTGTCCATCAAAGTCCAGGTGCCC AACATGCAGGATAAGACGGAATGGAAACTGAATGGGCAGGTGCTGGTCTTCACCCTCCCACTCACGGACCAGGTCTCTGTCATTAAGGTG AAGATTCATGAAGCCACAGGCATGCCTGCAGGGAAACAGAAGCTACAGTATGAGGGTATCTTCATCAAAGATTCCAACTCACTGGCTTAC TACAACATGGCCAATGGCGCAGTCATCCACCTGGCCCTCAAGGAGAGAGGCGGGAGGAAGAAGTAGACAAGAGGAACCTGCTGTCAAGTC CCTGCCATTTTGCCTCTCCTGTCTCCCACCCCCTGCCCCAGACCCAGGAGCCCCCCTGAGGCTTTGCCTTGCCTGCATATTTGTTTCGCT CTTACTCAGTTTGGGAATTCAAATTGTCCTGCAGAGGTTCATTCCCCTGACCCTTTCCCCACATTGGTAAGAGTAGCTGGGTTTTCTAAG CCACTCTCTGGAATCTCTTTGTGTTAGGGTCTCGATTTGAGGACATTCATTTCTTCAGCAGCCCATTAGCAACTGAGAGCCCAGGGATGT CCTACAGGATAGTTTCATAGTGACAGGTGGCACTTGGCTAATAGAATATGGCTGATATTGTCATTAATCATTTTGTACCTTGACATGGGT TGTCTAATAAAACTCGGACCCTTCTTGTGAAATCAGTTAAATAAGACTTGTCTCGGTCACCTGTGCCCTGTCCAGACTCGAGGCAGTGGT AACACTGCACAGTGCTATGTGGCTTCTCTTTGAGGATTTTTGGGTTTTGTAACTAAATTCTTGCTGCCCTCATACTTTTTATGTATTAGA ATCATATTCGTATTGCCCTTTTAAAACATTGGGATCCTCCAAAGGCCTGCCCCATGTATTTAACAGTAATACAGGAAGCATGGCAGGCAC CATGCAAACCAAGGATGGATGGTGCAGTCCCTGTGTCAGTGGGCGGTGGTTTCCTGCTGGCCTGGAATCACTCATCACCTGATTGATTGG CTCTGTGGTCCTGGGCAGGTGCCTCATAGGTGTGTGGATATGATGACGTTTCTTTAAAATGTATGTATTTAACAAATACTTAATTGTATT AAGGTCATGTACCAAGGATTTGATAAAGTTTAAATAATTTACTCTCTACTTTTATCCATTTTATCCATTTTAACTCATGTAATCCTCATG TGAGTATTCCTGTTTAACACTTGAGTAAACTGAGGCACAGAGAACATAAGTTGCATGCCATAGTCACACACTGTGAAAGTGAAAAGAGAA TGTGTGCAAAACACGTCACAGTCCTGGTTTCTGAGTAAAGGCAGGCTGTTATCTTTAGAATCAAGCTATCACAGGGAGATAGGCAATGCT GTGGGTGTTGGAGGAAGGTGAGAGCCTGTTGCTAACAATTTCCTGGTTTTAAAGCTAAGGCTGATTTTATTGGGAAGATCTCACATGTGT GTGGCCCCTGAGAGTTCCCAGTGCCTTTTATTTGCAGTCCTTCCATTTGGACCTCCTAGCTGCCCCATCAGGTCATCTCCAGGGCTCAGA GGGGTGAGACCATTTCCCAAGGTCACAGAACCAGCTCTCTAGTCACCACCCTGCCTCTCCCTCTCACCCAGAGTCAGTACCAGTTTTATG GCTTTATTACAAACTGCTGGGTCCCTCCCATTTTCAACTTGATTGATGGGATGTCATCCCTTATCCTGTCTGACATTTGCCTCTGGCCTG GTTGCTAGAAGTTTGCCCCAGGGGCAAGAGTTGAAATTTGGCTTCCTGAGGTGGGCTTTGTGGTTTGCGTCCCTAAAGTGAGCCCACTAC TGGTTGCTTGTCCATGGCCAACACCAGAAATCCCCTGAGCACTACCTGGGTCTCATTCCAAGAAGGAAGAGGGTCAGGAGACCTGGGGAG TCTCATATTCCAAGTTCTTCTTTCTTTCTGGGAGCAGTGGGCAGTTCATGGTGTTAGGGCACTCACCCCCACAGACTGGCAAACCCTGCA GGACTTCCGTGGCTGAGGCTGTGACCGGAGGCCAGGAATGCCGTTGGGTGGATTGTGAGTGAATGGGCCCTTTGAGCTGCCCTCTAGAGA GCAAATCCAGTTTCCTGGAGCTCCTGAATGAATATCTGTACTGGCTCGCTCAGATGCAGAAGCTCCATTGACCATGAGGCCTTGTGAACA TCAGTGGCCACAGGCCCAGTGTGCTGCTTGGCACTGCACTAGTTTAGGACCTGCAGCATGTAGGTAGCGTCCTAGTGTTTATAATACAAA GCTGCTCTGCACAGCTTTTCTGATTCTTCTTGCAATCTCCTGAGGATTATCTGCCCCATTTTTAAAACGAGGTGGAATACCCAAGGTCAT GTAGCCAGTGAGTGCTCTGGAAAGCCAAAGCAGCTCATCCCTTCCTGGGGACCACACTGCTCTGCTCCACCAGACCACACTATGAAATAG GAATAAGTGCTCCTGTTGCAGGACTGCTGGGAAAACAGGTGGTGTGGGACTTAAGTCACCATAATTTTGAAGACTTGCATGCAGAGGGCT CCAGGAATTGTAGACATTAAGGAATTTCACTTTCAGTTCTACCCACTACTTAAGTACTTGTCATGTACTCTTAGAGGAGGCCAGTAATGA TCAGAACCATTTTACTTTAAAATTAATAATATTGTATTAGAGAATATATTAAATGGTTATATTGGGTTATGTTAGGATATATACTTGAAT GGAAATACATGTACTATTAGCAATCATATTTCATTTATCCCTGTAATTAGACAAGAAAGCATAATATAGCTCTACTCATGGGTACACATA |
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FusionGenePPI for VPS28_SF3A1 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| VPS28 | VPS37A, TSG101, VPS37C, VPS37B, BCR, SNF8, VPS25, VPS36, ALG2, UBAP1, FN1, UBC, GOLGA2, TRIM27, VPS52, SKIL, SMN2, TCF4, TCF12, BLZF1, CBX5, MBIP, TRIM54, CARD9, RASSF5, USHBP1, PNMA5, FAM154A, INCA1, C22orf23, UBE2U, SLC25A41, COQ3, ABHD17A, ARRDC1, SCN2B, AKAP11, RGPD5, BRCA2, MVB12B, DCAF6, MAD1L1, HAUS8, MVB12A, STXBP4, NIF3L1, DPYSL2, HIP1R, CEP57L1, SMN1, XPO1, PARD6B, VPS37D, GRB2, SETX, PCP2, CASC5 | SF3A1 | TCERG1, ATG12, NCOR1, SF3A3, SF3A2, CDC5L, USP30, RAE1, TCEA1, MAP1LC3C, HDAC5, SIRT7, CUL3, CAND1, SF3B3, SNRPA1, SF3B1, SNRPD2, SF3B4, SNRPD1, SNRPB2, RBMX, SNRPA, SRSF1, SRSF5, SRSF7, PRPF8, SNRNP200, U2AF1, HNRNPR, HNRNPU, HNRNPM, DHX15, HNRNPC, HNRNPK, PRPF19, PRPF31, SART1, DDX5, USP39, PRPF3, DDX17, SRRM2, ACIN1, SKIV2L2, PLRG1, XAB2, MCM4, MCM7, SFPQ, MCM6, DYNC1H1, TRA2A, PSMD1, TRIM55, TPBG, ZNF326, RBM14, UTP14A, PSMA6, PSMB3, SSBP1, TSKS, PSMC1, THRAP3, PATL1, SUPT16H, VTN, ZC3H18, PSMB1, TOX4, RBM12B, PSMA5, VASN, PSMD7, TRMT112, SRP54, MDC1, MAGOH, EIF4A3, SMURF1, PRPF40A, RBM10, SF1, DDX42, WDR77, RBFOX2, CSNK2A1, IL7R, HDAC6, HDAC11, WBP4, APBB1, GAS7, WWOX, BRCC3, CCDC6, GAPVD1, HDAC1, NR3C1, PPP4R2, SMEK1, RPA3, RPA2, RPA1, ZBTB1, HUWE1, FUS, ENO1, MOV10, NXF1, CUL7, OBSL1, SUZ12, EED, RNF2, ABCE1, SERPINB5, RBM7, ZMAT3, RALYL, QPRT, LUC7L2, ACTL6A, ZRSR2, CYP1A1, ACTR1A, DDX46, EIF4G1, EPB41, GTF2F1, MCM5, PRPF6, FNBP1, FNBP1L, ISY1-RAB43, ISY1, PABPC1, PRPF4, TRIP10, SMARCC1, SMARCC2, U2SURP, ZNF830, NTRK1, SCARNA22, HIST1H3E, XRCC3, EMC2, ENTHD2, FOXQ1, SNW1, U2AF2, CCDC97, SNRPE, RBM17, SNRPG, HSPA8, SNRPN, CTSH, GM2A, C11orf57, CALML3, FGB, SNRPF, CST6, GTF2E2, TRMT2A, SNRNP27, MCM2, PA2G4, TRAP1, SND1, ANXA5, UBE2N, CYLD, CD2BP2, BRCA1 |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for VPS28_SF3A1 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for VPS28_SF3A1 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
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