|
||||||
|
 | |
| |
| |
| |
| |
|
Fusion gene ID: 39663 |
FusionGeneSummary for TRPC4AP_RALY |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: TRPC4AP_RALY | Fusion gene ID: 39663 | Hgene | Tgene | Gene symbol | TRPC4AP | RALY | Gene ID | 26133 | 22913 |
| Gene name | transient receptor potential cation channel subfamily C member 4 associated protein | RALY heterogeneous nuclear ribonucleoprotein | |
| Synonyms | C20orf188|PPP1R158|TRRP4AP|TRUSS | HNRPCL2|P542 | |
| Cytomap | 20q11.22 | 20q11.22 | |
| Type of gene | protein-coding | protein-coding | |
| Description | short transient receptor potential channel 4-associated proteinTNF-receptor ubiquitous scaffolding/signaling proteinTRP4-associated proteinprotein phosphatase 1, regulatory subunit 158trpc4-associated proteintumor necrosis factor receptor-associated | RNA-binding protein RalyRNA binding protein, autoantigenic (hnRNP-associated with lethal yellow homolog)RNA-binding protein (autoantigenic)RNA-binding protein (autoantigenic, hnRNP-associated with lethal yellow)autoantigen p542heterogeneous nuclear r | |
| Modification date | 20180519 | 20180523 | |
| UniProtAcc | Q8TEL6 | Q9UKM9 | |
| Ensembl transtripts involved in fusion gene | ENST00000451813, ENST00000252015, ENST00000539834, ENST00000432634, | ENST00000375114, ENST00000246194, ENST00000493399, | |
| Fusion gene scores | * DoF score | 12 X 7 X 8=672 | 15 X 7 X 8=840 |
| # samples | 12 | 20 | |
| ** MAII score | log2(12/672*10)=-2.48542682717024 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(20/840*10)=-2.0703893278914 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: TRPC4AP [Title/Abstract] AND RALY [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | TRPC4AP | GO:0006511 | ubiquitin-dependent protein catabolic process | 20551172 |
| Hgene | TRPC4AP | GO:0016567 | protein ubiquitination | 20551172 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | RV | BRCA | TCGA-LL-A441-01A | TRPC4AP | chr20 | 33622926 | - | RALY | chr20 | 32619328 | + |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| 5CDS-5UTR | ENST00000451813 | ENST00000375114 | TRPC4AP | chr20 | 33622926 | - | RALY | chr20 | 32619328 | + |
| 5CDS-5UTR | ENST00000451813 | ENST00000246194 | TRPC4AP | chr20 | 33622926 | - | RALY | chr20 | 32619328 | + |
| 5CDS-intron | ENST00000451813 | ENST00000493399 | TRPC4AP | chr20 | 33622926 | - | RALY | chr20 | 32619328 | + |
| 5CDS-5UTR | ENST00000252015 | ENST00000375114 | TRPC4AP | chr20 | 33622926 | - | RALY | chr20 | 32619328 | + |
| 5CDS-5UTR | ENST00000252015 | ENST00000246194 | TRPC4AP | chr20 | 33622926 | - | RALY | chr20 | 32619328 | + |
| 5CDS-intron | ENST00000252015 | ENST00000493399 | TRPC4AP | chr20 | 33622926 | - | RALY | chr20 | 32619328 | + |
| 5CDS-5UTR | ENST00000539834 | ENST00000375114 | TRPC4AP | chr20 | 33622926 | - | RALY | chr20 | 32619328 | + |
| 5CDS-5UTR | ENST00000539834 | ENST00000246194 | TRPC4AP | chr20 | 33622926 | - | RALY | chr20 | 32619328 | + |
| 5CDS-intron | ENST00000539834 | ENST00000493399 | TRPC4AP | chr20 | 33622926 | - | RALY | chr20 | 32619328 | + |
| 5CDS-5UTR | ENST00000432634 | ENST00000375114 | TRPC4AP | chr20 | 33622926 | - | RALY | chr20 | 32619328 | + |
| 5CDS-5UTR | ENST00000432634 | ENST00000246194 | TRPC4AP | chr20 | 33622926 | - | RALY | chr20 | 32619328 | + |
| 5CDS-intron | ENST00000432634 | ENST00000493399 | TRPC4AP | chr20 | 33622926 | - | RALY | chr20 | 32619328 | + |
Top |
FusionProtFeatures for TRPC4AP_RALY |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| TRPC4AP | RALY |
| Substrate-specific adapter of a DCX (DDB1-CUL4-X-box) E3ubiquitin-protein ligase complex required for cell cycle control.The DCX(TRUSS) complex specifically mediates thepolyubiquitination and subsequent degradation of MYC. Alsoparticipates in the activation of NFKB1 in response to ligation ofTNFRSF1A, possibly by linking TNFRSF1A to the IKK signalosome.Involved in JNK activation via its interaction with TRAF2. Alsoinvolved in elevation of endoplasmic reticulum Ca(2+) storagereduction in response to CHRM1. {ECO:0000269|PubMed:20551172}. | RNA-binding protein that acts as a transcriptionalcofactor for cholesterol biosynthetic genes in the liver. Bindsthe lipid-responsive non-coding RNA LeXis and is required forLeXis-mediated effect on cholesterogenesis (By similarity). May bea heterogeneous nuclear ribonucleoprotein (hnRNP)(PubMed:9376072). {ECO:0000250|UniProtKB:Q64012,ECO:0000269|PubMed:9376072}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Top |
FusionGeneSequence for TRPC4AP_RALY |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
Top |
FusionGenePPI for TRPC4AP_RALY |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| TRPC4AP | TNFRSF1A, TRADD, IKBKB, IKBKG, CHUK, TRAF2, RIPK1, DDB1, CUL4A, MYC, DDA1, RBX1, TAB1, COPS5, CHMP4C, TRPC1, TRPC4, TRPC5, PRG2, SKP2, SRPR, MYH7B, SMCHD1, CCDC6, CUL4B, NCOA1, C4orf26, HERC1, RBBP6, SCAF11, EPB41L5, RNMT, KLC1, SULF2, KDM4D, UNKL, MPZL1, IQGAP1, VWA9, PRRC2C, SETD2, PRRC2A, NOS1AP, SEC23IP, TRIM32, TRIM25 | RALY | SPG7, WDR62, USP45, TADA2A, YWHAQ, CAND1, PCBP1, RBMX, PABPC1, HNRNPM, HNRNPU, HNRNPH1, SYNCRIP, HNRNPR, SNRNP40, HNRNPC, RBM39, RNPS1, DHX9, HNRNPA0, MED16, HSP90AB2P, HNRNPD, MED1, ERLIN1, RPS20, FMNL1, FN1, VCAM1, HNRNPK, QKI, KHDRBS1, CELF1, SOX2, TARDBP, PARK2, RPA3, RPA2, RPA1, LIN28A, LIN28B, SHMT2, MOV10, NXF1, PHF6, CUL7, OBSL1, EZH2, SUZ12, EED, RNF2, BMI1, PSME3, RPL6, RALYL, HNRNPA1, ILF2, NTRK1, HNRNPUL2, PRPF8, RANGAP1, RANBP2, SPICE1, HIST1H3E, MATR3, TEAD2, FOXA3, FOXB1, FOXD4, FOXE1, FOXL1, FOXP3, FOXS1, SNW1, CDC5L, U2AF2, ELAVL2, STRBP, APOBEC3D, C11orf57, ZC3H18, STAU1, DGCR8, FBXW11, ZFC3H1, SNRNP70, SNIP1, RPL7, COX15, HSD17B10, FOXA1, TRIM25, BRCA1, LMNA |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Top |
RelatedDrugs for TRPC4AP_RALY |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
RelatedDiseases for TRPC4AP_RALY |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Tgene | RALY | C0236733 | Amphetamine-Related Disorders | 1 | CTD_human |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
|