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Fusion gene ID: 41123 |
FusionGeneSummary for USP3_MYO1D |
Fusion gene summary |
Fusion gene information | Fusion gene name: USP3_MYO1D | Fusion gene ID: 41123 | Hgene | Tgene | Gene symbol | USP3 | MYO1D | Gene ID | 9960 | 4642 |
Gene name | ubiquitin specific peptidase 3 | myosin ID | |
Synonyms | SIH003|UBP | PPP1R108|myr4 | |
Cytomap | 15q22.31 | 17q11.2 | |
Type of gene | protein-coding | protein-coding | |
Description | ubiquitin carboxyl-terminal hydrolase 3deubiquitinating enzyme 3ubiquitin thioesterase 3ubiquitin thiolesterase 3ubiquitin-specific-processing protease 3 | unconventional myosin-Idmyosin-I gammaprotein phosphatase 1, regulatory subunit 108 | |
Modification date | 20180523 | 20180519 | |
UniProtAcc | Q9Y6I4 | O94832 | |
Ensembl transtripts involved in fusion gene | ENST00000540797, ENST00000380324, ENST00000268049, ENST00000536001, ENST00000539772, ENST00000558285, ENST00000559711, ENST00000558218, | ENST00000318217, ENST00000394649, ENST00000579584, ENST00000584232, ENST00000583621, | |
Fusion gene scores | * DoF score | 5 X 5 X 4=100 | 15 X 9 X 8=1080 |
# samples | 6 | 15 | |
** MAII score | log2(6/100*10)=-0.736965594166206 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(15/1080*10)=-2.84799690655495 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: USP3 [Title/Abstract] AND MYO1D [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | USP3 | GO:0016578 | histone deubiquitination | 17980597 |
Hgene | USP3 | GO:0031647 | regulation of protein stability | 17980597 |
Tgene | MYO1D | GO:0010923 | negative regulation of phosphatase activity | 19389623 |
Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | STAD | TCGA-HF-7131-01A | USP3 | chr15 | 63829355 | + | MYO1D | chr17 | 30821933 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-3CDS | ENST00000540797 | ENST00000318217 | USP3 | chr15 | 63829355 | + | MYO1D | chr17 | 30821933 | - |
intron-3CDS | ENST00000540797 | ENST00000394649 | USP3 | chr15 | 63829355 | + | MYO1D | chr17 | 30821933 | - |
intron-intron | ENST00000540797 | ENST00000579584 | USP3 | chr15 | 63829355 | + | MYO1D | chr17 | 30821933 | - |
intron-intron | ENST00000540797 | ENST00000584232 | USP3 | chr15 | 63829355 | + | MYO1D | chr17 | 30821933 | - |
intron-intron | ENST00000540797 | ENST00000583621 | USP3 | chr15 | 63829355 | + | MYO1D | chr17 | 30821933 | - |
Frame-shift | ENST00000380324 | ENST00000318217 | USP3 | chr15 | 63829355 | + | MYO1D | chr17 | 30821933 | - |
Frame-shift | ENST00000380324 | ENST00000394649 | USP3 | chr15 | 63829355 | + | MYO1D | chr17 | 30821933 | - |
5CDS-intron | ENST00000380324 | ENST00000579584 | USP3 | chr15 | 63829355 | + | MYO1D | chr17 | 30821933 | - |
5CDS-intron | ENST00000380324 | ENST00000584232 | USP3 | chr15 | 63829355 | + | MYO1D | chr17 | 30821933 | - |
5CDS-intron | ENST00000380324 | ENST00000583621 | USP3 | chr15 | 63829355 | + | MYO1D | chr17 | 30821933 | - |
Frame-shift | ENST00000268049 | ENST00000318217 | USP3 | chr15 | 63829355 | + | MYO1D | chr17 | 30821933 | - |
Frame-shift | ENST00000268049 | ENST00000394649 | USP3 | chr15 | 63829355 | + | MYO1D | chr17 | 30821933 | - |
5CDS-intron | ENST00000268049 | ENST00000579584 | USP3 | chr15 | 63829355 | + | MYO1D | chr17 | 30821933 | - |
5CDS-intron | ENST00000268049 | ENST00000584232 | USP3 | chr15 | 63829355 | + | MYO1D | chr17 | 30821933 | - |
5CDS-intron | ENST00000268049 | ENST00000583621 | USP3 | chr15 | 63829355 | + | MYO1D | chr17 | 30821933 | - |
Frame-shift | ENST00000536001 | ENST00000318217 | USP3 | chr15 | 63829355 | + | MYO1D | chr17 | 30821933 | - |
Frame-shift | ENST00000536001 | ENST00000394649 | USP3 | chr15 | 63829355 | + | MYO1D | chr17 | 30821933 | - |
5CDS-intron | ENST00000536001 | ENST00000579584 | USP3 | chr15 | 63829355 | + | MYO1D | chr17 | 30821933 | - |
5CDS-intron | ENST00000536001 | ENST00000584232 | USP3 | chr15 | 63829355 | + | MYO1D | chr17 | 30821933 | - |
5CDS-intron | ENST00000536001 | ENST00000583621 | USP3 | chr15 | 63829355 | + | MYO1D | chr17 | 30821933 | - |
intron-3CDS | ENST00000539772 | ENST00000318217 | USP3 | chr15 | 63829355 | + | MYO1D | chr17 | 30821933 | - |
intron-3CDS | ENST00000539772 | ENST00000394649 | USP3 | chr15 | 63829355 | + | MYO1D | chr17 | 30821933 | - |
intron-intron | ENST00000539772 | ENST00000579584 | USP3 | chr15 | 63829355 | + | MYO1D | chr17 | 30821933 | - |
intron-intron | ENST00000539772 | ENST00000584232 | USP3 | chr15 | 63829355 | + | MYO1D | chr17 | 30821933 | - |
intron-intron | ENST00000539772 | ENST00000583621 | USP3 | chr15 | 63829355 | + | MYO1D | chr17 | 30821933 | - |
Frame-shift | ENST00000558285 | ENST00000318217 | USP3 | chr15 | 63829355 | + | MYO1D | chr17 | 30821933 | - |
Frame-shift | ENST00000558285 | ENST00000394649 | USP3 | chr15 | 63829355 | + | MYO1D | chr17 | 30821933 | - |
5CDS-intron | ENST00000558285 | ENST00000579584 | USP3 | chr15 | 63829355 | + | MYO1D | chr17 | 30821933 | - |
5CDS-intron | ENST00000558285 | ENST00000584232 | USP3 | chr15 | 63829355 | + | MYO1D | chr17 | 30821933 | - |
5CDS-intron | ENST00000558285 | ENST00000583621 | USP3 | chr15 | 63829355 | + | MYO1D | chr17 | 30821933 | - |
intron-3CDS | ENST00000559711 | ENST00000318217 | USP3 | chr15 | 63829355 | + | MYO1D | chr17 | 30821933 | - |
intron-3CDS | ENST00000559711 | ENST00000394649 | USP3 | chr15 | 63829355 | + | MYO1D | chr17 | 30821933 | - |
intron-intron | ENST00000559711 | ENST00000579584 | USP3 | chr15 | 63829355 | + | MYO1D | chr17 | 30821933 | - |
intron-intron | ENST00000559711 | ENST00000584232 | USP3 | chr15 | 63829355 | + | MYO1D | chr17 | 30821933 | - |
intron-intron | ENST00000559711 | ENST00000583621 | USP3 | chr15 | 63829355 | + | MYO1D | chr17 | 30821933 | - |
intron-3CDS | ENST00000558218 | ENST00000318217 | USP3 | chr15 | 63829355 | + | MYO1D | chr17 | 30821933 | - |
intron-3CDS | ENST00000558218 | ENST00000394649 | USP3 | chr15 | 63829355 | + | MYO1D | chr17 | 30821933 | - |
intron-intron | ENST00000558218 | ENST00000579584 | USP3 | chr15 | 63829355 | + | MYO1D | chr17 | 30821933 | - |
intron-intron | ENST00000558218 | ENST00000584232 | USP3 | chr15 | 63829355 | + | MYO1D | chr17 | 30821933 | - |
intron-intron | ENST00000558218 | ENST00000583621 | USP3 | chr15 | 63829355 | + | MYO1D | chr17 | 30821933 | - |
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FusionProtFeatures for USP3_MYO1D |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
USP3 | MYO1D |
Hydrolase that deubiquitinates monoubiquitinated targetproteins such as histone H2A and H2B. Required for properprogression through S phase and subsequent mitotic entry. Mayregulate the DNA damage response (DDR) checkpoint throughdeubiquitination of H2A at DNA damage sites. Associates with thechromatin. {ECO:0000269|PubMed:17980597}. | Myosins are actin-based motor molecules with ATPaseactivity. Unconventional myosins serve in intracellular movements.Their highly divergent tails are presumed to bind to membranouscompartments, which would be moved relative to actin filaments (Bysimilarity). {ECO:0000250}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for USP3_MYO1D |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for USP3_MYO1D |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
USP3 | UBC, CBR3, EIF4G1, GNAL, LRP1, PKLR, EIF3A, EIF3B, EIF3C, EIF3D, EIF3F, EIF3G, EIF3H, EIF3I, GNA13, WDTC1, RIMBP2, NXN, PRRC2B, TOR1AIP2, ELAVL1, TXNDC17, TXLNG, ZFAND6, SH3BGRL3, ATP6V1H, DDX58, IFIH1, HIST1H2AB, HIST1H2BB, ISLR, RSU1, DHX15, HIST1H3A, TMEM173, GPC1, NT5E, PDZK1 | MYO1D | ILK, PELO, SIRT7, FBXO25, CUL1, LRRK2, UBASH3B, SHC1, ATP6V1B1, ECT2, MDC1, PAXIP1, PAN2, CCDC8, EGFR, DAPK1, PEX19, VSIG4, UBB, TBC1D9B, PTEN, ZNF746, SSH1, SSH2, PSMC4, DKK3, FBXO40, TOR1AIP2, BTD, HAVCR2, EID1, NEXN, SCN3B, SSSCA1, CDH5, DNAI2, PPP6R2, LSP1, BBS7, COX15, DLST, PDHA1 |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for USP3_MYO1D |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for USP3_MYO1D |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | MYO1D | C0004352 | Autistic Disorder | 1 | CTD_human |