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Fusion gene ID: 41327 |
FusionGeneSummary for VAMP2_TAF4 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: VAMP2_TAF4 | Fusion gene ID: 41327 | Hgene | Tgene | Gene symbol | VAMP2 | TAF4 | Gene ID | 6844 | 6874 |
| Gene name | vesicle associated membrane protein 2 | TATA-box binding protein associated factor 4 | |
| Synonyms | SYB2|VAMP-2 | TAF2C|TAF2C1|TAF4A|TAFII130|TAFII135 | |
| Cytomap | 17p13.1 | 20q13.33 | |
| Type of gene | protein-coding | protein-coding | |
| Description | vesicle-associated membrane protein 2synaptobrevin 2 | transcription initiation factor TFIID subunit 4RNA polymerase II TBP-associated factor subunit CTAF(II)130TAF(II)135TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDaTAF4A RNA polymerase II, TATA box binding protein (TBP | |
| Modification date | 20180523 | 20180523 | |
| UniProtAcc | P63027 | O00268 | |
| Ensembl transtripts involved in fusion gene | ENST00000316509, ENST00000404970, ENST00000488857, ENST00000481878, | ENST00000252996, ENST00000609045, | |
| Fusion gene scores | * DoF score | 5 X 5 X 1=25 | 5 X 6 X 2=60 |
| # samples | 5 | 12 | |
| ** MAII score | log2(5/25*10)=1 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(12/60*10)=1 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
| Context | PubMed: VAMP2 [Title/Abstract] AND TAF4 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Tgene | TAF4 | GO:0006352 | DNA-templated transcription, initiation | 9603525 |
| Tgene | TAF4 | GO:0006367 | transcription initiation from RNA polymerase II promoter | 9603525 |
| Tgene | TAF4 | GO:0045893 | positive regulation of transcription, DNA-templated | 12771217 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChiTaRS3.1 | BE272026 | VAMP2 | chr17 | 8063924 | + | TAF4 | chr20 | 60573216 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| intron-3CDS | ENST00000316509 | ENST00000252996 | VAMP2 | chr17 | 8063924 | + | TAF4 | chr20 | 60573216 | - |
| intron-intron | ENST00000316509 | ENST00000609045 | VAMP2 | chr17 | 8063924 | + | TAF4 | chr20 | 60573216 | - |
| intron-3CDS | ENST00000404970 | ENST00000252996 | VAMP2 | chr17 | 8063924 | + | TAF4 | chr20 | 60573216 | - |
| intron-intron | ENST00000404970 | ENST00000609045 | VAMP2 | chr17 | 8063924 | + | TAF4 | chr20 | 60573216 | - |
| intron-3CDS | ENST00000488857 | ENST00000252996 | VAMP2 | chr17 | 8063924 | + | TAF4 | chr20 | 60573216 | - |
| intron-intron | ENST00000488857 | ENST00000609045 | VAMP2 | chr17 | 8063924 | + | TAF4 | chr20 | 60573216 | - |
| intron-3CDS | ENST00000481878 | ENST00000252996 | VAMP2 | chr17 | 8063924 | + | TAF4 | chr20 | 60573216 | - |
| intron-intron | ENST00000481878 | ENST00000609045 | VAMP2 | chr17 | 8063924 | + | TAF4 | chr20 | 60573216 | - |
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FusionProtFeatures for VAMP2_TAF4 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| VAMP2 | TAF4 |
| Involved in the targeting and/or fusion of transportvesicles to their target membrane. Modulates the gatingcharacteristics of the delayed rectifier voltage-dependentpotassium channel KCNB1. {ECO:0000250|UniProtKB:P63045}. | Part of the TFIID complex, a multimeric protein complexthat plays a central role in mediating promoter responses tovarious activators and repressors. Potentiates transcriptionalactivation by the AF-2S of the retinoic acid, vitamin D3 andthyroid hormone. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for VAMP2_TAF4 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for VAMP2_TAF4 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for VAMP2_TAF4 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
| Hgene | VAMP2 | P63027 | DB00042 | Botulinum Toxin Type B | Vesicle-associated membrane protein 2 | biotech | approved|investigational |
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RelatedDiseases for VAMP2_TAF4 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Hgene | VAMP2 | C0005586 | Bipolar Disorder | 1 | PSYGENET |
| Hgene | VAMP2 | C0036341 | Schizophrenia | 1 | PSYGENET |
| Hgene | VAMP2 | C0041696 | Unipolar Depression | 1 | PSYGENET |
| Hgene | VAMP2 | C1269683 | Major Depressive Disorder | 1 | PSYGENET |
| Hgene | VAMP2 | C1839839 | MAJOR AFFECTIVE DISORDER 2 | 1 | PSYGENET |
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