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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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Fusion gene ID: 40350

FusionGeneSummary for UBAP1_NFX1

check button Fusion gene summary
Fusion gene informationFusion gene name: UBAP1_NFX1
Fusion gene ID: 40350
HgeneTgene
Gene symbol

UBAP1

NFX1

Gene ID

51271

4799

Gene nameubiquitin associated protein 1nuclear transcription factor, X-box binding 1
SynonymsNAG20|UAP|UBAP|UBAP-1NFX2|TEG-42|Tex42
Cytomap

9p13.3

9p13.3

Type of geneprotein-codingprotein-coding
Descriptionubiquitin-associated protein 1nasopharyngeal carcinoma-associated gene 20 proteintranscriptional repressor NF-X1nuclear transcription factor, X box-binding protein 1
Modification date2018052320180523
UniProtAcc

Q9NZ09

Q12986

Ensembl transtripts involved in fusion geneENST00000536252, ENST00000545103, 
ENST00000540348, ENST00000543944, 
ENST00000297661, ENST00000379186, 
ENST00000359544, 
ENST00000379540, 
ENST00000379521, ENST00000318524, 
ENST00000463421, 
Fusion gene scores* DoF score5 X 5 X 5=1259 X 8 X 5=360
# samples 69
** MAII scorelog2(6/125*10)=-1.05889368905357
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(9/360*10)=-2
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: UBAP1 [Title/Abstract] AND NFX1 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
TgeneNFX1

GO:0000122

negative regulation of transcription by RNA polymerase II

7964459


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGALDBRCATCGA-AC-A2BK-01AUBAP1chr9

34179238

+NFX1chr9

33338508

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5UTR-3CDSENST00000536252ENST00000379540UBAP1chr9

34179238

+NFX1chr9

33338508

+
5UTR-3CDSENST00000536252ENST00000379521UBAP1chr9

34179238

+NFX1chr9

33338508

+
5UTR-3CDSENST00000536252ENST00000318524UBAP1chr9

34179238

+NFX1chr9

33338508

+
5UTR-intronENST00000536252ENST00000463421UBAP1chr9

34179238

+NFX1chr9

33338508

+
In-frameENST00000545103ENST00000379540UBAP1chr9

34179238

+NFX1chr9

33338508

+
In-frameENST00000545103ENST00000379521UBAP1chr9

34179238

+NFX1chr9

33338508

+
In-frameENST00000545103ENST00000318524UBAP1chr9

34179238

+NFX1chr9

33338508

+
5CDS-intronENST00000545103ENST00000463421UBAP1chr9

34179238

+NFX1chr9

33338508

+
5UTR-3CDSENST00000540348ENST00000379540UBAP1chr9

34179238

+NFX1chr9

33338508

+
5UTR-3CDSENST00000540348ENST00000379521UBAP1chr9

34179238

+NFX1chr9

33338508

+
5UTR-3CDSENST00000540348ENST00000318524UBAP1chr9

34179238

+NFX1chr9

33338508

+
5UTR-intronENST00000540348ENST00000463421UBAP1chr9

34179238

+NFX1chr9

33338508

+
In-frameENST00000543944ENST00000379540UBAP1chr9

34179238

+NFX1chr9

33338508

+
In-frameENST00000543944ENST00000379521UBAP1chr9

34179238

+NFX1chr9

33338508

+
In-frameENST00000543944ENST00000318524UBAP1chr9

34179238

+NFX1chr9

33338508

+
5CDS-intronENST00000543944ENST00000463421UBAP1chr9

34179238

+NFX1chr9

33338508

+
5UTR-3CDSENST00000297661ENST00000379540UBAP1chr9

34179238

+NFX1chr9

33338508

+
5UTR-3CDSENST00000297661ENST00000379521UBAP1chr9

34179238

+NFX1chr9

33338508

+
5UTR-3CDSENST00000297661ENST00000318524UBAP1chr9

34179238

+NFX1chr9

33338508

+
5UTR-intronENST00000297661ENST00000463421UBAP1chr9

34179238

+NFX1chr9

33338508

+
5UTR-3CDSENST00000379186ENST00000379540UBAP1chr9

34179238

+NFX1chr9

33338508

+
5UTR-3CDSENST00000379186ENST00000379521UBAP1chr9

34179238

+NFX1chr9

33338508

+
5UTR-3CDSENST00000379186ENST00000318524UBAP1chr9

34179238

+NFX1chr9

33338508

+
5UTR-intronENST00000379186ENST00000463421UBAP1chr9

34179238

+NFX1chr9

33338508

+
intron-3CDSENST00000359544ENST00000379540UBAP1chr9

34179238

+NFX1chr9

33338508

+
intron-3CDSENST00000359544ENST00000379521UBAP1chr9

34179238

+NFX1chr9

33338508

+
intron-3CDSENST00000359544ENST00000318524UBAP1chr9

34179238

+NFX1chr9

33338508

+
intron-intronENST00000359544ENST00000463421UBAP1chr9

34179238

+NFX1chr9

33338508

+

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FusionProtFeatures for UBAP1_NFX1


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
UBAP1

Q9NZ09

NFX1

Q12986

Binds to the X-box motif of MHC class II genes andrepresses their expression. May play an important role inregulating the duration of an inflammatory response by limitingthe period in which MHC class II molecules are induced byinterferon-gamma. Isoform 3 binds to the X-box motif of TERTpromoter and represses its expression. Together with PABPC1 orPABPC4, isoform 1 acts as a coactivator for TERT expression.Mediates E2-dependent ubiquitination.{ECO:0000269|PubMed:10500182, ECO:0000269|PubMed:15371341,ECO:0000269|PubMed:17267499}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for UBAP1_NFX1


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.
>In-frame_UBAP1_ENST00000545103_chr9_34179238_+_NFX1_ENST00000379540_chr9_33338508_+_518aa
MSGAVRGRRREVGLQHGGCGTGGGYGDGLARSGQSWRWWRSLSLGAVGSSAGTEPGRPAGASTFRLLRRRQQRHSDATFMCDKRCNKKRL
CGRHKCNEICCVDKEHKCPLICGRKLRCGLHRCEEPCHRGNCQTCWQASFDELTCHCGASVIYPPVPCGTRPPECTQTCARVHECDHPVY
HSCHSEEKCPPCTFLTQKWCMGKHEFRSNIPCHLVDISCGLPCSATLPCGMHKCQRLCHKGECLVDEPCKQPCTTPRADCGHPCMAPCHT
SSPCPVTACKAKVELQCECGRRKEMVICSEASSTYQRIAAISMASKITDMQLGGSVEISKLITKKEVHQARLECDEECSALERKKRLAEA
FHISEDSDPFNIRSSGSKFSDSLKEDARKDLKFVSDVEKEMETLVEAVNKGKNSKKSHSFPPMNRDHRRIIHDLAQVYGLESVSYDSEPK

>In-frame_UBAP1_ENST00000545103_chr9_34179238_+_NFX1_ENST00000379521_chr9_33338508_+_422aa
MSGAVRGRRREVGLQHGGCGTGGGYGDGLARSGQSWRWWRSLSLGAVGSSAGTEPGRPAGASTFRLLRRRQQRHSDATFMCDKRCNKKRL
CGRHKCNEICCVDKEHKCPLICGRKLRCGLHRCEEPCHRGNCQTCWQASFDELTCHCGASVIYPPVPCGTRPPECTQTCARVHECDHPVY
HSCHSEEKCPPCTFLTQKWCMGKHEFRSNIPCHLVDISCGLPCSATLPCGMHKCQRLCHKGECLVDEPCKQPCTTPRADCGHPCMAPCHT
SSPCPVTACKAKVELQCECGRRKEMVICSEASSTYQRIAAISMASKITDMQLGGSVEISKLITKKEVHQARLECDEECSALERKKRLAEA

>In-frame_UBAP1_ENST00000545103_chr9_34179238_+_NFX1_ENST00000318524_chr9_33338508_+_231aa
MSGAVRGRRREVGLQHGGCGTGGGYGDGLARSGQSWRWWRSLSLGAVGSSAGTEPGRPAGASTFRLLRRRQQRHSDATFMCDKRCNKKRL
CGRHKCNEICCVDKEHKCPLICGRKLRCGLHRCEEPCHRGNCQTCWQASFDELTCHCGASVIYPPVPCGTRPPECTQTCARVHECDHPVY

>In-frame_UBAP1_ENST00000543944_chr9_34179238_+_NFX1_ENST00000379540_chr9_33338508_+_518aa
MSGAVRGRRREVGLQHGGCGTGGGYGDGLARSGQSWRWWRSLSLGAVGSSAGTEPGRPAGASTFRLLRRRQQRHSDATFMCDKRCNKKRL
CGRHKCNEICCVDKEHKCPLICGRKLRCGLHRCEEPCHRGNCQTCWQASFDELTCHCGASVIYPPVPCGTRPPECTQTCARVHECDHPVY
HSCHSEEKCPPCTFLTQKWCMGKHEFRSNIPCHLVDISCGLPCSATLPCGMHKCQRLCHKGECLVDEPCKQPCTTPRADCGHPCMAPCHT
SSPCPVTACKAKVELQCECGRRKEMVICSEASSTYQRIAAISMASKITDMQLGGSVEISKLITKKEVHQARLECDEECSALERKKRLAEA
FHISEDSDPFNIRSSGSKFSDSLKEDARKDLKFVSDVEKEMETLVEAVNKGKNSKKSHSFPPMNRDHRRIIHDLAQVYGLESVSYDSEPK

>In-frame_UBAP1_ENST00000543944_chr9_34179238_+_NFX1_ENST00000379521_chr9_33338508_+_422aa
MSGAVRGRRREVGLQHGGCGTGGGYGDGLARSGQSWRWWRSLSLGAVGSSAGTEPGRPAGASTFRLLRRRQQRHSDATFMCDKRCNKKRL
CGRHKCNEICCVDKEHKCPLICGRKLRCGLHRCEEPCHRGNCQTCWQASFDELTCHCGASVIYPPVPCGTRPPECTQTCARVHECDHPVY
HSCHSEEKCPPCTFLTQKWCMGKHEFRSNIPCHLVDISCGLPCSATLPCGMHKCQRLCHKGECLVDEPCKQPCTTPRADCGHPCMAPCHT
SSPCPVTACKAKVELQCECGRRKEMVICSEASSTYQRIAAISMASKITDMQLGGSVEISKLITKKEVHQARLECDEECSALERKKRLAEA

>In-frame_UBAP1_ENST00000543944_chr9_34179238_+_NFX1_ENST00000318524_chr9_33338508_+_231aa
MSGAVRGRRREVGLQHGGCGTGGGYGDGLARSGQSWRWWRSLSLGAVGSSAGTEPGRPAGASTFRLLRRRQQRHSDATFMCDKRCNKKRL
CGRHKCNEICCVDKEHKCPLICGRKLRCGLHRCEEPCHRGNCQTCWQASFDELTCHCGASVIYPPVPCGTRPPECTQTCARVHECDHPVY


* Fusion transcript sequences (only coding sequence (CDS) region).
>In-frame_UBAP1_ENST00000545103_chr9_34179238_+_NFX1_ENST00000379540_chr9_33338508_+_1554nt
ATGAGTGGGGCGGTGAGGGGAAGGAGGAGGGAAGTAGGACTTCAACATGGCGGCTGCGGCACTGGCGGTGGCTACGGTGACGGCCTGGCC
CGGAGCGGGCAGAGTTGGAGGTGGTGGCGTTCGCTCTCCCTAGGGGCTGTCGGGAGCTCAGCGGGGACCGAGCCTGGGAGGCCGGCCGGT
GCCAGCACCTTTCGGCTTCTGAGACGGCGGCAGCAGCGGCATTCAGATGCTACATTTATGTGTGACAAGCGGTGTAACAAGAAACGGTTG
TGTGGACGGCATAAATGTAATGAGATATGCTGTGTGGATAAGGAGCACAAGTGTCCTTTGATTTGTGGGAGGAAACTCCGTTGTGGCCTT
CATAGGTGTGAAGAACCTTGTCATCGTGGAAACTGCCAGACATGCTGGCAAGCCAGTTTTGATGAATTAACCTGCCATTGTGGTGCATCA
GTGATTTACCCTCCAGTTCCCTGTGGTACTAGGCCCCCTGAATGTACCCAAACCTGCGCTAGAGTCCATGAGTGTGACCATCCAGTATAT
CATTCTTGTCATAGTGAGGAGAAGTGTCCCCCTTGCACTTTCCTAACTCAGAAGTGGTGCATGGGCAAGCATGAGTTTCGGAGCAACATC
CCCTGTCACCTGGTTGATATCTCTTGCGGATTACCCTGCAGTGCCACGCTACCATGTGGGATGCACAAATGTCAGAGACTCTGTCACAAA
GGGGAGTGTCTTGTGGATGAGCCCTGCAAGCAGCCCTGCACCACCCCCAGAGCTGACTGTGGTCACCCGTGTATGGCACCCTGCCATACC
AGCTCACCCTGCCCTGTGACTGCTTGTAAAGCTAAGGTAGAGCTACAGTGTGAATGTGGACGAAGAAAAGAGATGGTGATTTGCTCTGAA
GCATCTAGTACTTATCAAAGAATAGCTGCAATCTCCATGGCCTCTAAGATAACAGACATGCAGCTTGGAGGTTCAGTGGAGATCAGCAAG
TTAATTACCAAAAAGGAAGTTCATCAAGCCAGGCTGGAGTGTGATGAGGAGTGTTCAGCCTTGGAAAGGAAAAAGAGATTAGCAGAGGCA
TTTCATATCAGTGAGGATTCTGATCCTTTCAATATACGTTCTTCAGGGTCAAAATTCAGTGATAGTTTGAAAGAAGATGCCAGGAAGGAC
TTAAAGTTTGTCAGTGACGTTGAGAAGGAAATGGAAACCCTCGTGGAGGCCGTGAATAAGGGAAAGAATAGTAAGAAAAGCCACAGCTTC
CCTCCCATGAACAGAGACCACCGCCGGATCATCCATGACTTGGCCCAAGTTTATGGCCTGGAGAGCGTGAGCTATGACAGTGAACCGAAG
CGCAATGTGGTGGTCACTGCCATCAGGGGGAAGTCCGTTTGTCCTCCTACCACGCTGACAGGTGTGCTTGAAAGGGAAATGCAGGCACGG
CCTCCACCACCGATTCCTCATCACAGACATCAGTCAGACAAGAATCCTGGGAGCAGTAATTTACAGAAAATAACCAAGGAGCCAATAATT

>In-frame_UBAP1_ENST00000545103_chr9_34179238_+_NFX1_ENST00000379521_chr9_33338508_+_1266nt
ATGAGTGGGGCGGTGAGGGGAAGGAGGAGGGAAGTAGGACTTCAACATGGCGGCTGCGGCACTGGCGGTGGCTACGGTGACGGCCTGGCC
CGGAGCGGGCAGAGTTGGAGGTGGTGGCGTTCGCTCTCCCTAGGGGCTGTCGGGAGCTCAGCGGGGACCGAGCCTGGGAGGCCGGCCGGT
GCCAGCACCTTTCGGCTTCTGAGACGGCGGCAGCAGCGGCATTCAGATGCTACATTTATGTGTGACAAGCGGTGTAACAAGAAACGGTTG
TGTGGACGGCATAAATGTAATGAGATATGCTGTGTGGATAAGGAGCACAAGTGTCCTTTGATTTGTGGGAGGAAACTCCGTTGTGGCCTT
CATAGGTGTGAAGAACCTTGTCATCGTGGAAACTGCCAGACATGCTGGCAAGCCAGTTTTGATGAATTAACCTGCCATTGTGGTGCATCA
GTGATTTACCCTCCAGTTCCCTGTGGTACTAGGCCCCCTGAATGTACCCAAACCTGCGCTAGAGTCCATGAGTGTGACCATCCAGTATAT
CATTCTTGTCATAGTGAGGAGAAGTGTCCCCCTTGCACTTTCCTAACTCAGAAGTGGTGCATGGGCAAGCATGAGTTTCGGAGCAACATC
CCCTGTCACCTGGTTGATATCTCTTGCGGATTACCCTGCAGTGCCACGCTACCATGTGGGATGCACAAATGTCAGAGACTCTGTCACAAA
GGGGAGTGTCTTGTGGATGAGCCCTGCAAGCAGCCCTGCACCACCCCCAGAGCTGACTGTGGTCACCCGTGTATGGCACCCTGCCATACC
AGCTCACCCTGCCCTGTGACTGCTTGTAAAGCTAAGGTAGAGCTACAGTGTGAATGTGGACGAAGAAAAGAGATGGTGATTTGCTCTGAA
GCATCTAGTACTTATCAAAGAATAGCTGCAATCTCCATGGCCTCTAAGATAACAGACATGCAGCTTGGAGGTTCAGTGGAGATCAGCAAG
TTAATTACCAAAAAGGAAGTTCATCAAGCCAGGCTGGAGTGTGATGAGGAGTGTTCAGCCTTGGAAAGGAAAAAGAGATTAGCAGAGGCA
TTTCATATCAGTGAGGATTCTGATCCTTTCAATATACGTTCTTCAGGGTCAAAATTCAGTGATAGTTTGAAAGAAGATGCCAGGAAGGAC
TTAAAGTTTGTCAGTGACGTTGAGAAGGAAATGGAAACCCTCGTGGAGGCCGTGAATAAGGTTGAAGTCGAAACATCCCACTGGACATTT

>In-frame_UBAP1_ENST00000545103_chr9_34179238_+_NFX1_ENST00000318524_chr9_33338508_+_693nt
ATGAGTGGGGCGGTGAGGGGAAGGAGGAGGGAAGTAGGACTTCAACATGGCGGCTGCGGCACTGGCGGTGGCTACGGTGACGGCCTGGCC
CGGAGCGGGCAGAGTTGGAGGTGGTGGCGTTCGCTCTCCCTAGGGGCTGTCGGGAGCTCAGCGGGGACCGAGCCTGGGAGGCCGGCCGGT
GCCAGCACCTTTCGGCTTCTGAGACGGCGGCAGCAGCGGCATTCAGATGCTACATTTATGTGTGACAAGCGGTGTAACAAGAAACGGTTG
TGTGGACGGCATAAATGTAATGAGATATGCTGTGTGGATAAGGAGCACAAGTGTCCTTTGATTTGTGGGAGGAAACTCCGTTGTGGCCTT
CATAGGTGTGAAGAACCTTGTCATCGTGGAAACTGCCAGACATGCTGGCAAGCCAGTTTTGATGAATTAACCTGCCATTGTGGTGCATCA
GTGATTTACCCTCCAGTTCCCTGTGGTACTAGGCCCCCTGAATGTACCCAAACCTGCGCTAGAGTCCATGAGTGTGACCATCCAGTATAT
CATTCTTGTCATAGTGAGGAGAAGTGTCCCCCTTGCACTTTCCTAACTCAGAAGTGGTGCATGGGCAAGCATGAGCAGTCCCACTACTGG

>In-frame_UBAP1_ENST00000543944_chr9_34179238_+_NFX1_ENST00000379540_chr9_33338508_+_1554nt
ATGAGTGGGGCGGTGAGGGGAAGGAGGAGGGAAGTAGGACTTCAACATGGCGGCTGCGGCACTGGCGGTGGCTACGGTGACGGCCTGGCC
CGGAGCGGGCAGAGTTGGAGGTGGTGGCGTTCGCTCTCCCTAGGGGCTGTCGGGAGCTCAGCGGGGACCGAGCCTGGGAGGCCGGCCGGT
GCCAGCACCTTTCGGCTTCTGAGACGGCGGCAGCAGCGGCATTCAGATGCTACATTTATGTGTGACAAGCGGTGTAACAAGAAACGGTTG
TGTGGACGGCATAAATGTAATGAGATATGCTGTGTGGATAAGGAGCACAAGTGTCCTTTGATTTGTGGGAGGAAACTCCGTTGTGGCCTT
CATAGGTGTGAAGAACCTTGTCATCGTGGAAACTGCCAGACATGCTGGCAAGCCAGTTTTGATGAATTAACCTGCCATTGTGGTGCATCA
GTGATTTACCCTCCAGTTCCCTGTGGTACTAGGCCCCCTGAATGTACCCAAACCTGCGCTAGAGTCCATGAGTGTGACCATCCAGTATAT
CATTCTTGTCATAGTGAGGAGAAGTGTCCCCCTTGCACTTTCCTAACTCAGAAGTGGTGCATGGGCAAGCATGAGTTTCGGAGCAACATC
CCCTGTCACCTGGTTGATATCTCTTGCGGATTACCCTGCAGTGCCACGCTACCATGTGGGATGCACAAATGTCAGAGACTCTGTCACAAA
GGGGAGTGTCTTGTGGATGAGCCCTGCAAGCAGCCCTGCACCACCCCCAGAGCTGACTGTGGTCACCCGTGTATGGCACCCTGCCATACC
AGCTCACCCTGCCCTGTGACTGCTTGTAAAGCTAAGGTAGAGCTACAGTGTGAATGTGGACGAAGAAAAGAGATGGTGATTTGCTCTGAA
GCATCTAGTACTTATCAAAGAATAGCTGCAATCTCCATGGCCTCTAAGATAACAGACATGCAGCTTGGAGGTTCAGTGGAGATCAGCAAG
TTAATTACCAAAAAGGAAGTTCATCAAGCCAGGCTGGAGTGTGATGAGGAGTGTTCAGCCTTGGAAAGGAAAAAGAGATTAGCAGAGGCA
TTTCATATCAGTGAGGATTCTGATCCTTTCAATATACGTTCTTCAGGGTCAAAATTCAGTGATAGTTTGAAAGAAGATGCCAGGAAGGAC
TTAAAGTTTGTCAGTGACGTTGAGAAGGAAATGGAAACCCTCGTGGAGGCCGTGAATAAGGGAAAGAATAGTAAGAAAAGCCACAGCTTC
CCTCCCATGAACAGAGACCACCGCCGGATCATCCATGACTTGGCCCAAGTTTATGGCCTGGAGAGCGTGAGCTATGACAGTGAACCGAAG
CGCAATGTGGTGGTCACTGCCATCAGGGGGAAGTCCGTTTGTCCTCCTACCACGCTGACAGGTGTGCTTGAAAGGGAAATGCAGGCACGG
CCTCCACCACCGATTCCTCATCACAGACATCAGTCAGACAAGAATCCTGGGAGCAGTAATTTACAGAAAATAACCAAGGAGCCAATAATT

>In-frame_UBAP1_ENST00000543944_chr9_34179238_+_NFX1_ENST00000379521_chr9_33338508_+_1266nt
ATGAGTGGGGCGGTGAGGGGAAGGAGGAGGGAAGTAGGACTTCAACATGGCGGCTGCGGCACTGGCGGTGGCTACGGTGACGGCCTGGCC
CGGAGCGGGCAGAGTTGGAGGTGGTGGCGTTCGCTCTCCCTAGGGGCTGTCGGGAGCTCAGCGGGGACCGAGCCTGGGAGGCCGGCCGGT
GCCAGCACCTTTCGGCTTCTGAGACGGCGGCAGCAGCGGCATTCAGATGCTACATTTATGTGTGACAAGCGGTGTAACAAGAAACGGTTG
TGTGGACGGCATAAATGTAATGAGATATGCTGTGTGGATAAGGAGCACAAGTGTCCTTTGATTTGTGGGAGGAAACTCCGTTGTGGCCTT
CATAGGTGTGAAGAACCTTGTCATCGTGGAAACTGCCAGACATGCTGGCAAGCCAGTTTTGATGAATTAACCTGCCATTGTGGTGCATCA
GTGATTTACCCTCCAGTTCCCTGTGGTACTAGGCCCCCTGAATGTACCCAAACCTGCGCTAGAGTCCATGAGTGTGACCATCCAGTATAT
CATTCTTGTCATAGTGAGGAGAAGTGTCCCCCTTGCACTTTCCTAACTCAGAAGTGGTGCATGGGCAAGCATGAGTTTCGGAGCAACATC
CCCTGTCACCTGGTTGATATCTCTTGCGGATTACCCTGCAGTGCCACGCTACCATGTGGGATGCACAAATGTCAGAGACTCTGTCACAAA
GGGGAGTGTCTTGTGGATGAGCCCTGCAAGCAGCCCTGCACCACCCCCAGAGCTGACTGTGGTCACCCGTGTATGGCACCCTGCCATACC
AGCTCACCCTGCCCTGTGACTGCTTGTAAAGCTAAGGTAGAGCTACAGTGTGAATGTGGACGAAGAAAAGAGATGGTGATTTGCTCTGAA
GCATCTAGTACTTATCAAAGAATAGCTGCAATCTCCATGGCCTCTAAGATAACAGACATGCAGCTTGGAGGTTCAGTGGAGATCAGCAAG
TTAATTACCAAAAAGGAAGTTCATCAAGCCAGGCTGGAGTGTGATGAGGAGTGTTCAGCCTTGGAAAGGAAAAAGAGATTAGCAGAGGCA
TTTCATATCAGTGAGGATTCTGATCCTTTCAATATACGTTCTTCAGGGTCAAAATTCAGTGATAGTTTGAAAGAAGATGCCAGGAAGGAC
TTAAAGTTTGTCAGTGACGTTGAGAAGGAAATGGAAACCCTCGTGGAGGCCGTGAATAAGGTTGAAGTCGAAACATCCCACTGGACATTT

>In-frame_UBAP1_ENST00000543944_chr9_34179238_+_NFX1_ENST00000318524_chr9_33338508_+_693nt
ATGAGTGGGGCGGTGAGGGGAAGGAGGAGGGAAGTAGGACTTCAACATGGCGGCTGCGGCACTGGCGGTGGCTACGGTGACGGCCTGGCC
CGGAGCGGGCAGAGTTGGAGGTGGTGGCGTTCGCTCTCCCTAGGGGCTGTCGGGAGCTCAGCGGGGACCGAGCCTGGGAGGCCGGCCGGT
GCCAGCACCTTTCGGCTTCTGAGACGGCGGCAGCAGCGGCATTCAGATGCTACATTTATGTGTGACAAGCGGTGTAACAAGAAACGGTTG
TGTGGACGGCATAAATGTAATGAGATATGCTGTGTGGATAAGGAGCACAAGTGTCCTTTGATTTGTGGGAGGAAACTCCGTTGTGGCCTT
CATAGGTGTGAAGAACCTTGTCATCGTGGAAACTGCCAGACATGCTGGCAAGCCAGTTTTGATGAATTAACCTGCCATTGTGGTGCATCA
GTGATTTACCCTCCAGTTCCCTGTGGTACTAGGCCCCCTGAATGTACCCAAACCTGCGCTAGAGTCCATGAGTGTGACCATCCAGTATAT
CATTCTTGTCATAGTGAGGAGAAGTGTCCCCCTTGCACTTTCCTAACTCAGAAGTGGTGCATGGGCAAGCATGAGCAGTCCCACTACTGG


* Fusion transcript sequences (Full-length transcript).
>In-frame_UBAP1_ENST00000545103_chr9_34179238_+_NFX1_ENST00000379540_chr9_33338508_+_2743nt
AGACGCCCAAATGAGTGGGGCGGTGAGGGGAAGGAGGAGGGAAGTAGGACTTCAACATGGCGGCTGCGGCACTGGCGGTGGCTACGGTGA
CGGCCTGGCCCGGAGCGGGCAGAGTTGGAGGTGGTGGCGTTCGCTCTCCCTAGGGGCTGTCGGGAGCTCAGCGGGGACCGAGCCTGGGAG
GCCGGCCGGTGCCAGCACCTTTCGGCTTCTGAGACGGCGGCAGCAGCGGCATTCAGATGCTACATTTATGTGTGACAAGCGGTGTAACAA
GAAACGGTTGTGTGGACGGCATAAATGTAATGAGATATGCTGTGTGGATAAGGAGCACAAGTGTCCTTTGATTTGTGGGAGGAAACTCCG
TTGTGGCCTTCATAGGTGTGAAGAACCTTGTCATCGTGGAAACTGCCAGACATGCTGGCAAGCCAGTTTTGATGAATTAACCTGCCATTG
TGGTGCATCAGTGATTTACCCTCCAGTTCCCTGTGGTACTAGGCCCCCTGAATGTACCCAAACCTGCGCTAGAGTCCATGAGTGTGACCA
TCCAGTATATCATTCTTGTCATAGTGAGGAGAAGTGTCCCCCTTGCACTTTCCTAACTCAGAAGTGGTGCATGGGCAAGCATGAGTTTCG
GAGCAACATCCCCTGTCACCTGGTTGATATCTCTTGCGGATTACCCTGCAGTGCCACGCTACCATGTGGGATGCACAAATGTCAGAGACT
CTGTCACAAAGGGGAGTGTCTTGTGGATGAGCCCTGCAAGCAGCCCTGCACCACCCCCAGAGCTGACTGTGGTCACCCGTGTATGGCACC
CTGCCATACCAGCTCACCCTGCCCTGTGACTGCTTGTAAAGCTAAGGTAGAGCTACAGTGTGAATGTGGACGAAGAAAAGAGATGGTGAT
TTGCTCTGAAGCATCTAGTACTTATCAAAGAATAGCTGCAATCTCCATGGCCTCTAAGATAACAGACATGCAGCTTGGAGGTTCAGTGGA
GATCAGCAAGTTAATTACCAAAAAGGAAGTTCATCAAGCCAGGCTGGAGTGTGATGAGGAGTGTTCAGCCTTGGAAAGGAAAAAGAGATT
AGCAGAGGCATTTCATATCAGTGAGGATTCTGATCCTTTCAATATACGTTCTTCAGGGTCAAAATTCAGTGATAGTTTGAAAGAAGATGC
CAGGAAGGACTTAAAGTTTGTCAGTGACGTTGAGAAGGAAATGGAAACCCTCGTGGAGGCCGTGAATAAGGGAAAGAATAGTAAGAAAAG
CCACAGCTTCCCTCCCATGAACAGAGACCACCGCCGGATCATCCATGACTTGGCCCAAGTTTATGGCCTGGAGAGCGTGAGCTATGACAG
TGAACCGAAGCGCAATGTGGTGGTCACTGCCATCAGGGGGAAGTCCGTTTGTCCTCCTACCACGCTGACAGGTGTGCTTGAAAGGGAAAT
GCAGGCACGGCCTCCACCACCGATTCCTCATCACAGACATCAGTCAGACAAGAATCCTGGGAGCAGTAATTTACAGAAAATAACCAAGGA
GCCAATAATTGACTATTTTGACGTCCAGGACTAAGAAGATCATGATGCACTTAGATAAAAGAATGATTAGGTATAGTGGAGACTTATTTG
CCAGCAGATAAATCATGCCCGTTCCCCTCTGCCTGGCAGAATCACAGTCTCACATACTGTCTTGTACTGACACATCCAAAGCATGAGTGT
GTCAGAAATCCCTTGTCTATTCCTGTCTGTATAAAGTGTTTCATTATGACCAGATCTCTGATTGTATGGTCACTAGGTATGCAATCACGC
ATTCAAAGAGGCTCTTTACACCATCACTGTGATTGCTCTGAGAGTTGAGGGACTATTGGGCTTTATTTGGACAAACCAAACTTTTAGCCT
GAAACCAACTTTATGCCACTAAGTCATAGCCTCAGTTGTCCCAGTTATTTGTCCTCCTGAAAATGCCTGAAACATCAGACAGACATTGCT
TGCTTTACCCAAACTGATCAAAATCTTTAGGAGCACAAATGAATTTTTTAGTCTGAAATACCAAATAATGAATTGGTATACCATATCCGG
AATCACACATGTTATCTTAAACCCAGCCATCATACCTAAGTCTTTTGCCAAAACCTCTCATAGGTATATCTAGCTGAACTTATTTTGGCA
TTTTCAATGTGATCAGTTCTAGACCTAGAAGGGGGTCAGGCTGCTTTACAGAATTCTATTTCCTTAAGTCCCTGGCACTTCTCATACCAC
ATCACTGAACCTGTTCAGTAACAATCAGTTTGGCCGTCCCCCATGATGGTAGGAAATATAGAGAGCAAGTTCTTCTGCCAGGGTCACACT
GTGGTCTCTGAACTGACCAGTATATCCCTAACTCCTCTTTGATAGAGAAAGAGTCTCAAATGGACAACTGTCCTGTGTTGCTTTCCCTAG
GCCTTCAGCAGCCTATTGGCTCTCCCTGCCTCTGAGCTCTGGACTCTGTTTGAATATTCCAAGTAGTATATGGACAGTCCAGGGCTTATG
CCCAGCAGCCCACTGGAGGCATTCTTCAGGCTCCTTTAAGGCAGGTGCATTGATAGTTCCATTAGTGTGACCCTTGCATTGGCACCCCTC
CAGCCTGGAGGCCAGGCTTCCAGCAACTTCCTTCTGCCCTAGAGCAAGCCATGAGCCCCAGAGCAGTAGCAGGAGACTTGAGAAGTAGAG

>In-frame_UBAP1_ENST00000545103_chr9_34179238_+_NFX1_ENST00000379521_chr9_33338508_+_1749nt
AGACGCCCAAATGAGTGGGGCGGTGAGGGGAAGGAGGAGGGAAGTAGGACTTCAACATGGCGGCTGCGGCACTGGCGGTGGCTACGGTGA
CGGCCTGGCCCGGAGCGGGCAGAGTTGGAGGTGGTGGCGTTCGCTCTCCCTAGGGGCTGTCGGGAGCTCAGCGGGGACCGAGCCTGGGAG
GCCGGCCGGTGCCAGCACCTTTCGGCTTCTGAGACGGCGGCAGCAGCGGCATTCAGATGCTACATTTATGTGTGACAAGCGGTGTAACAA
GAAACGGTTGTGTGGACGGCATAAATGTAATGAGATATGCTGTGTGGATAAGGAGCACAAGTGTCCTTTGATTTGTGGGAGGAAACTCCG
TTGTGGCCTTCATAGGTGTGAAGAACCTTGTCATCGTGGAAACTGCCAGACATGCTGGCAAGCCAGTTTTGATGAATTAACCTGCCATTG
TGGTGCATCAGTGATTTACCCTCCAGTTCCCTGTGGTACTAGGCCCCCTGAATGTACCCAAACCTGCGCTAGAGTCCATGAGTGTGACCA
TCCAGTATATCATTCTTGTCATAGTGAGGAGAAGTGTCCCCCTTGCACTTTCCTAACTCAGAAGTGGTGCATGGGCAAGCATGAGTTTCG
GAGCAACATCCCCTGTCACCTGGTTGATATCTCTTGCGGATTACCCTGCAGTGCCACGCTACCATGTGGGATGCACAAATGTCAGAGACT
CTGTCACAAAGGGGAGTGTCTTGTGGATGAGCCCTGCAAGCAGCCCTGCACCACCCCCAGAGCTGACTGTGGTCACCCGTGTATGGCACC
CTGCCATACCAGCTCACCCTGCCCTGTGACTGCTTGTAAAGCTAAGGTAGAGCTACAGTGTGAATGTGGACGAAGAAAAGAGATGGTGAT
TTGCTCTGAAGCATCTAGTACTTATCAAAGAATAGCTGCAATCTCCATGGCCTCTAAGATAACAGACATGCAGCTTGGAGGTTCAGTGGA
GATCAGCAAGTTAATTACCAAAAAGGAAGTTCATCAAGCCAGGCTGGAGTGTGATGAGGAGTGTTCAGCCTTGGAAAGGAAAAAGAGATT
AGCAGAGGCATTTCATATCAGTGAGGATTCTGATCCTTTCAATATACGTTCTTCAGGGTCAAAATTCAGTGATAGTTTGAAAGAAGATGC
CAGGAAGGACTTAAAGTTTGTCAGTGACGTTGAGAAGGAAATGGAAACCCTCGTGGAGGCCGTGAATAAGGTTGAAGTCGAAACATCCCA
CTGGACATTTCTCTAAGGCCAGCTTGATGAAAAAAAAAAAGCAATCAAGTCCTGGAAACACTTTCAACCTAGAGTAGTTGTAGGAAAAAG
TCACAACTTCTTTGAGGATCCTTATCTTTCTCAAAACACAGCCATTATAACATCTGTGGAAGCCTGTCCTGGTTCAGGACAGTTGACTGC
AGAAAAGATCTACAGTCGGCTGGGCACAGTGTCTCATGCCTGTAATGCCAGCACTTTGGGAGGCCAAGGCAGGCAGATCACTTGAGGTCA
GGAGTTCTAGATCAGCTTGGCCAACATGACGAAACCCTGTCTCTACTAAAAATATAAAAATTAGCTGGGTGTGGTGGCGGGCACCTGTTA
TTCCAGCTACTTGCAAGGCTTAGGCAGGAGAATTCCTTGAACCCGGGAGGCAGAGGTTGCTGTGAGCTGAGATTCTGCCACTGCACTCCA

>In-frame_UBAP1_ENST00000545103_chr9_34179238_+_NFX1_ENST00000318524_chr9_33338508_+_1686nt
AGACGCCCAAATGAGTGGGGCGGTGAGGGGAAGGAGGAGGGAAGTAGGACTTCAACATGGCGGCTGCGGCACTGGCGGTGGCTACGGTGA
CGGCCTGGCCCGGAGCGGGCAGAGTTGGAGGTGGTGGCGTTCGCTCTCCCTAGGGGCTGTCGGGAGCTCAGCGGGGACCGAGCCTGGGAG
GCCGGCCGGTGCCAGCACCTTTCGGCTTCTGAGACGGCGGCAGCAGCGGCATTCAGATGCTACATTTATGTGTGACAAGCGGTGTAACAA
GAAACGGTTGTGTGGACGGCATAAATGTAATGAGATATGCTGTGTGGATAAGGAGCACAAGTGTCCTTTGATTTGTGGGAGGAAACTCCG
TTGTGGCCTTCATAGGTGTGAAGAACCTTGTCATCGTGGAAACTGCCAGACATGCTGGCAAGCCAGTTTTGATGAATTAACCTGCCATTG
TGGTGCATCAGTGATTTACCCTCCAGTTCCCTGTGGTACTAGGCCCCCTGAATGTACCCAAACCTGCGCTAGAGTCCATGAGTGTGACCA
TCCAGTATATCATTCTTGTCATAGTGAGGAGAAGTGTCCCCCTTGCACTTTCCTAACTCAGAAGTGGTGCATGGGCAAGCATGAGCAGTC
CCACTACTGGGCGTCTACCCAGAAGAAAAGAAGTCATTATATGAAAAAGATACCTGCACACGCATGTTTATAGCAGCACAATTCACAATT
GCAAAAATGTGGAACCAGCCCAACTGCCCATCAGTCAACAAGTGGATAAAGAAATTGTGGTGTATCTATACGTACCATGGAATACTACTC
AGCCAGGAACGAAATAATGGCATTCACAGCAACCTGGATGGATTTGGAGACCATTATTCTAAGTGAAGTAACTCAGGAATGGAAAACCAA
ACATCGTATGTTCTCAATTATAAGAGGGAGCTAAGCTATGAGGACGCAAAGGCATGAGAATGATACAATGGACTTTGGGGACTCTGGGGA
AAGGACGGGAGGCGGGTGAGGGATAAAAAACTACACACTGGGTCCGAGCACGGTGGCTCATGCCTATAATCCCAGCACTTTGGGAGGCCA
AGGCAGGTAGATTATGAGGTCGGGAGTTCGAAACCAGCCTGGCCAACAAGGTGAGACCCCCCCCATCTCTACTAAAATAATTAGCCGGGC
CTGGTGGCGCATCCCTGTAATCCCAGCTACTTTACTTGGGAGGCTGAGGCAGGAGAATTGCTTGAACTCGGGAGGCGGATGTTGCAGTGA
GCCAATATCGCACCACTGCACTCCAGCCTGGGCAACAGAGCAAGACTCCGTCTCGAAAAAAAAAATAAATTTTAAAAACTACACATTGGG
TACAATGTACACTCCTCGGGTGATGGGTGCACCAAAATCTCAAAAATCACTACTAAGGAACTTATCCATGTAACCAAACACCACCTGTTC
CCCAAGAACTATTGAAATAAGAAAAAAGAAAAAAAAAAAATCACTGATTGCAGGTCACCCTAACAGATATAATAATGAAAAAGTCTGAGA
TGTTGCGAGAATTACCAAAATGTGATGCAGACACGAAATGAGCATGTGCTGTTGGAAAAGTGGAACAGATAGACTTGCTGGAGACAGGGT

>In-frame_UBAP1_ENST00000543944_chr9_34179238_+_NFX1_ENST00000379540_chr9_33338508_+_2743nt
AGACGCCCAAATGAGTGGGGCGGTGAGGGGAAGGAGGAGGGAAGTAGGACTTCAACATGGCGGCTGCGGCACTGGCGGTGGCTACGGTGA
CGGCCTGGCCCGGAGCGGGCAGAGTTGGAGGTGGTGGCGTTCGCTCTCCCTAGGGGCTGTCGGGAGCTCAGCGGGGACCGAGCCTGGGAG
GCCGGCCGGTGCCAGCACCTTTCGGCTTCTGAGACGGCGGCAGCAGCGGCATTCAGATGCTACATTTATGTGTGACAAGCGGTGTAACAA
GAAACGGTTGTGTGGACGGCATAAATGTAATGAGATATGCTGTGTGGATAAGGAGCACAAGTGTCCTTTGATTTGTGGGAGGAAACTCCG
TTGTGGCCTTCATAGGTGTGAAGAACCTTGTCATCGTGGAAACTGCCAGACATGCTGGCAAGCCAGTTTTGATGAATTAACCTGCCATTG
TGGTGCATCAGTGATTTACCCTCCAGTTCCCTGTGGTACTAGGCCCCCTGAATGTACCCAAACCTGCGCTAGAGTCCATGAGTGTGACCA
TCCAGTATATCATTCTTGTCATAGTGAGGAGAAGTGTCCCCCTTGCACTTTCCTAACTCAGAAGTGGTGCATGGGCAAGCATGAGTTTCG
GAGCAACATCCCCTGTCACCTGGTTGATATCTCTTGCGGATTACCCTGCAGTGCCACGCTACCATGTGGGATGCACAAATGTCAGAGACT
CTGTCACAAAGGGGAGTGTCTTGTGGATGAGCCCTGCAAGCAGCCCTGCACCACCCCCAGAGCTGACTGTGGTCACCCGTGTATGGCACC
CTGCCATACCAGCTCACCCTGCCCTGTGACTGCTTGTAAAGCTAAGGTAGAGCTACAGTGTGAATGTGGACGAAGAAAAGAGATGGTGAT
TTGCTCTGAAGCATCTAGTACTTATCAAAGAATAGCTGCAATCTCCATGGCCTCTAAGATAACAGACATGCAGCTTGGAGGTTCAGTGGA
GATCAGCAAGTTAATTACCAAAAAGGAAGTTCATCAAGCCAGGCTGGAGTGTGATGAGGAGTGTTCAGCCTTGGAAAGGAAAAAGAGATT
AGCAGAGGCATTTCATATCAGTGAGGATTCTGATCCTTTCAATATACGTTCTTCAGGGTCAAAATTCAGTGATAGTTTGAAAGAAGATGC
CAGGAAGGACTTAAAGTTTGTCAGTGACGTTGAGAAGGAAATGGAAACCCTCGTGGAGGCCGTGAATAAGGGAAAGAATAGTAAGAAAAG
CCACAGCTTCCCTCCCATGAACAGAGACCACCGCCGGATCATCCATGACTTGGCCCAAGTTTATGGCCTGGAGAGCGTGAGCTATGACAG
TGAACCGAAGCGCAATGTGGTGGTCACTGCCATCAGGGGGAAGTCCGTTTGTCCTCCTACCACGCTGACAGGTGTGCTTGAAAGGGAAAT
GCAGGCACGGCCTCCACCACCGATTCCTCATCACAGACATCAGTCAGACAAGAATCCTGGGAGCAGTAATTTACAGAAAATAACCAAGGA
GCCAATAATTGACTATTTTGACGTCCAGGACTAAGAAGATCATGATGCACTTAGATAAAAGAATGATTAGGTATAGTGGAGACTTATTTG
CCAGCAGATAAATCATGCCCGTTCCCCTCTGCCTGGCAGAATCACAGTCTCACATACTGTCTTGTACTGACACATCCAAAGCATGAGTGT
GTCAGAAATCCCTTGTCTATTCCTGTCTGTATAAAGTGTTTCATTATGACCAGATCTCTGATTGTATGGTCACTAGGTATGCAATCACGC
ATTCAAAGAGGCTCTTTACACCATCACTGTGATTGCTCTGAGAGTTGAGGGACTATTGGGCTTTATTTGGACAAACCAAACTTTTAGCCT
GAAACCAACTTTATGCCACTAAGTCATAGCCTCAGTTGTCCCAGTTATTTGTCCTCCTGAAAATGCCTGAAACATCAGACAGACATTGCT
TGCTTTACCCAAACTGATCAAAATCTTTAGGAGCACAAATGAATTTTTTAGTCTGAAATACCAAATAATGAATTGGTATACCATATCCGG
AATCACACATGTTATCTTAAACCCAGCCATCATACCTAAGTCTTTTGCCAAAACCTCTCATAGGTATATCTAGCTGAACTTATTTTGGCA
TTTTCAATGTGATCAGTTCTAGACCTAGAAGGGGGTCAGGCTGCTTTACAGAATTCTATTTCCTTAAGTCCCTGGCACTTCTCATACCAC
ATCACTGAACCTGTTCAGTAACAATCAGTTTGGCCGTCCCCCATGATGGTAGGAAATATAGAGAGCAAGTTCTTCTGCCAGGGTCACACT
GTGGTCTCTGAACTGACCAGTATATCCCTAACTCCTCTTTGATAGAGAAAGAGTCTCAAATGGACAACTGTCCTGTGTTGCTTTCCCTAG
GCCTTCAGCAGCCTATTGGCTCTCCCTGCCTCTGAGCTCTGGACTCTGTTTGAATATTCCAAGTAGTATATGGACAGTCCAGGGCTTATG
CCCAGCAGCCCACTGGAGGCATTCTTCAGGCTCCTTTAAGGCAGGTGCATTGATAGTTCCATTAGTGTGACCCTTGCATTGGCACCCCTC
CAGCCTGGAGGCCAGGCTTCCAGCAACTTCCTTCTGCCCTAGAGCAAGCCATGAGCCCCAGAGCAGTAGCAGGAGACTTGAGAAGTAGAG

>In-frame_UBAP1_ENST00000543944_chr9_34179238_+_NFX1_ENST00000379521_chr9_33338508_+_1749nt
AGACGCCCAAATGAGTGGGGCGGTGAGGGGAAGGAGGAGGGAAGTAGGACTTCAACATGGCGGCTGCGGCACTGGCGGTGGCTACGGTGA
CGGCCTGGCCCGGAGCGGGCAGAGTTGGAGGTGGTGGCGTTCGCTCTCCCTAGGGGCTGTCGGGAGCTCAGCGGGGACCGAGCCTGGGAG
GCCGGCCGGTGCCAGCACCTTTCGGCTTCTGAGACGGCGGCAGCAGCGGCATTCAGATGCTACATTTATGTGTGACAAGCGGTGTAACAA
GAAACGGTTGTGTGGACGGCATAAATGTAATGAGATATGCTGTGTGGATAAGGAGCACAAGTGTCCTTTGATTTGTGGGAGGAAACTCCG
TTGTGGCCTTCATAGGTGTGAAGAACCTTGTCATCGTGGAAACTGCCAGACATGCTGGCAAGCCAGTTTTGATGAATTAACCTGCCATTG
TGGTGCATCAGTGATTTACCCTCCAGTTCCCTGTGGTACTAGGCCCCCTGAATGTACCCAAACCTGCGCTAGAGTCCATGAGTGTGACCA
TCCAGTATATCATTCTTGTCATAGTGAGGAGAAGTGTCCCCCTTGCACTTTCCTAACTCAGAAGTGGTGCATGGGCAAGCATGAGTTTCG
GAGCAACATCCCCTGTCACCTGGTTGATATCTCTTGCGGATTACCCTGCAGTGCCACGCTACCATGTGGGATGCACAAATGTCAGAGACT
CTGTCACAAAGGGGAGTGTCTTGTGGATGAGCCCTGCAAGCAGCCCTGCACCACCCCCAGAGCTGACTGTGGTCACCCGTGTATGGCACC
CTGCCATACCAGCTCACCCTGCCCTGTGACTGCTTGTAAAGCTAAGGTAGAGCTACAGTGTGAATGTGGACGAAGAAAAGAGATGGTGAT
TTGCTCTGAAGCATCTAGTACTTATCAAAGAATAGCTGCAATCTCCATGGCCTCTAAGATAACAGACATGCAGCTTGGAGGTTCAGTGGA
GATCAGCAAGTTAATTACCAAAAAGGAAGTTCATCAAGCCAGGCTGGAGTGTGATGAGGAGTGTTCAGCCTTGGAAAGGAAAAAGAGATT
AGCAGAGGCATTTCATATCAGTGAGGATTCTGATCCTTTCAATATACGTTCTTCAGGGTCAAAATTCAGTGATAGTTTGAAAGAAGATGC
CAGGAAGGACTTAAAGTTTGTCAGTGACGTTGAGAAGGAAATGGAAACCCTCGTGGAGGCCGTGAATAAGGTTGAAGTCGAAACATCCCA
CTGGACATTTCTCTAAGGCCAGCTTGATGAAAAAAAAAAAGCAATCAAGTCCTGGAAACACTTTCAACCTAGAGTAGTTGTAGGAAAAAG
TCACAACTTCTTTGAGGATCCTTATCTTTCTCAAAACACAGCCATTATAACATCTGTGGAAGCCTGTCCTGGTTCAGGACAGTTGACTGC
AGAAAAGATCTACAGTCGGCTGGGCACAGTGTCTCATGCCTGTAATGCCAGCACTTTGGGAGGCCAAGGCAGGCAGATCACTTGAGGTCA
GGAGTTCTAGATCAGCTTGGCCAACATGACGAAACCCTGTCTCTACTAAAAATATAAAAATTAGCTGGGTGTGGTGGCGGGCACCTGTTA
TTCCAGCTACTTGCAAGGCTTAGGCAGGAGAATTCCTTGAACCCGGGAGGCAGAGGTTGCTGTGAGCTGAGATTCTGCCACTGCACTCCA

>In-frame_UBAP1_ENST00000543944_chr9_34179238_+_NFX1_ENST00000318524_chr9_33338508_+_1686nt
AGACGCCCAAATGAGTGGGGCGGTGAGGGGAAGGAGGAGGGAAGTAGGACTTCAACATGGCGGCTGCGGCACTGGCGGTGGCTACGGTGA
CGGCCTGGCCCGGAGCGGGCAGAGTTGGAGGTGGTGGCGTTCGCTCTCCCTAGGGGCTGTCGGGAGCTCAGCGGGGACCGAGCCTGGGAG
GCCGGCCGGTGCCAGCACCTTTCGGCTTCTGAGACGGCGGCAGCAGCGGCATTCAGATGCTACATTTATGTGTGACAAGCGGTGTAACAA
GAAACGGTTGTGTGGACGGCATAAATGTAATGAGATATGCTGTGTGGATAAGGAGCACAAGTGTCCTTTGATTTGTGGGAGGAAACTCCG
TTGTGGCCTTCATAGGTGTGAAGAACCTTGTCATCGTGGAAACTGCCAGACATGCTGGCAAGCCAGTTTTGATGAATTAACCTGCCATTG
TGGTGCATCAGTGATTTACCCTCCAGTTCCCTGTGGTACTAGGCCCCCTGAATGTACCCAAACCTGCGCTAGAGTCCATGAGTGTGACCA
TCCAGTATATCATTCTTGTCATAGTGAGGAGAAGTGTCCCCCTTGCACTTTCCTAACTCAGAAGTGGTGCATGGGCAAGCATGAGCAGTC
CCACTACTGGGCGTCTACCCAGAAGAAAAGAAGTCATTATATGAAAAAGATACCTGCACACGCATGTTTATAGCAGCACAATTCACAATT
GCAAAAATGTGGAACCAGCCCAACTGCCCATCAGTCAACAAGTGGATAAAGAAATTGTGGTGTATCTATACGTACCATGGAATACTACTC
AGCCAGGAACGAAATAATGGCATTCACAGCAACCTGGATGGATTTGGAGACCATTATTCTAAGTGAAGTAACTCAGGAATGGAAAACCAA
ACATCGTATGTTCTCAATTATAAGAGGGAGCTAAGCTATGAGGACGCAAAGGCATGAGAATGATACAATGGACTTTGGGGACTCTGGGGA
AAGGACGGGAGGCGGGTGAGGGATAAAAAACTACACACTGGGTCCGAGCACGGTGGCTCATGCCTATAATCCCAGCACTTTGGGAGGCCA
AGGCAGGTAGATTATGAGGTCGGGAGTTCGAAACCAGCCTGGCCAACAAGGTGAGACCCCCCCCATCTCTACTAAAATAATTAGCCGGGC
CTGGTGGCGCATCCCTGTAATCCCAGCTACTTTACTTGGGAGGCTGAGGCAGGAGAATTGCTTGAACTCGGGAGGCGGATGTTGCAGTGA
GCCAATATCGCACCACTGCACTCCAGCCTGGGCAACAGAGCAAGACTCCGTCTCGAAAAAAAAAATAAATTTTAAAAACTACACATTGGG
TACAATGTACACTCCTCGGGTGATGGGTGCACCAAAATCTCAAAAATCACTACTAAGGAACTTATCCATGTAACCAAACACCACCTGTTC
CCCAAGAACTATTGAAATAAGAAAAAAGAAAAAAAAAAAATCACTGATTGCAGGTCACCCTAACAGATATAATAATGAAAAAGTCTGAGA
TGTTGCGAGAATTACCAAAATGTGATGCAGACACGAAATGAGCATGTGCTGTTGGAAAAGTGGAACAGATAGACTTGCTGGAGACAGGGT


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FusionGenePPI for UBAP1_NFX1


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
UBAP1TSG101, VPS28, VPS37A, UBC, UBAP1, ACTA2, KIAA1468, CDC37L1, PPIC, ENO1, SHMT2, MOV10, NXF1, MAP3K1, PTPN23, XPO1, ITGA5, C10orf76, VPS37B, TRIM25NFX1UBE2N, MAML3, SIN3A, USP9X, PABPC1, EEF1A2, MATR3, PABPC3, HSPA1A, HNRNPM, HNRNPU, RPL13, SRSF4, HIST1H2AE, RPL7A, FAM208B, LARP1, DDX5, DMD, NCL, RPL13A, RPL17, RPL22, RPL3, RPL6, HNRNPA2B1, HNRNPH1, RPS19, RPS3A, SRSF3, APC2, YBX1, HIST1H4E, HECW2, SHMT2, MOV10, NXF1, BMI1, XPO1, FAM46A, APBA3, ZNF263, UBC


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for UBAP1_NFX1


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for UBAP1_NFX1


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource