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Fusion gene ID: 40519 |
FusionGeneSummary for UBE3C_BAG1 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: UBE3C_BAG1 | Fusion gene ID: 40519 | Hgene | Tgene | Gene symbol | UBE3C | BAG1 | Gene ID | 9690 | 573 |
| Gene name | ubiquitin protein ligase E3C | BCL2 associated athanogene 1 | |
| Synonyms | HECTH2 | BAG-1|HAP|RAP46 | |
| Cytomap | 7q36.3 | 9p13.3 | |
| Type of gene | protein-coding | protein-coding | |
| Description | ubiquitin-protein ligase E3CHECT-type ubiquitin transferase E3Cubiquitin-protein isopeptide ligase (E3) | BAG family molecular chaperone regulator 1BCL2-associated athanogeneBcl-2 associating athanogene-1 proteinBcl-2-binding proteinglucocortoid receptor-associated protein RAP46receptor-associated protein, 46-KD | |
| Modification date | 20180523 | 20180527 | |
| UniProtAcc | Q15386 | Q99933 | |
| Ensembl transtripts involved in fusion gene | ENST00000348165, ENST00000389103, | ENST00000472232, ENST00000467389, ENST00000379704, | |
| Fusion gene scores | * DoF score | 10 X 11 X 8=880 | 4 X 4 X 5=80 |
| # samples | 14 | 8 | |
| ** MAII score | log2(14/880*10)=-2.65207669657969 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(8/80*10)=0 | |
| Context | PubMed: UBE3C [Title/Abstract] AND BAG1 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | UBE3C | GO:0000209 | protein polyubiquitination | 11278995 |
| Tgene | BAG1 | GO:0051085 | chaperone cofactor-dependent protein refolding | 12853476 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChiTaRS3.1 | BE884609 | UBE3C | chr7 | 156968887 | + | BAG1 | chr9 | 33253909 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| intron-3UTR | ENST00000348165 | ENST00000472232 | UBE3C | chr7 | 156968887 | + | BAG1 | chr9 | 33253909 | - |
| intron-intron | ENST00000348165 | ENST00000467389 | UBE3C | chr7 | 156968887 | + | BAG1 | chr9 | 33253909 | - |
| intron-intron | ENST00000348165 | ENST00000379704 | UBE3C | chr7 | 156968887 | + | BAG1 | chr9 | 33253909 | - |
| intron-3UTR | ENST00000389103 | ENST00000472232 | UBE3C | chr7 | 156968887 | + | BAG1 | chr9 | 33253909 | - |
| intron-intron | ENST00000389103 | ENST00000467389 | UBE3C | chr7 | 156968887 | + | BAG1 | chr9 | 33253909 | - |
| intron-intron | ENST00000389103 | ENST00000379704 | UBE3C | chr7 | 156968887 | + | BAG1 | chr9 | 33253909 | - |
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FusionProtFeatures for UBE3C_BAG1 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| UBE3C | BAG1 |
| E3 ubiquitin-protein ligase that accepts ubiquitin fromthe E2 ubiquitin-conjugating enzyme UBE2D1 in the form of athioester and then directly transfers the ubiquitin to targetedsubstrates. Can assemble unanchored poly-ubiquitin chains ineither 'Lys-29'- or 'Lys-48'-linked polyubiquitin chains. Haspreference for 'Lys-48' linkages. It can target itself forubiquitination in vitro and may promote its own degradation invivo. {ECO:0000269|PubMed:11278995, ECO:0000269|PubMed:12692129,ECO:0000269|PubMed:16341092, ECO:0000269|PubMed:16601690}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for UBE3C_BAG1 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for UBE3C_BAG1 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for UBE3C_BAG1 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for UBE3C_BAG1 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Hgene | UBE3C | C3495559 | Juvenile arthritis | 1 | CTD_human |
| Tgene | BAG1 | C0005586 | Bipolar Disorder | 5 | PSYGENET |
| Tgene | BAG1 | C0011570 | Mental Depression | 1 | PSYGENET |
| Tgene | BAG1 | C0011581 | Depressive disorder | 1 | PSYGENET |
| Tgene | BAG1 | C0036341 | Schizophrenia | 1 | PSYGENET |
| Tgene | BAG1 | C1134719 | Invasive Ductal Breast Carcinoma | 1 | CTD_human |
| Tgene | BAG1 | C1458155 | Mammary Neoplasms | 1 | CTD_human |
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