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Fusion gene ID: 4122 |
FusionGeneSummary for BEST3_PTPRR |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: BEST3_PTPRR | Fusion gene ID: 4122 | Hgene | Tgene | Gene symbol | BEST3 | PTPRR | Gene ID | 144453 | 5801 |
| Gene name | bestrophin 3 | protein tyrosine phosphatase, receptor type R | |
| Synonyms | VMD2L3 | EC-PTP|PCPTP1|PTP-SL|PTPBR7|PTPRQ | |
| Cytomap | 12q15 | 12q15 | |
| Type of gene | protein-coding | protein-coding | |
| Description | bestrophin-3vitelliform macular dystrophy 2-like 3vitelliform macular dystrophy 2-like protein 3 | receptor-type tyrosine-protein phosphatase RCh-1 PTPaseNC-PTPCOM1R-PTP-Rch-1PTPaseprotein tyrosine phosphatase Cr1PTPaseprotein-tyrosine phosphatase NC-PTPCOM1protein-tyrosine phosphatase PCPTP1 | |
| Modification date | 20180523 | 20180519 | |
| UniProtAcc | Q8N1M1 | Q15256 | |
| Ensembl transtripts involved in fusion gene | ENST00000331471, ENST00000488961, ENST00000330891, ENST00000553096, ENST00000476098, ENST00000266661, ENST00000551160, ENST00000393365, ENST00000533674, | ENST00000283228, ENST00000440835, ENST00000537619, ENST00000378778, ENST00000342084, ENST00000549308, | |
| Fusion gene scores | * DoF score | 3 X 3 X 1=9 | 33 X 13 X 10=4290 |
| # samples | 3 | 31 | |
| ** MAII score | log2(3/9*10)=1.73696559416621 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(31/4290*10)=-3.79063752711267 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: BEST3 [Title/Abstract] AND PTPRR [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | RV | SARC | TCGA-3B-A9HS-01A | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| In-frame | ENST00000331471 | ENST00000283228 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| 5CDS-intron | ENST00000331471 | ENST00000440835 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| 5CDS-intron | ENST00000331471 | ENST00000537619 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| 5CDS-intron | ENST00000331471 | ENST00000378778 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| 5CDS-intron | ENST00000331471 | ENST00000342084 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| 5CDS-intron | ENST00000331471 | ENST00000549308 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| Frame-shift | ENST00000488961 | ENST00000283228 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| 5CDS-intron | ENST00000488961 | ENST00000440835 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| 5CDS-intron | ENST00000488961 | ENST00000537619 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| 5CDS-intron | ENST00000488961 | ENST00000378778 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| 5CDS-intron | ENST00000488961 | ENST00000342084 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| 5CDS-intron | ENST00000488961 | ENST00000549308 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| In-frame | ENST00000330891 | ENST00000283228 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| 5CDS-intron | ENST00000330891 | ENST00000440835 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| 5CDS-intron | ENST00000330891 | ENST00000537619 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| 5CDS-intron | ENST00000330891 | ENST00000378778 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| 5CDS-intron | ENST00000330891 | ENST00000342084 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| 5CDS-intron | ENST00000330891 | ENST00000549308 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| In-frame | ENST00000553096 | ENST00000283228 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| 5CDS-intron | ENST00000553096 | ENST00000440835 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| 5CDS-intron | ENST00000553096 | ENST00000537619 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| 5CDS-intron | ENST00000553096 | ENST00000378778 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| 5CDS-intron | ENST00000553096 | ENST00000342084 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| 5CDS-intron | ENST00000553096 | ENST00000549308 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| In-frame | ENST00000476098 | ENST00000283228 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| 5CDS-intron | ENST00000476098 | ENST00000440835 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| 5CDS-intron | ENST00000476098 | ENST00000537619 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| 5CDS-intron | ENST00000476098 | ENST00000378778 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| 5CDS-intron | ENST00000476098 | ENST00000342084 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| 5CDS-intron | ENST00000476098 | ENST00000549308 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| intron-3CDS | ENST00000266661 | ENST00000283228 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| intron-intron | ENST00000266661 | ENST00000440835 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| intron-intron | ENST00000266661 | ENST00000537619 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| intron-intron | ENST00000266661 | ENST00000378778 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| intron-intron | ENST00000266661 | ENST00000342084 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| intron-intron | ENST00000266661 | ENST00000549308 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| intron-3CDS | ENST00000551160 | ENST00000283228 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| intron-intron | ENST00000551160 | ENST00000440835 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| intron-intron | ENST00000551160 | ENST00000537619 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| intron-intron | ENST00000551160 | ENST00000378778 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| intron-intron | ENST00000551160 | ENST00000342084 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| intron-intron | ENST00000551160 | ENST00000549308 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| intron-3CDS | ENST00000393365 | ENST00000283228 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| intron-intron | ENST00000393365 | ENST00000440835 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| intron-intron | ENST00000393365 | ENST00000537619 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| intron-intron | ENST00000393365 | ENST00000378778 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| intron-intron | ENST00000393365 | ENST00000342084 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| intron-intron | ENST00000393365 | ENST00000549308 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| intron-3CDS | ENST00000533674 | ENST00000283228 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| intron-intron | ENST00000533674 | ENST00000440835 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| intron-intron | ENST00000533674 | ENST00000537619 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| intron-intron | ENST00000533674 | ENST00000378778 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| intron-intron | ENST00000533674 | ENST00000342084 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| intron-intron | ENST00000533674 | ENST00000549308 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
Top |
FusionProtFeatures for BEST3_PTPRR |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| BEST3 | PTPRR |
| Forms calcium-sensitive chloride channels. Permeable tobicarbonate. {ECO:0000269|PubMed:12907679}. | Sequesters mitogen-activated protein kinases (MAPKs)such as MAPK1, MAPK3 and MAPK14 in the cytoplasm in an inactiveform. The MAPKs bind to a dephosphorylated kinase interactingmotif, phosphorylation of which by the protein kinase A complexreleases the MAPKs for activation and translocation into thenucleus (By similarity). {ECO:0000250}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000330891 | - | 9 | 10 | 229_249 | 366 | 669 | Intramembrane | Ontology_term=ECO:0000255 |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000331471 | - | 9 | 10 | 229_249 | 366 | 399 | Intramembrane | Ontology_term=ECO:0000255 |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000330891 | - | 9 | 10 | 1_25 | 366 | 669 | Topological domain | Cytoplasmic |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000330891 | - | 9 | 10 | 200_228 | 366 | 669 | Topological domain | Extracellular |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000330891 | - | 9 | 10 | 250_270 | 366 | 669 | Topological domain | Extracellular |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000330891 | - | 9 | 10 | 47_70 | 366 | 669 | Topological domain | Extracellular |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000330891 | - | 9 | 10 | 92_178 | 366 | 669 | Topological domain | Cytoplasmic |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000331471 | - | 9 | 10 | 1_25 | 366 | 399 | Topological domain | Cytoplasmic |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000331471 | - | 9 | 10 | 200_228 | 366 | 399 | Topological domain | Extracellular |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000331471 | - | 9 | 10 | 250_270 | 366 | 399 | Topological domain | Extracellular |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000331471 | - | 9 | 10 | 47_70 | 366 | 399 | Topological domain | Extracellular |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000331471 | - | 9 | 10 | 92_178 | 366 | 399 | Topological domain | Cytoplasmic |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000488961 | - | 5 | 6 | 1_25 | 153 | 456 | Topological domain | Cytoplasmic |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000488961 | - | 5 | 6 | 47_70 | 153 | 456 | Topological domain | Extracellular |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000330891 | - | 9 | 10 | 179_199 | 366 | 669 | Transmembrane | Helical |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000330891 | - | 9 | 10 | 26_46 | 366 | 669 | Transmembrane | Helical |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000330891 | - | 9 | 10 | 271_291 | 366 | 669 | Transmembrane | Helical |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000330891 | - | 9 | 10 | 71_91 | 366 | 669 | Transmembrane | Helical |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000331471 | - | 9 | 10 | 179_199 | 366 | 399 | Transmembrane | Helical |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000331471 | - | 9 | 10 | 26_46 | 366 | 399 | Transmembrane | Helical |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000331471 | - | 9 | 10 | 271_291 | 366 | 399 | Transmembrane | Helical |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000331471 | - | 9 | 10 | 71_91 | 366 | 399 | Transmembrane | Helical |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000488961 | - | 5 | 6 | 26_46 | 153 | 456 | Transmembrane | Helical |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000488961 | - | 5 | 6 | 71_91 | 153 | 456 | Transmembrane | Helical |
| Tgene | >PTPRR | chr12:70065208 | chr12:71158558 | ENST00000283228 | - | 1 | 14 | 393_647 | 119 | 658 | Domain | Tyrosine-protein phosphatase |
| Tgene | >PTPRR | chr12:70065208 | chr12:71158558 | ENST00000342084 | - | 0 | 13 | 393_647 | 7 | 546 | Domain | Tyrosine-protein phosphatase |
| Tgene | >PTPRR | chr12:70065208 | chr12:71158558 | ENST00000378778 | - | 0 | 11 | 393_647 | 0 | 452 | Domain | Tyrosine-protein phosphatase |
| Tgene | >PTPRR | chr12:70065208 | chr12:71158558 | ENST00000440835 | - | 0 | 10 | 393_647 | -156 | 413 | Domain | Tyrosine-protein phosphatase |
| Tgene | >PTPRR | chr12:70065208 | chr12:71158558 | ENST00000549308 | - | 0 | 11 | 393_647 | -80 | 413 | Domain | Tyrosine-protein phosphatase |
| Tgene | >PTPRR | chr12:70065208 | chr12:71158558 | ENST00000283228 | - | 1 | 14 | 588_594 | 119 | 658 | Region | Substrate binding |
| Tgene | >PTPRR | chr12:70065208 | chr12:71158558 | ENST00000342084 | - | 0 | 13 | 588_594 | 7 | 546 | Region | Substrate binding |
| Tgene | >PTPRR | chr12:70065208 | chr12:71158558 | ENST00000378778 | - | 0 | 11 | 588_594 | 0 | 452 | Region | Substrate binding |
| Tgene | >PTPRR | chr12:70065208 | chr12:71158558 | ENST00000440835 | - | 0 | 10 | 588_594 | -156 | 413 | Region | Substrate binding |
| Tgene | >PTPRR | chr12:70065208 | chr12:71158558 | ENST00000549308 | - | 0 | 11 | 588_594 | -80 | 413 | Region | Substrate binding |
| Tgene | >PTPRR | chr12:70065208 | chr12:71158558 | ENST00000283228 | - | 1 | 14 | 249_657 | 119 | 658 | Topological domain | Cytoplasmic |
| Tgene | >PTPRR | chr12:70065208 | chr12:71158558 | ENST00000342084 | - | 0 | 13 | 22_227 | 7 | 546 | Topological domain | Extracellular |
| Tgene | >PTPRR | chr12:70065208 | chr12:71158558 | ENST00000342084 | - | 0 | 13 | 249_657 | 7 | 546 | Topological domain | Cytoplasmic |
| Tgene | >PTPRR | chr12:70065208 | chr12:71158558 | ENST00000378778 | - | 0 | 11 | 22_227 | 0 | 452 | Topological domain | Extracellular |
| Tgene | >PTPRR | chr12:70065208 | chr12:71158558 | ENST00000378778 | - | 0 | 11 | 249_657 | 0 | 452 | Topological domain | Cytoplasmic |
| Tgene | >PTPRR | chr12:70065208 | chr12:71158558 | ENST00000440835 | - | 0 | 10 | 22_227 | -156 | 413 | Topological domain | Extracellular |
| Tgene | >PTPRR | chr12:70065208 | chr12:71158558 | ENST00000440835 | - | 0 | 10 | 249_657 | -156 | 413 | Topological domain | Cytoplasmic |
| Tgene | >PTPRR | chr12:70065208 | chr12:71158558 | ENST00000549308 | - | 0 | 11 | 22_227 | -80 | 413 | Topological domain | Extracellular |
| Tgene | >PTPRR | chr12:70065208 | chr12:71158558 | ENST00000549308 | - | 0 | 11 | 249_657 | -80 | 413 | Topological domain | Cytoplasmic |
| Tgene | >PTPRR | chr12:70065208 | chr12:71158558 | ENST00000283228 | - | 1 | 14 | 228_248 | 119 | 658 | Transmembrane | Helical |
| Tgene | >PTPRR | chr12:70065208 | chr12:71158558 | ENST00000342084 | - | 0 | 13 | 228_248 | 7 | 546 | Transmembrane | Helical |
| Tgene | >PTPRR | chr12:70065208 | chr12:71158558 | ENST00000378778 | - | 0 | 11 | 228_248 | 0 | 452 | Transmembrane | Helical |
| Tgene | >PTPRR | chr12:70065208 | chr12:71158558 | ENST00000440835 | - | 0 | 10 | 228_248 | -156 | 413 | Transmembrane | Helical |
| Tgene | >PTPRR | chr12:70065208 | chr12:71158558 | ENST00000549308 | - | 0 | 11 | 228_248 | -80 | 413 | Transmembrane | Helical |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | >BEST3 | chr12:70065208 | chr12:71158558 | ENST00000266661 | - | 1 | 3 | 229_249 | -115 | 73 | Intramembrane | Ontology_term=ECO:0000255 |
| Hgene | >BEST3 | chr12:70065208 | chr12:71158558 | ENST00000393365 | - | 1 | 5 | 229_249 | -164 | 73 | Intramembrane | Ontology_term=ECO:0000255 |
| Hgene | >BEST3 | chr12:70065208 | chr12:71158558 | ENST00000488961 | - | 5 | 6 | 229_249 | 153 | 456 | Intramembrane | Ontology_term=ECO:0000255 |
| Hgene | >BEST3 | chr12:70065208 | chr12:71158558 | ENST00000551160 | - | 1 | 4 | 229_249 | -119 | 73 | Intramembrane | Ontology_term=ECO:0000255 |
| Hgene | >BEST3 | chr12:70065208 | chr12:71158558 | ENST00000266661 | - | 1 | 3 | 1_25 | -115 | 73 | Topological domain | Cytoplasmic |
| Hgene | >BEST3 | chr12:70065208 | chr12:71158558 | ENST00000266661 | - | 1 | 3 | 200_228 | -115 | 73 | Topological domain | Extracellular |
| Hgene | >BEST3 | chr12:70065208 | chr12:71158558 | ENST00000266661 | - | 1 | 3 | 250_270 | -115 | 73 | Topological domain | Extracellular |
| Hgene | >BEST3 | chr12:70065208 | chr12:71158558 | ENST00000266661 | - | 1 | 3 | 292_668 | -115 | 73 | Topological domain | Cytoplasmic |
| Hgene | >BEST3 | chr12:70065208 | chr12:71158558 | ENST00000266661 | - | 1 | 3 | 47_70 | -115 | 73 | Topological domain | Extracellular |
| Hgene | >BEST3 | chr12:70065208 | chr12:71158558 | ENST00000266661 | - | 1 | 3 | 92_178 | -115 | 73 | Topological domain | Cytoplasmic |
| Hgene | >BEST3 | chr12:70065208 | chr12:71158558 | ENST00000330891 | - | 9 | 10 | 292_668 | 366 | 669 | Topological domain | Cytoplasmic |
| Hgene | >BEST3 | chr12:70065208 | chr12:71158558 | ENST00000331471 | - | 9 | 10 | 292_668 | 366 | 399 | Topological domain | Cytoplasmic |
| Hgene | >BEST3 | chr12:70065208 | chr12:71158558 | ENST00000393365 | - | 1 | 5 | 1_25 | -164 | 73 | Topological domain | Cytoplasmic |
| Hgene | >BEST3 | chr12:70065208 | chr12:71158558 | ENST00000393365 | - | 1 | 5 | 200_228 | -164 | 73 | Topological domain | Extracellular |
| Hgene | >BEST3 | chr12:70065208 | chr12:71158558 | ENST00000393365 | - | 1 | 5 | 250_270 | -164 | 73 | Topological domain | Extracellular |
| Hgene | >BEST3 | chr12:70065208 | chr12:71158558 | ENST00000393365 | - | 1 | 5 | 292_668 | -164 | 73 | Topological domain | Cytoplasmic |
| Hgene | >BEST3 | chr12:70065208 | chr12:71158558 | ENST00000393365 | - | 1 | 5 | 47_70 | -164 | 73 | Topological domain | Extracellular |
| Hgene | >BEST3 | chr12:70065208 | chr12:71158558 | ENST00000393365 | - | 1 | 5 | 92_178 | -164 | 73 | Topological domain | Cytoplasmic |
| Hgene | >BEST3 | chr12:70065208 | chr12:71158558 | ENST00000488961 | - | 5 | 6 | 200_228 | 153 | 456 | Topological domain | Extracellular |
| Hgene | >BEST3 | chr12:70065208 | chr12:71158558 | ENST00000488961 | - | 5 | 6 | 250_270 | 153 | 456 | Topological domain | Extracellular |
| Hgene | >BEST3 | chr12:70065208 | chr12:71158558 | ENST00000488961 | - | 5 | 6 | 292_668 | 153 | 456 | Topological domain | Cytoplasmic |
| Hgene | >BEST3 | chr12:70065208 | chr12:71158558 | ENST00000488961 | - | 5 | 6 | 92_178 | 153 | 456 | Topological domain | Cytoplasmic |
| Hgene | >BEST3 | chr12:70065208 | chr12:71158558 | ENST00000551160 | - | 1 | 4 | 1_25 | -119 | 73 | Topological domain | Cytoplasmic |
| Hgene | >BEST3 | chr12:70065208 | chr12:71158558 | ENST00000551160 | - | 1 | 4 | 200_228 | -119 | 73 | Topological domain | Extracellular |
| Hgene | >BEST3 | chr12:70065208 | chr12:71158558 | ENST00000551160 | - | 1 | 4 | 250_270 | -119 | 73 | Topological domain | Extracellular |
| Hgene | >BEST3 | chr12:70065208 | chr12:71158558 | ENST00000551160 | - | 1 | 4 | 292_668 | -119 | 73 | Topological domain | Cytoplasmic |
| Hgene | >BEST3 | chr12:70065208 | chr12:71158558 | ENST00000551160 | - | 1 | 4 | 47_70 | -119 | 73 | Topological domain | Extracellular |
| Hgene | >BEST3 | chr12:70065208 | chr12:71158558 | ENST00000551160 | - | 1 | 4 | 92_178 | -119 | 73 | Topological domain | Cytoplasmic |
| Hgene | >BEST3 | chr12:70065208 | chr12:71158558 | ENST00000266661 | - | 1 | 3 | 179_199 | -115 | 73 | Transmembrane | Helical |
| Hgene | >BEST3 | chr12:70065208 | chr12:71158558 | ENST00000266661 | - | 1 | 3 | 26_46 | -115 | 73 | Transmembrane | Helical |
| Hgene | >BEST3 | chr12:70065208 | chr12:71158558 | ENST00000266661 | - | 1 | 3 | 271_291 | -115 | 73 | Transmembrane | Helical |
| Hgene | >BEST3 | chr12:70065208 | chr12:71158558 | ENST00000266661 | - | 1 | 3 | 71_91 | -115 | 73 | Transmembrane | Helical |
| Hgene | >BEST3 | chr12:70065208 | chr12:71158558 | ENST00000393365 | - | 1 | 5 | 179_199 | -164 | 73 | Transmembrane | Helical |
| Hgene | >BEST3 | chr12:70065208 | chr12:71158558 | ENST00000393365 | - | 1 | 5 | 26_46 | -164 | 73 | Transmembrane | Helical |
| Hgene | >BEST3 | chr12:70065208 | chr12:71158558 | ENST00000393365 | - | 1 | 5 | 271_291 | -164 | 73 | Transmembrane | Helical |
| Hgene | >BEST3 | chr12:70065208 | chr12:71158558 | ENST00000393365 | - | 1 | 5 | 71_91 | -164 | 73 | Transmembrane | Helical |
| Hgene | >BEST3 | chr12:70065208 | chr12:71158558 | ENST00000488961 | - | 5 | 6 | 179_199 | 153 | 456 | Transmembrane | Helical |
| Hgene | >BEST3 | chr12:70065208 | chr12:71158558 | ENST00000488961 | - | 5 | 6 | 271_291 | 153 | 456 | Transmembrane | Helical |
| Hgene | >BEST3 | chr12:70065208 | chr12:71158558 | ENST00000551160 | - | 1 | 4 | 179_199 | -119 | 73 | Transmembrane | Helical |
| Hgene | >BEST3 | chr12:70065208 | chr12:71158558 | ENST00000551160 | - | 1 | 4 | 26_46 | -119 | 73 | Transmembrane | Helical |
| Hgene | >BEST3 | chr12:70065208 | chr12:71158558 | ENST00000551160 | - | 1 | 4 | 271_291 | -119 | 73 | Transmembrane | Helical |
| Hgene | >BEST3 | chr12:70065208 | chr12:71158558 | ENST00000551160 | - | 1 | 4 | 71_91 | -119 | 73 | Transmembrane | Helical |
| Tgene | PTPRR | chr12:70065208 | chr12:71158558 | ENST00000283228 | - | 1 | 14 | 22_227 | 119 | 658 | Topological domain | Extracellular |
Top |
FusionGeneSequence for BEST3_PTPRR |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| >In-frame_BEST3_ENST00000331471_chr12_70065208_-_PTPRR_ENST00000283228_chr12_71158558_-_539aa TLQMDVNKLNITLLRIFRQGVAAALGLLPQQVHINRLIGKKNSIELFVSPINRKTGISDALPSEEVLRSLNINVLHQSLSQFGITEVSPE KNVLQGQHEADKIWSKEGFYAVVIFLSIFVIIVTCLMILYRLKERFQLSLRQDKEKNQEIHLSPITLQPALSEAKTVHSMVQPEQAPKVL NVVVDPQGRGAPEIKATTATSVCPSPFKMKPIGLQERRGSNVSLTLDMSSLGNIEPFVSIPTPREKVAMEYLQSASRILTRSQLRDVVAS SHLLQSEFMEIPMNFVDPKEIDIPRHGTKNRYKTILPNPLSRVCLRPKNVTDSLSTYINANYIRGYSGKEKAFIATQGPMINTVDDFWQM VWQEDSPVIVMITKLKEKNEKCVLYWPEKRGIYGKVEVLVISVNECDNYTIRNLVLKQGSHTQHVKHYWYTSWPDHKTPDSAQPLLQLML >In-frame_BEST3_ENST00000330891_chr12_70065208_-_PTPRR_ENST00000283228_chr12_71158558_-_539aa TLQMDVNKLNITLLRIFRQGVAAALGLLPQQVHINRLIGKKNSIELFVSPINRKTGISDALPSEEVLRSLNINVLHQSLSQFGITEVSPE KNVLQGQHEADKIWSKEGFYAVVIFLSIFVIIVTCLMILYRLKERFQLSLRQDKEKNQEIHLSPITLQPALSEAKTVHSMVQPEQAPKVL NVVVDPQGRGAPEIKATTATSVCPSPFKMKPIGLQERRGSNVSLTLDMSSLGNIEPFVSIPTPREKVAMEYLQSASRILTRSQLRDVVAS SHLLQSEFMEIPMNFVDPKEIDIPRHGTKNRYKTILPNPLSRVCLRPKNVTDSLSTYINANYIRGYSGKEKAFIATQGPMINTVDDFWQM VWQEDSPVIVMITKLKEKNEKCVLYWPEKRGIYGKVEVLVISVNECDNYTIRNLVLKQGSHTQHVKHYWYTSWPDHKTPDSAQPLLQLML >In-frame_BEST3_ENST00000553096_chr12_70065208_-_PTPRR_ENST00000283228_chr12_71158558_-_539aa TLQMDVNKLNITLLRIFRQGVAAALGLLPQQVHINRLIGKKNSIELFVSPINRKTGISDALPSEEVLRSLNINVLHQSLSQFGITEVSPE KNVLQGQHEADKIWSKEGFYAVVIFLSIFVIIVTCLMILYRLKERFQLSLRQDKEKNQEIHLSPITLQPALSEAKTVHSMVQPEQAPKVL NVVVDPQGRGAPEIKATTATSVCPSPFKMKPIGLQERRGSNVSLTLDMSSLGNIEPFVSIPTPREKVAMEYLQSASRILTRSQLRDVVAS SHLLQSEFMEIPMNFVDPKEIDIPRHGTKNRYKTILPNPLSRVCLRPKNVTDSLSTYINANYIRGYSGKEKAFIATQGPMINTVDDFWQM VWQEDSPVIVMITKLKEKNEKCVLYWPEKRGIYGKVEVLVISVNECDNYTIRNLVLKQGSHTQHVKHYWYTSWPDHKTPDSAQPLLQLML >In-frame_BEST3_ENST00000476098_chr12_70065208_-_PTPRR_ENST00000283228_chr12_71158558_-_539aa TLQMDVNKLNITLLRIFRQGVAAALGLLPQQVHINRLIGKKNSIELFVSPINRKTGISDALPSEEVLRSLNINVLHQSLSQFGITEVSPE KNVLQGQHEADKIWSKEGFYAVVIFLSIFVIIVTCLMILYRLKERFQLSLRQDKEKNQEIHLSPITLQPALSEAKTVHSMVQPEQAPKVL NVVVDPQGRGAPEIKATTATSVCPSPFKMKPIGLQERRGSNVSLTLDMSSLGNIEPFVSIPTPREKVAMEYLQSASRILTRSQLRDVVAS SHLLQSEFMEIPMNFVDPKEIDIPRHGTKNRYKTILPNPLSRVCLRPKNVTDSLSTYINANYIRGYSGKEKAFIATQGPMINTVDDFWQM VWQEDSPVIVMITKLKEKNEKCVLYWPEKRGIYGKVEVLVISVNECDNYTIRNLVLKQGSHTQHVKHYWYTSWPDHKTPDSAQPLLQLML |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| >In-frame_BEST3_ENST00000331471_chr12_70065208_-_PTPRR_ENST00000283228_chr12_71158558_-_1617nt ACACTGCAAATGGATGTAAACAAGCTGAACATAACCTTGCTTCGGATCTTCCGCCAAGGAGTGGCTGCAGCTTTAGGACTCTTACCCCAG CAAGTGCACATCAATCGCCTCATTGGAAAGAAGAACAGTATTGAACTGTTTGTGTCTCCCATAAACCGAAAAACAGGAATTTCTGATGCT CTGCCCTCTGAGGAAGTTCTTCGTTCACTTAATATCAATGTTTTGCATCAAAGTTTATCCCAGTTTGGAATTACAGAAGTCTCTCCTGAG AAAAATGTTTTACAAGGGCAGCATGAAGCGGACAAAATCTGGAGCAAAGAAGGATTTTATGCTGTTGTCATTTTTCTCAGCATCTTTGTT ATTATAGTAACGTGTTTGATGATTCTTTACAGATTAAAAGAAAGATTTCAGCTTTCCTTAAGACAAGACAAAGAGAAAAACCAGGAGATC CACCTATCGCCCATCACATTACAGCCAGCACTGTCCGAGGCAAAGACAGTCCACAGCATGGTCCAACCTGAGCAGGCCCCAAAGGTACTG AATGTTGTCGTGGACCCTCAAGGCCGAGGTGCTCCTGAGATCAAAGCTACCACCGCTACCTCTGTTTGCCCTTCTCCTTTCAAAATGAAG CCCATAGGACTTCAAGAGAGAAGAGGGTCCAACGTATCTCTTACATTGGACATGAGTAGCTTGGGGAACATTGAACCCTTTGTGTCTATA CCAACACCACGGGAGAAGGTAGCAATGGAGTATCTGCAGTCAGCCAGCCGAATTCTCACAAGGTCTCAGCTGAGGGACGTCGTGGCAAGT TCACATTTACTCCAAAGTGAATTCATGGAAATACCAATGAACTTTGTGGATCCCAAAGAAATTGATATTCCGCGTCATGGAACTAAAAAT CGCTATAAGACCATTTTACCAAATCCCCTCAGCAGAGTGTGTTTAAGACCAAAAAATGTAACCGATTCATTGAGCACCTACATTAATGCT AATTATATTAGGGGCTACAGTGGCAAGGAGAAAGCCTTCATTGCCACGCAGGGCCCCATGATCAACACCGTGGATGATTTCTGGCAGATG GTTTGGCAGGAAGACAGCCCTGTGATTGTTATGATCACAAAACTCAAAGAAAAAAATGAGAAATGTGTGCTATACTGGCCGGAAAAGAGA GGGATATATGGAAAAGTTGAGGTTCTGGTTATCAGTGTAAATGAATGTGATAACTACACCATTCGAAACCTTGTCTTAAAGCAAGGAAGC CACACCCAACATGTGAAGCATTACTGGTACACCTCATGGCCTGATCACAAGACTCCAGACAGTGCCCAGCCCCTCCTACAGCTCATGCTG GATGTAGAAGAAGACAGACTTGCTTCCCAGGGCCGAGGGCCTGTGGTTGTCCACTGCAGTGCAGGAATAGGTAGAACAGGGTGTTTTATT GCTACATCCATTGGCTGTCAACAGCTGAAAGAAGAAGGAGTTGTGGATGCACTAAGCATTGTCTGCCAGCTTCGTATGGATAGAGGTGGA >In-frame_BEST3_ENST00000330891_chr12_70065208_-_PTPRR_ENST00000283228_chr12_71158558_-_1617nt ACACTGCAAATGGATGTAAACAAGCTGAACATAACCTTGCTTCGGATCTTCCGCCAAGGAGTGGCTGCAGCTTTAGGACTCTTACCCCAG CAAGTGCACATCAATCGCCTCATTGGAAAGAAGAACAGTATTGAACTGTTTGTGTCTCCCATAAACCGAAAAACAGGAATTTCTGATGCT CTGCCCTCTGAGGAAGTTCTTCGTTCACTTAATATCAATGTTTTGCATCAAAGTTTATCCCAGTTTGGAATTACAGAAGTCTCTCCTGAG AAAAATGTTTTACAAGGGCAGCATGAAGCGGACAAAATCTGGAGCAAAGAAGGATTTTATGCTGTTGTCATTTTTCTCAGCATCTTTGTT ATTATAGTAACGTGTTTGATGATTCTTTACAGATTAAAAGAAAGATTTCAGCTTTCCTTAAGACAAGACAAAGAGAAAAACCAGGAGATC CACCTATCGCCCATCACATTACAGCCAGCACTGTCCGAGGCAAAGACAGTCCACAGCATGGTCCAACCTGAGCAGGCCCCAAAGGTACTG AATGTTGTCGTGGACCCTCAAGGCCGAGGTGCTCCTGAGATCAAAGCTACCACCGCTACCTCTGTTTGCCCTTCTCCTTTCAAAATGAAG CCCATAGGACTTCAAGAGAGAAGAGGGTCCAACGTATCTCTTACATTGGACATGAGTAGCTTGGGGAACATTGAACCCTTTGTGTCTATA CCAACACCACGGGAGAAGGTAGCAATGGAGTATCTGCAGTCAGCCAGCCGAATTCTCACAAGGTCTCAGCTGAGGGACGTCGTGGCAAGT TCACATTTACTCCAAAGTGAATTCATGGAAATACCAATGAACTTTGTGGATCCCAAAGAAATTGATATTCCGCGTCATGGAACTAAAAAT CGCTATAAGACCATTTTACCAAATCCCCTCAGCAGAGTGTGTTTAAGACCAAAAAATGTAACCGATTCATTGAGCACCTACATTAATGCT AATTATATTAGGGGCTACAGTGGCAAGGAGAAAGCCTTCATTGCCACGCAGGGCCCCATGATCAACACCGTGGATGATTTCTGGCAGATG GTTTGGCAGGAAGACAGCCCTGTGATTGTTATGATCACAAAACTCAAAGAAAAAAATGAGAAATGTGTGCTATACTGGCCGGAAAAGAGA GGGATATATGGAAAAGTTGAGGTTCTGGTTATCAGTGTAAATGAATGTGATAACTACACCATTCGAAACCTTGTCTTAAAGCAAGGAAGC CACACCCAACATGTGAAGCATTACTGGTACACCTCATGGCCTGATCACAAGACTCCAGACAGTGCCCAGCCCCTCCTACAGCTCATGCTG GATGTAGAAGAAGACAGACTTGCTTCCCAGGGCCGAGGGCCTGTGGTTGTCCACTGCAGTGCAGGAATAGGTAGAACAGGGTGTTTTATT GCTACATCCATTGGCTGTCAACAGCTGAAAGAAGAAGGAGTTGTGGATGCACTAAGCATTGTCTGCCAGCTTCGTATGGATAGAGGTGGA >In-frame_BEST3_ENST00000553096_chr12_70065208_-_PTPRR_ENST00000283228_chr12_71158558_-_1617nt ACACTGCAAATGGATGTAAACAAGCTGAACATAACCTTGCTTCGGATCTTCCGCCAAGGAGTGGCTGCAGCTTTAGGACTCTTACCCCAG CAAGTGCACATCAATCGCCTCATTGGAAAGAAGAACAGTATTGAACTGTTTGTGTCTCCCATAAACCGAAAAACAGGAATTTCTGATGCT CTGCCCTCTGAGGAAGTTCTTCGTTCACTTAATATCAATGTTTTGCATCAAAGTTTATCCCAGTTTGGAATTACAGAAGTCTCTCCTGAG AAAAATGTTTTACAAGGGCAGCATGAAGCGGACAAAATCTGGAGCAAAGAAGGATTTTATGCTGTTGTCATTTTTCTCAGCATCTTTGTT ATTATAGTAACGTGTTTGATGATTCTTTACAGATTAAAAGAAAGATTTCAGCTTTCCTTAAGACAAGACAAAGAGAAAAACCAGGAGATC CACCTATCGCCCATCACATTACAGCCAGCACTGTCCGAGGCAAAGACAGTCCACAGCATGGTCCAACCTGAGCAGGCCCCAAAGGTACTG AATGTTGTCGTGGACCCTCAAGGCCGAGGTGCTCCTGAGATCAAAGCTACCACCGCTACCTCTGTTTGCCCTTCTCCTTTCAAAATGAAG CCCATAGGACTTCAAGAGAGAAGAGGGTCCAACGTATCTCTTACATTGGACATGAGTAGCTTGGGGAACATTGAACCCTTTGTGTCTATA CCAACACCACGGGAGAAGGTAGCAATGGAGTATCTGCAGTCAGCCAGCCGAATTCTCACAAGGTCTCAGCTGAGGGACGTCGTGGCAAGT TCACATTTACTCCAAAGTGAATTCATGGAAATACCAATGAACTTTGTGGATCCCAAAGAAATTGATATTCCGCGTCATGGAACTAAAAAT CGCTATAAGACCATTTTACCAAATCCCCTCAGCAGAGTGTGTTTAAGACCAAAAAATGTAACCGATTCATTGAGCACCTACATTAATGCT AATTATATTAGGGGCTACAGTGGCAAGGAGAAAGCCTTCATTGCCACGCAGGGCCCCATGATCAACACCGTGGATGATTTCTGGCAGATG GTTTGGCAGGAAGACAGCCCTGTGATTGTTATGATCACAAAACTCAAAGAAAAAAATGAGAAATGTGTGCTATACTGGCCGGAAAAGAGA GGGATATATGGAAAAGTTGAGGTTCTGGTTATCAGTGTAAATGAATGTGATAACTACACCATTCGAAACCTTGTCTTAAAGCAAGGAAGC CACACCCAACATGTGAAGCATTACTGGTACACCTCATGGCCTGATCACAAGACTCCAGACAGTGCCCAGCCCCTCCTACAGCTCATGCTG GATGTAGAAGAAGACAGACTTGCTTCCCAGGGCCGAGGGCCTGTGGTTGTCCACTGCAGTGCAGGAATAGGTAGAACAGGGTGTTTTATT GCTACATCCATTGGCTGTCAACAGCTGAAAGAAGAAGGAGTTGTGGATGCACTAAGCATTGTCTGCCAGCTTCGTATGGATAGAGGTGGA >In-frame_BEST3_ENST00000476098_chr12_70065208_-_PTPRR_ENST00000283228_chr12_71158558_-_1617nt ACACTGCAAATGGATGTAAACAAGCTGAACATAACCTTGCTTCGGATCTTCCGCCAAGGAGTGGCTGCAGCTTTAGGACTCTTACCCCAG CAAGTGCACATCAATCGCCTCATTGGAAAGAAGAACAGTATTGAACTGTTTGTGTCTCCCATAAACCGAAAAACAGGAATTTCTGATGCT CTGCCCTCTGAGGAAGTTCTTCGTTCACTTAATATCAATGTTTTGCATCAAAGTTTATCCCAGTTTGGAATTACAGAAGTCTCTCCTGAG AAAAATGTTTTACAAGGGCAGCATGAAGCGGACAAAATCTGGAGCAAAGAAGGATTTTATGCTGTTGTCATTTTTCTCAGCATCTTTGTT ATTATAGTAACGTGTTTGATGATTCTTTACAGATTAAAAGAAAGATTTCAGCTTTCCTTAAGACAAGACAAAGAGAAAAACCAGGAGATC CACCTATCGCCCATCACATTACAGCCAGCACTGTCCGAGGCAAAGACAGTCCACAGCATGGTCCAACCTGAGCAGGCCCCAAAGGTACTG AATGTTGTCGTGGACCCTCAAGGCCGAGGTGCTCCTGAGATCAAAGCTACCACCGCTACCTCTGTTTGCCCTTCTCCTTTCAAAATGAAG CCCATAGGACTTCAAGAGAGAAGAGGGTCCAACGTATCTCTTACATTGGACATGAGTAGCTTGGGGAACATTGAACCCTTTGTGTCTATA CCAACACCACGGGAGAAGGTAGCAATGGAGTATCTGCAGTCAGCCAGCCGAATTCTCACAAGGTCTCAGCTGAGGGACGTCGTGGCAAGT TCACATTTACTCCAAAGTGAATTCATGGAAATACCAATGAACTTTGTGGATCCCAAAGAAATTGATATTCCGCGTCATGGAACTAAAAAT CGCTATAAGACCATTTTACCAAATCCCCTCAGCAGAGTGTGTTTAAGACCAAAAAATGTAACCGATTCATTGAGCACCTACATTAATGCT AATTATATTAGGGGCTACAGTGGCAAGGAGAAAGCCTTCATTGCCACGCAGGGCCCCATGATCAACACCGTGGATGATTTCTGGCAGATG GTTTGGCAGGAAGACAGCCCTGTGATTGTTATGATCACAAAACTCAAAGAAAAAAATGAGAAATGTGTGCTATACTGGCCGGAAAAGAGA GGGATATATGGAAAAGTTGAGGTTCTGGTTATCAGTGTAAATGAATGTGATAACTACACCATTCGAAACCTTGTCTTAAAGCAAGGAAGC CACACCCAACATGTGAAGCATTACTGGTACACCTCATGGCCTGATCACAAGACTCCAGACAGTGCCCAGCCCCTCCTACAGCTCATGCTG GATGTAGAAGAAGACAGACTTGCTTCCCAGGGCCGAGGGCCTGTGGTTGTCCACTGCAGTGCAGGAATAGGTAGAACAGGGTGTTTTATT GCTACATCCATTGGCTGTCAACAGCTGAAAGAAGAAGGAGTTGTGGATGCACTAAGCATTGTCTGCCAGCTTCGTATGGATAGAGGTGGA |
| * Fusion transcript sequences (Full-length transcript). |
| >In-frame_BEST3_ENST00000331471_chr12_70065208_-_PTPRR_ENST00000283228_chr12_71158558_-_3991nt GGGTCCTCTCAGTGGCCAGAGAACAGAAAGAAAATCTGACTGTGCACGAGCGAAGGGTGACACCGGGCGTGCAGCACCGACCTGAAGGCA CCTCTTCGGGGGAGCCCGAAATTTGAAGATTCTCTTTCCTGTCGGAGACTACAAACCAAATAAATAGAAAAAACTATCCAAGATGACTGT CACTTACTCCAGTAAAGTAGCAAATGCAACTTTTTTTGGATTTCATAGGTTACTCCTCAAGTGGAGAGGCAGCATCTACAAACTACTGTA CAGGGAATTTATTGTTTTTGCTGTTCTTTATACAGCAATAAGTTTGGTATACAGATTGTTACTTACAGGAGTCCAAAAACGTTACTTTGA AAAATTATCAATTTACTGTGACAGATATGCTGAACAAATTCCAGTAACCTTTGTGCTTGGGTTTTATGTTACTCTGGTAGTGAACCGATG GTGGAACCAGTTTGTGAATTTGCCCTGGCCAGACAGGCTAATGTTCCTCATCTCTAGCAGTGTTCACGGAAGCGACGAGCACGGGCGCCT GCTTAGAAGGACGCTGATGCGCTACGTCAATCTCACCTCCCTGCTCATCTTTCGCTCGGTGAGCACTGCTGTGTACAAAAGATTTCCCAC AATGGACCACGTGGTTGAAGCAGGTTTTATGACAACAGATGAAAGGAAATTATTCAACCACCTCAAGTCTCCTCATCTGAAATATTGGGT TCCATTCATCTGGTTTGGAAATCTTGCAACTAAAGCCCGGAATGAAGGTAGAATCAGAGACAGTGTTGATCTGCAATCATTGATGACTGA AATGAATCGATACCGCTCTTGGTGCAGCCTCTTATTCGGTTATGACTGGGTTGGGATTCCGCTGGTTTACACCCAGGTTGTCACTCTTGC TGTCTATACCTTCTTCTTTGCGTGCCTGATTGGACGCCAGTTTTTGGATCCCACCAAAGGCTACGCAGGGCATGACTTGGATCTTTACAT TCCCATCTTCACCCTCCTACAATTCTTCTTCTATGCAGGATGGCTTAAGGTAGCAGAGCAGCTTATCAACCCTTTTGGAGAAGATGATGA TGATTTTGAAACTAACTGGTGCATTGACAGAAATTTGCAGGTCTCTCTTTTAGCTGTGGACGAAATGCACATGAGCTTACCCAAGATGAA GAAGGACATTTACTGGGACGATTCTGCTGCTCGCCCACCATACACATTGGCAGCTGCTGACTACTGCATACCCTCATTTCTGGGGTCAAC AGTCCAGATGGGACACTGCAAATGGATGTAAACAAGCTGAACATAACCTTGCTTCGGATCTTCCGCCAAGGAGTGGCTGCAGCTTTAGGA CTCTTACCCCAGCAAGTGCACATCAATCGCCTCATTGGAAAGAAGAACAGTATTGAACTGTTTGTGTCTCCCATAAACCGAAAAACAGGA ATTTCTGATGCTCTGCCCTCTGAGGAAGTTCTTCGTTCACTTAATATCAATGTTTTGCATCAAAGTTTATCCCAGTTTGGAATTACAGAA GTCTCTCCTGAGAAAAATGTTTTACAAGGGCAGCATGAAGCGGACAAAATCTGGAGCAAAGAAGGATTTTATGCTGTTGTCATTTTTCTC AGCATCTTTGTTATTATAGTAACGTGTTTGATGATTCTTTACAGATTAAAAGAAAGATTTCAGCTTTCCTTAAGACAAGACAAAGAGAAA AACCAGGAGATCCACCTATCGCCCATCACATTACAGCCAGCACTGTCCGAGGCAAAGACAGTCCACAGCATGGTCCAACCTGAGCAGGCC CCAAAGGTACTGAATGTTGTCGTGGACCCTCAAGGCCGAGGTGCTCCTGAGATCAAAGCTACCACCGCTACCTCTGTTTGCCCTTCTCCT TTCAAAATGAAGCCCATAGGACTTCAAGAGAGAAGAGGGTCCAACGTATCTCTTACATTGGACATGAGTAGCTTGGGGAACATTGAACCC TTTGTGTCTATACCAACACCACGGGAGAAGGTAGCAATGGAGTATCTGCAGTCAGCCAGCCGAATTCTCACAAGGTCTCAGCTGAGGGAC GTCGTGGCAAGTTCACATTTACTCCAAAGTGAATTCATGGAAATACCAATGAACTTTGTGGATCCCAAAGAAATTGATATTCCGCGTCAT GGAACTAAAAATCGCTATAAGACCATTTTACCAAATCCCCTCAGCAGAGTGTGTTTAAGACCAAAAAATGTAACCGATTCATTGAGCACC TACATTAATGCTAATTATATTAGGGGCTACAGTGGCAAGGAGAAAGCCTTCATTGCCACGCAGGGCCCCATGATCAACACCGTGGATGAT TTCTGGCAGATGGTTTGGCAGGAAGACAGCCCTGTGATTGTTATGATCACAAAACTCAAAGAAAAAAATGAGAAATGTGTGCTATACTGG CCGGAAAAGAGAGGGATATATGGAAAAGTTGAGGTTCTGGTTATCAGTGTAAATGAATGTGATAACTACACCATTCGAAACCTTGTCTTA AAGCAAGGAAGCCACACCCAACATGTGAAGCATTACTGGTACACCTCATGGCCTGATCACAAGACTCCAGACAGTGCCCAGCCCCTCCTA CAGCTCATGCTGGATGTAGAAGAAGACAGACTTGCTTCCCAGGGCCGAGGGCCTGTGGTTGTCCACTGCAGTGCAGGAATAGGTAGAACA GGGTGTTTTATTGCTACATCCATTGGCTGTCAACAGCTGAAAGAAGAAGGAGTTGTGGATGCACTAAGCATTGTCTGCCAGCTTCGTATG GATAGAGGTGGAATGGTGCAAACCAGTGAGCAGTATGAATTTGTGCACCATGCTCTGTGCCTGTATGAGAGCAGACTTTCAGCAGAGACT GTCCAGTGAGTCATTGAAGACTTGTCAGACCATCAATCTCTTGGGGTGATTAATCAAATTACCCACCCAAGGCTTCTAGAAGGAGCTTCC TGCAATGGAAGGAAGGAGAAGCTCTGAAGCCCATGTATGGCATGGATTGTGGAAGACTGGGCAACATATTTAAGATTTCCAGCTCCTTGT GTATATGAATGCATTTGTAAGCATCCCCCAAATTATTCTGAAGGTTTTTTGATGATGGAGGTATGATAGGTTTATCACACAGCCTAAGGC AGATTTTGTTTTGTCTGTACTGACTCTATCTGCCACACAGAATGTATGTATGTAATATTCAGTAATAAATGTCATCAGGTGATGACTGGA TGAGCTGCTGAAGACATTCGTATTATGTGTTAGATGCTTTAATGTTTGCAAAATCTGTCTTGTGAATGGACTGTCAGCTGTTAAACTGTT CCTGTTTTGAAGTGCTATTACCTTTCTCAGTTACCAGAATCTTGCTGCTAAAGTTGCAAGTGATTGATAATGGATTTTTAACAGAGAAGT CTTTGTTTTTGAAAAACAAAAATCAAAAACAGTAACTATTTTATATGGAAATGTGTCTTGATAATATTACCTATTAAATGTGTATTTATA GTCCCTCCTATCAAACAATTACAGAGCACAATGATTGTCATTGGGTATATATGTATTTACTCTCTATTATTGGGCATAAAGGTGGCTTCT GCTCCAGAACTCTATCCACTGTATTTCCACATCGTGAGTCATTTTACTTTAAAAGGGAAAAACAAATTTGTAGCAACTCTGAAGTATCAA GAGTTTTAACTACTTGTCTCTCTTTTGCTAAGAAGGGATTTTTGAATATGCTATCTACCTGGAATCTCTCTCTCAACAAAAGGTATATGC CTTCAGGAATGATATAATCTGTCCCATTTTCGAGGCTCCTTATAAGGACATTTCCATGTATGTCCTTACATTTCTGAAAGCTTTCAATCT TCAAGAGACAAAAAAAATTAAAATAACTACCCTCAGCAAACACTAGCTGTTCTGCTCATATATGAATTTTTAATGCAGCAATGTTGACTT >In-frame_BEST3_ENST00000330891_chr12_70065208_-_PTPRR_ENST00000283228_chr12_71158558_-_4046nt ATAAACAGGCCTCTACAAGTGGAAAAACATTTAACCCCTGTTCTTGTCACACTCTGGGTCCTCTCAGTGGCCAGAGAACAGAAAGAAAAT CTGACTGTGCACGAGCGAAGGGTGACACCGGGCGTGCAGCACCGACCTGAAGGCACCTCTTCGGGGGAGCCCGAAATTTGAAGATTCTCT TTCCTGTCGGAGACTACAAACCAAATAAATAGAAAAAACTATCCAAGATGACTGTCACTTACTCCAGTAAAGTAGCAAATGCAACTTTTT TTGGATTTCATAGGTTACTCCTCAAGTGGAGAGGCAGCATCTACAAACTACTGTACAGGGAATTTATTGTTTTTGCTGTTCTTTATACAG CAATAAGTTTGGTATACAGATTGTTACTTACAGGAGTCCAAAAACGTTACTTTGAAAAATTATCAATTTACTGTGACAGATATGCTGAAC AAATTCCAGTAACCTTTGTGCTTGGGTTTTATGTTACTCTGGTAGTGAACCGATGGTGGAACCAGTTTGTGAATTTGCCCTGGCCAGACA GGCTAATGTTCCTCATCTCTAGCAGTGTTCACGGAAGCGACGAGCACGGGCGCCTGCTTAGAAGGACGCTGATGCGCTACGTCAATCTCA CCTCCCTGCTCATCTTTCGCTCGGTGAGCACTGCTGTGTACAAAAGATTTCCCACAATGGACCACGTGGTTGAAGCAGGTTTTATGACAA CAGATGAAAGGAAATTATTCAACCACCTCAAGTCTCCTCATCTGAAATATTGGGTTCCATTCATCTGGTTTGGAAATCTTGCAACTAAAG CCCGGAATGAAGGTAGAATCAGAGACAGTGTTGATCTGCAATCATTGATGACTGAAATGAATCGATACCGCTCTTGGTGCAGCCTCTTAT TCGGTTATGACTGGGTTGGGATTCCGCTGGTTTACACCCAGGTTGTCACTCTTGCTGTCTATACCTTCTTCTTTGCGTGCCTGATTGGAC GCCAGTTTTTGGATCCCACCAAAGGCTACGCAGGGCATGACTTGGATCTTTACATTCCCATCTTCACCCTCCTACAATTCTTCTTCTATG CAGGATGGCTTAAGGTAGCAGAGCAGCTTATCAACCCTTTTGGAGAAGATGATGATGATTTTGAAACTAACTGGTGCATTGACAGAAATT TGCAGGTCTCTCTTTTAGCTGTGGACGAAATGCACATGAGCTTACCCAAGATGAAGAAGGACATTTACTGGGACGATTCTGCTGCTCGCC CACCATACACATTGGCAGCTGCTGACTACTGCATACCCTCATTTCTGGGGTCAACAGTCCAGATGGGACACTGCAAATGGATGTAAACAA GCTGAACATAACCTTGCTTCGGATCTTCCGCCAAGGAGTGGCTGCAGCTTTAGGACTCTTACCCCAGCAAGTGCACATCAATCGCCTCAT TGGAAAGAAGAACAGTATTGAACTGTTTGTGTCTCCCATAAACCGAAAAACAGGAATTTCTGATGCTCTGCCCTCTGAGGAAGTTCTTCG TTCACTTAATATCAATGTTTTGCATCAAAGTTTATCCCAGTTTGGAATTACAGAAGTCTCTCCTGAGAAAAATGTTTTACAAGGGCAGCA TGAAGCGGACAAAATCTGGAGCAAAGAAGGATTTTATGCTGTTGTCATTTTTCTCAGCATCTTTGTTATTATAGTAACGTGTTTGATGAT TCTTTACAGATTAAAAGAAAGATTTCAGCTTTCCTTAAGACAAGACAAAGAGAAAAACCAGGAGATCCACCTATCGCCCATCACATTACA GCCAGCACTGTCCGAGGCAAAGACAGTCCACAGCATGGTCCAACCTGAGCAGGCCCCAAAGGTACTGAATGTTGTCGTGGACCCTCAAGG CCGAGGTGCTCCTGAGATCAAAGCTACCACCGCTACCTCTGTTTGCCCTTCTCCTTTCAAAATGAAGCCCATAGGACTTCAAGAGAGAAG AGGGTCCAACGTATCTCTTACATTGGACATGAGTAGCTTGGGGAACATTGAACCCTTTGTGTCTATACCAACACCACGGGAGAAGGTAGC AATGGAGTATCTGCAGTCAGCCAGCCGAATTCTCACAAGGTCTCAGCTGAGGGACGTCGTGGCAAGTTCACATTTACTCCAAAGTGAATT CATGGAAATACCAATGAACTTTGTGGATCCCAAAGAAATTGATATTCCGCGTCATGGAACTAAAAATCGCTATAAGACCATTTTACCAAA TCCCCTCAGCAGAGTGTGTTTAAGACCAAAAAATGTAACCGATTCATTGAGCACCTACATTAATGCTAATTATATTAGGGGCTACAGTGG CAAGGAGAAAGCCTTCATTGCCACGCAGGGCCCCATGATCAACACCGTGGATGATTTCTGGCAGATGGTTTGGCAGGAAGACAGCCCTGT GATTGTTATGATCACAAAACTCAAAGAAAAAAATGAGAAATGTGTGCTATACTGGCCGGAAAAGAGAGGGATATATGGAAAAGTTGAGGT TCTGGTTATCAGTGTAAATGAATGTGATAACTACACCATTCGAAACCTTGTCTTAAAGCAAGGAAGCCACACCCAACATGTGAAGCATTA CTGGTACACCTCATGGCCTGATCACAAGACTCCAGACAGTGCCCAGCCCCTCCTACAGCTCATGCTGGATGTAGAAGAAGACAGACTTGC TTCCCAGGGCCGAGGGCCTGTGGTTGTCCACTGCAGTGCAGGAATAGGTAGAACAGGGTGTTTTATTGCTACATCCATTGGCTGTCAACA GCTGAAAGAAGAAGGAGTTGTGGATGCACTAAGCATTGTCTGCCAGCTTCGTATGGATAGAGGTGGAATGGTGCAAACCAGTGAGCAGTA TGAATTTGTGCACCATGCTCTGTGCCTGTATGAGAGCAGACTTTCAGCAGAGACTGTCCAGTGAGTCATTGAAGACTTGTCAGACCATCA ATCTCTTGGGGTGATTAATCAAATTACCCACCCAAGGCTTCTAGAAGGAGCTTCCTGCAATGGAAGGAAGGAGAAGCTCTGAAGCCCATG TATGGCATGGATTGTGGAAGACTGGGCAACATATTTAAGATTTCCAGCTCCTTGTGTATATGAATGCATTTGTAAGCATCCCCCAAATTA TTCTGAAGGTTTTTTGATGATGGAGGTATGATAGGTTTATCACACAGCCTAAGGCAGATTTTGTTTTGTCTGTACTGACTCTATCTGCCA CACAGAATGTATGTATGTAATATTCAGTAATAAATGTCATCAGGTGATGACTGGATGAGCTGCTGAAGACATTCGTATTATGTGTTAGAT GCTTTAATGTTTGCAAAATCTGTCTTGTGAATGGACTGTCAGCTGTTAAACTGTTCCTGTTTTGAAGTGCTATTACCTTTCTCAGTTACC AGAATCTTGCTGCTAAAGTTGCAAGTGATTGATAATGGATTTTTAACAGAGAAGTCTTTGTTTTTGAAAAACAAAAATCAAAAACAGTAA CTATTTTATATGGAAATGTGTCTTGATAATATTACCTATTAAATGTGTATTTATAGTCCCTCCTATCAAACAATTACAGAGCACAATGAT TGTCATTGGGTATATATGTATTTACTCTCTATTATTGGGCATAAAGGTGGCTTCTGCTCCAGAACTCTATCCACTGTATTTCCACATCGT GAGTCATTTTACTTTAAAAGGGAAAAACAAATTTGTAGCAACTCTGAAGTATCAAGAGTTTTAACTACTTGTCTCTCTTTTGCTAAGAAG GGATTTTTGAATATGCTATCTACCTGGAATCTCTCTCTCAACAAAAGGTATATGCCTTCAGGAATGATATAATCTGTCCCATTTTCGAGG CTCCTTATAAGGACATTTCCATGTATGTCCTTACATTTCTGAAAGCTTTCAATCTTCAAGAGACAAAAAAAATTAAAATAACTACCCTCA >In-frame_BEST3_ENST00000553096_chr12_70065208_-_PTPRR_ENST00000283228_chr12_71158558_-_3653nt CCGACCTGAAGGCACCTCTTCGGGGGAGCCCGAAATTTGAAGATTCTCTTTCCTGTCGGAGACTACAAACCAAATAAATAGGGTTTTATG TTACTCTGGTAGTGAACCGATGGTGGAACCAGTTTGTGAATTTGCCCTGGCCAGACAGGCTAATGTTCCTCATCTCTAGCAGTGTTCACG GAAGCGACGAGCACGGGCGCCTGCTTAGAAGGACGCTGATGCGCTACGTCAATCTCACCTCCCTGCTCATCTTTCGCTCGGTGAGCACTG CTGTGTACAAAAGATTTCCCACAATGGACCACGTGGTTGAAGCAGGTTTTATGACAACAGATGAAAGGAAATTATTCAACCACCTCAAGT CTCCTCATCTGAAATATTGGGTTCCATTCATCTGGTTTGGAAATCTTGCAACTAAAGCCCGGAATGAAGGTAGAATCAGAGACAGTGTTG ATCTGCAATCATTGATGACTGAAATGAATCGATACCGCTCTTGGTGCAGCCTCTTATTCGGTTATGACTGGGTTGGGATTCCGCTGGTTT ACACCCAGGTTGTCACTCTTGCTGTCTATACCTTCTTCTTTGCGTGCCTGATTGGACGCCAGTTTTTGGATCCCACCAAAGGCTACGCAG GGCATGACTTGGATCTTTACATTCCCATCTTCACCCTCCTACAATTCTTCTTCTATGCAGGATGGCTTAAGGTAGCAGAGCAGCTTATCA ACCCTTTTGGAGAAGATGATGATGATTTTGAAACTAACTGGTGCATTGACAGAAATTTGCAGGTCTCTCTTTTAGCTGTGGACGAAATGC ACATGAGCTTACCCAAGATGAAGAAGGACATTTACTGGGACGATTCTGCTGCTCGCCCACCATACACATTGGCAGCTGCTGACTACTGCA TACCCTCATTTCTGGGGTCAACAGTCCAGATGGGACACTGCAAATGGATGTAAACAAGCTGAACATAACCTTGCTTCGGATCTTCCGCCA AGGAGTGGCTGCAGCTTTAGGACTCTTACCCCAGCAAGTGCACATCAATCGCCTCATTGGAAAGAAGAACAGTATTGAACTGTTTGTGTC TCCCATAAACCGAAAAACAGGAATTTCTGATGCTCTGCCCTCTGAGGAAGTTCTTCGTTCACTTAATATCAATGTTTTGCATCAAAGTTT ATCCCAGTTTGGAATTACAGAAGTCTCTCCTGAGAAAAATGTTTTACAAGGGCAGCATGAAGCGGACAAAATCTGGAGCAAAGAAGGATT TTATGCTGTTGTCATTTTTCTCAGCATCTTTGTTATTATAGTAACGTGTTTGATGATTCTTTACAGATTAAAAGAAAGATTTCAGCTTTC CTTAAGACAAGACAAAGAGAAAAACCAGGAGATCCACCTATCGCCCATCACATTACAGCCAGCACTGTCCGAGGCAAAGACAGTCCACAG CATGGTCCAACCTGAGCAGGCCCCAAAGGTACTGAATGTTGTCGTGGACCCTCAAGGCCGAGGTGCTCCTGAGATCAAAGCTACCACCGC TACCTCTGTTTGCCCTTCTCCTTTCAAAATGAAGCCCATAGGACTTCAAGAGAGAAGAGGGTCCAACGTATCTCTTACATTGGACATGAG TAGCTTGGGGAACATTGAACCCTTTGTGTCTATACCAACACCACGGGAGAAGGTAGCAATGGAGTATCTGCAGTCAGCCAGCCGAATTCT CACAAGGTCTCAGCTGAGGGACGTCGTGGCAAGTTCACATTTACTCCAAAGTGAATTCATGGAAATACCAATGAACTTTGTGGATCCCAA AGAAATTGATATTCCGCGTCATGGAACTAAAAATCGCTATAAGACCATTTTACCAAATCCCCTCAGCAGAGTGTGTTTAAGACCAAAAAA TGTAACCGATTCATTGAGCACCTACATTAATGCTAATTATATTAGGGGCTACAGTGGCAAGGAGAAAGCCTTCATTGCCACGCAGGGCCC CATGATCAACACCGTGGATGATTTCTGGCAGATGGTTTGGCAGGAAGACAGCCCTGTGATTGTTATGATCACAAAACTCAAAGAAAAAAA TGAGAAATGTGTGCTATACTGGCCGGAAAAGAGAGGGATATATGGAAAAGTTGAGGTTCTGGTTATCAGTGTAAATGAATGTGATAACTA CACCATTCGAAACCTTGTCTTAAAGCAAGGAAGCCACACCCAACATGTGAAGCATTACTGGTACACCTCATGGCCTGATCACAAGACTCC AGACAGTGCCCAGCCCCTCCTACAGCTCATGCTGGATGTAGAAGAAGACAGACTTGCTTCCCAGGGCCGAGGGCCTGTGGTTGTCCACTG CAGTGCAGGAATAGGTAGAACAGGGTGTTTTATTGCTACATCCATTGGCTGTCAACAGCTGAAAGAAGAAGGAGTTGTGGATGCACTAAG CATTGTCTGCCAGCTTCGTATGGATAGAGGTGGAATGGTGCAAACCAGTGAGCAGTATGAATTTGTGCACCATGCTCTGTGCCTGTATGA GAGCAGACTTTCAGCAGAGACTGTCCAGTGAGTCATTGAAGACTTGTCAGACCATCAATCTCTTGGGGTGATTAATCAAATTACCCACCC AAGGCTTCTAGAAGGAGCTTCCTGCAATGGAAGGAAGGAGAAGCTCTGAAGCCCATGTATGGCATGGATTGTGGAAGACTGGGCAACATA TTTAAGATTTCCAGCTCCTTGTGTATATGAATGCATTTGTAAGCATCCCCCAAATTATTCTGAAGGTTTTTTGATGATGGAGGTATGATA GGTTTATCACACAGCCTAAGGCAGATTTTGTTTTGTCTGTACTGACTCTATCTGCCACACAGAATGTATGTATGTAATATTCAGTAATAA ATGTCATCAGGTGATGACTGGATGAGCTGCTGAAGACATTCGTATTATGTGTTAGATGCTTTAATGTTTGCAAAATCTGTCTTGTGAATG GACTGTCAGCTGTTAAACTGTTCCTGTTTTGAAGTGCTATTACCTTTCTCAGTTACCAGAATCTTGCTGCTAAAGTTGCAAGTGATTGAT AATGGATTTTTAACAGAGAAGTCTTTGTTTTTGAAAAACAAAAATCAAAAACAGTAACTATTTTATATGGAAATGTGTCTTGATAATATT ACCTATTAAATGTGTATTTATAGTCCCTCCTATCAAACAATTACAGAGCACAATGATTGTCATTGGGTATATATGTATTTACTCTCTATT ATTGGGCATAAAGGTGGCTTCTGCTCCAGAACTCTATCCACTGTATTTCCACATCGTGAGTCATTTTACTTTAAAAGGGAAAAACAAATT TGTAGCAACTCTGAAGTATCAAGAGTTTTAACTACTTGTCTCTCTTTTGCTAAGAAGGGATTTTTGAATATGCTATCTACCTGGAATCTC TCTCTCAACAAAAGGTATATGCCTTCAGGAATGATATAATCTGTCCCATTTTCGAGGCTCCTTATAAGGACATTTCCATGTATGTCCTTA CATTTCTGAAAGCTTTCAATCTTCAAGAGACAAAAAAAATTAAAATAACTACCCTCAGCAAACACTAGCTGTTCTGCTCATATATGAATT >In-frame_BEST3_ENST00000476098_chr12_70065208_-_PTPRR_ENST00000283228_chr12_71158558_-_3511nt AGTGGCCAGAGAACAGAAAGAAAATCTGACTGTGCACGAGCGAAGGGTGACACCGGGCGTGCAGCACCGACCTGAAGGCACCTCTTCGGG GGAGCCCGAAATTTGAAGATTCTCTTTCCTGTCGGAGACTACAAACCAAATAAATAGGGTTTTATGTTACTCTGGTAGTGAACCGATGGT GGAACCAGTTTGTGAATTTGCCCTGGCCAGACAGGCTAATGTTCCTCATCTCTAGCAGTGTTCACGGAAGCGACGAGCACGGGCGCCTGC TTAGAAGGACGCTGATGCGCTACGTCAATCTCACCTCCCTGCTCATCTTTCGCTCGGTTTTATGACAACAGATGAAAGGAAATTATTCAA CCACCTCAAGTCTCCTCATCTGAAATATTGGGTTCCATTCATCTGGTTTGGAAATCTTGCAACTAAAGCCCGGAATGAAGGTAGAATCAG AGACAGTGTTGATCTGCAATCATTGATGACTGAAATGAATCGATACCGCTCTTGGTGCAGCCTCTTATTCGGTTATGACTGGGTTGGGAT TCCGCTGGTTTACACCCAGGTAGCAGAGCAGCTTATCAACCCTTTTGGAGAAGATGATGATGATTTTGAAACTAACTGGTGCATTGACAG AAATTTGCAGGTCTCTCTTTTAGCTGTGGACGAAATGCACATGAGCTTACCCAAGATGAAGAAGGACATTTACTGGGACGATTCTGCTGC TCGCCCACCATACACATTGGCAGCTGCTGACTACTGCATACCCTCATTTCTGGGGTCAACAGTCCAGATGGGACACTGCAAATGGATGTA AACAAGCTGAACATAACCTTGCTTCGGATCTTCCGCCAAGGAGTGGCTGCAGCTTTAGGACTCTTACCCCAGCAAGTGCACATCAATCGC CTCATTGGAAAGAAGAACAGTATTGAACTGTTTGTGTCTCCCATAAACCGAAAAACAGGAATTTCTGATGCTCTGCCCTCTGAGGAAGTT CTTCGTTCACTTAATATCAATGTTTTGCATCAAAGTTTATCCCAGTTTGGAATTACAGAAGTCTCTCCTGAGAAAAATGTTTTACAAGGG CAGCATGAAGCGGACAAAATCTGGAGCAAAGAAGGATTTTATGCTGTTGTCATTTTTCTCAGCATCTTTGTTATTATAGTAACGTGTTTG ATGATTCTTTACAGATTAAAAGAAAGATTTCAGCTTTCCTTAAGACAAGACAAAGAGAAAAACCAGGAGATCCACCTATCGCCCATCACA TTACAGCCAGCACTGTCCGAGGCAAAGACAGTCCACAGCATGGTCCAACCTGAGCAGGCCCCAAAGGTACTGAATGTTGTCGTGGACCCT CAAGGCCGAGGTGCTCCTGAGATCAAAGCTACCACCGCTACCTCTGTTTGCCCTTCTCCTTTCAAAATGAAGCCCATAGGACTTCAAGAG AGAAGAGGGTCCAACGTATCTCTTACATTGGACATGAGTAGCTTGGGGAACATTGAACCCTTTGTGTCTATACCAACACCACGGGAGAAG GTAGCAATGGAGTATCTGCAGTCAGCCAGCCGAATTCTCACAAGGTCTCAGCTGAGGGACGTCGTGGCAAGTTCACATTTACTCCAAAGT GAATTCATGGAAATACCAATGAACTTTGTGGATCCCAAAGAAATTGATATTCCGCGTCATGGAACTAAAAATCGCTATAAGACCATTTTA CCAAATCCCCTCAGCAGAGTGTGTTTAAGACCAAAAAATGTAACCGATTCATTGAGCACCTACATTAATGCTAATTATATTAGGGGCTAC AGTGGCAAGGAGAAAGCCTTCATTGCCACGCAGGGCCCCATGATCAACACCGTGGATGATTTCTGGCAGATGGTTTGGCAGGAAGACAGC CCTGTGATTGTTATGATCACAAAACTCAAAGAAAAAAATGAGAAATGTGTGCTATACTGGCCGGAAAAGAGAGGGATATATGGAAAAGTT GAGGTTCTGGTTATCAGTGTAAATGAATGTGATAACTACACCATTCGAAACCTTGTCTTAAAGCAAGGAAGCCACACCCAACATGTGAAG CATTACTGGTACACCTCATGGCCTGATCACAAGACTCCAGACAGTGCCCAGCCCCTCCTACAGCTCATGCTGGATGTAGAAGAAGACAGA CTTGCTTCCCAGGGCCGAGGGCCTGTGGTTGTCCACTGCAGTGCAGGAATAGGTAGAACAGGGTGTTTTATTGCTACATCCATTGGCTGT CAACAGCTGAAAGAAGAAGGAGTTGTGGATGCACTAAGCATTGTCTGCCAGCTTCGTATGGATAGAGGTGGAATGGTGCAAACCAGTGAG CAGTATGAATTTGTGCACCATGCTCTGTGCCTGTATGAGAGCAGACTTTCAGCAGAGACTGTCCAGTGAGTCATTGAAGACTTGTCAGAC CATCAATCTCTTGGGGTGATTAATCAAATTACCCACCCAAGGCTTCTAGAAGGAGCTTCCTGCAATGGAAGGAAGGAGAAGCTCTGAAGC CCATGTATGGCATGGATTGTGGAAGACTGGGCAACATATTTAAGATTTCCAGCTCCTTGTGTATATGAATGCATTTGTAAGCATCCCCCA AATTATTCTGAAGGTTTTTTGATGATGGAGGTATGATAGGTTTATCACACAGCCTAAGGCAGATTTTGTTTTGTCTGTACTGACTCTATC TGCCACACAGAATGTATGTATGTAATATTCAGTAATAAATGTCATCAGGTGATGACTGGATGAGCTGCTGAAGACATTCGTATTATGTGT TAGATGCTTTAATGTTTGCAAAATCTGTCTTGTGAATGGACTGTCAGCTGTTAAACTGTTCCTGTTTTGAAGTGCTATTACCTTTCTCAG TTACCAGAATCTTGCTGCTAAAGTTGCAAGTGATTGATAATGGATTTTTAACAGAGAAGTCTTTGTTTTTGAAAAACAAAAATCAAAAAC AGTAACTATTTTATATGGAAATGTGTCTTGATAATATTACCTATTAAATGTGTATTTATAGTCCCTCCTATCAAACAATTACAGAGCACA ATGATTGTCATTGGGTATATATGTATTTACTCTCTATTATTGGGCATAAAGGTGGCTTCTGCTCCAGAACTCTATCCACTGTATTTCCAC ATCGTGAGTCATTTTACTTTAAAAGGGAAAAACAAATTTGTAGCAACTCTGAAGTATCAAGAGTTTTAACTACTTGTCTCTCTTTTGCTA AGAAGGGATTTTTGAATATGCTATCTACCTGGAATCTCTCTCTCAACAAAAGGTATATGCCTTCAGGAATGATATAATCTGTCCCATTTT CGAGGCTCCTTATAAGGACATTTCCATGTATGTCCTTACATTTCTGAAAGCTTTCAATCTTCAAGAGACAAAAAAAATTAAAATAACTAC CCTCAGCAAACACTAGCTGTTCTGCTCATATATGAATTTTTAATGCAGCAATGTTGACTTTGTTTCATACTGCCAATAAACTCTTAATAC |
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FusionGenePPI for BEST3_PTPRR |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| BEST3 | PTPRR | MAPK1, MAPK3, MAPK7, MAPK14, NTRK1, CEP290, EGFR, ERBB2, IGF1R, RET, MST1R, ERBB4, FGFR2, FGFR4, KDR, TEK, INSR, ALDH18A1, DHPS, PNMA2, TRIM11, KIAA0196, TBC1D5, DNAJC13, SNX6, PTPRR, MAPK1IP1L, MAPKAPK3, MAD2L1BP, CBS, MAPK11, CCT8L1P, HSPA4L, LMTK2, AATK, ERBB3, RYK, ROR1, ROR2, PTK7, EPHA2 |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for BEST3_PTPRR |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for BEST3_PTPRR |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Tgene | PTPRR | C0041696 | Unipolar Depression | 1 | PSYGENET |
| Tgene | PTPRR | C1269683 | Major Depressive Disorder | 1 | PSYGENET |
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