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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 3956

FusionGeneSummary for BCAS3_NFS1

check button Fusion gene summary
Fusion gene informationFusion gene name: BCAS3_NFS1
Fusion gene ID: 3956
HgeneTgene
Gene symbol

BCAS3

NFS1

Gene ID

54828

9054

Gene nameBCAS3, microtubule associated cell migration factorNFS1, cysteine desulfurase
SynonymsGAOB1|MAABHUSSY-08|IscS|NIFS
Cytomap

17q23.2

20q11.22

Type of geneprotein-codingprotein-coding
Descriptionbreast carcinoma-amplified sequence 3BCAS4/BCAS3 fusionRudhirabreast carcinoma amplified sequence 4/3 fusion proteinmetastasis associated antigen of breast cancerprotein Maab1cysteine desulfurase, mitochondrialNFS1 nitrogen fixation 1 homolognitrogen fixation 1 (S. cerevisiae, homolog)nitrogen-fixing bacteria S-like protein
Modification date2018052320180519
UniProtAcc

Q9H6U6

Q9Y697

Ensembl transtripts involved in fusion geneENST00000589222, ENST00000407086, 
ENST00000390652, ENST00000408905, 
ENST00000588462, ENST00000585744, 
ENST00000588874, ENST00000585812, 
ENST00000374092, ENST00000374085, 
ENST00000498084, ENST00000397425, 
ENST00000540053, ENST00000541387, 
ENST00000306750, 
Fusion gene scores* DoF score40 X 23 X 15=138002 X 2 X 2=8
# samples 472
** MAII scorelog2(47/13800*10)=-4.87586369998789
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(2/8*10)=1.32192809488736
Context

PubMed: BCAS3 [Title/Abstract] AND NFS1 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneBCAS3

GO:0043085

positive regulation of catalytic activity

17505058

HgeneBCAS3

GO:0045944

positive regulation of transcription by RNA polymerase II

17505058

HgeneBCAS3

GO:0071391

cellular response to estrogen stimulus

17505058

TgeneNFS1

GO:0018283

iron incorporation into metallo-sulfur cluster

16847322


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGARVBRCATCGA-A1-A0SJ-01ABCAS3chr17

59112151

+NFS1chr20

34262539

-
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
Frame-shitENST00000589222ENST00000374092BCAS3chr17

59112151

+NFS1chr20

34262539

-
Frame-shitENST00000589222ENST00000374085BCAS3chr17

59112151

+NFS1chr20

34262539

-
5CDS-intronENST00000589222ENST00000498084BCAS3chr17

59112151

+NFS1chr20

34262539

-
5CDS-intronENST00000589222ENST00000397425BCAS3chr17

59112151

+NFS1chr20

34262539

-
5CDS-intronENST00000589222ENST00000540053BCAS3chr17

59112151

+NFS1chr20

34262539

-
5CDS-intronENST00000589222ENST00000541387BCAS3chr17

59112151

+NFS1chr20

34262539

-
5CDS-intronENST00000589222ENST00000306750BCAS3chr17

59112151

+NFS1chr20

34262539

-
Frame-shitENST00000407086ENST00000374092BCAS3chr17

59112151

+NFS1chr20

34262539

-
Frame-shitENST00000407086ENST00000374085BCAS3chr17

59112151

+NFS1chr20

34262539

-
5CDS-intronENST00000407086ENST00000498084BCAS3chr17

59112151

+NFS1chr20

34262539

-
5CDS-intronENST00000407086ENST00000397425BCAS3chr17

59112151

+NFS1chr20

34262539

-
5CDS-intronENST00000407086ENST00000540053BCAS3chr17

59112151

+NFS1chr20

34262539

-
5CDS-intronENST00000407086ENST00000541387BCAS3chr17

59112151

+NFS1chr20

34262539

-
5CDS-intronENST00000407086ENST00000306750BCAS3chr17

59112151

+NFS1chr20

34262539

-
Frame-shitENST00000390652ENST00000374092BCAS3chr17

59112151

+NFS1chr20

34262539

-
Frame-shitENST00000390652ENST00000374085BCAS3chr17

59112151

+NFS1chr20

34262539

-
5CDS-intronENST00000390652ENST00000498084BCAS3chr17

59112151

+NFS1chr20

34262539

-
5CDS-intronENST00000390652ENST00000397425BCAS3chr17

59112151

+NFS1chr20

34262539

-
5CDS-intronENST00000390652ENST00000540053BCAS3chr17

59112151

+NFS1chr20

34262539

-
5CDS-intronENST00000390652ENST00000541387BCAS3chr17

59112151

+NFS1chr20

34262539

-
5CDS-intronENST00000390652ENST00000306750BCAS3chr17

59112151

+NFS1chr20

34262539

-
Frame-shitENST00000408905ENST00000374092BCAS3chr17

59112151

+NFS1chr20

34262539

-
Frame-shitENST00000408905ENST00000374085BCAS3chr17

59112151

+NFS1chr20

34262539

-
5CDS-intronENST00000408905ENST00000498084BCAS3chr17

59112151

+NFS1chr20

34262539

-
5CDS-intronENST00000408905ENST00000397425BCAS3chr17

59112151

+NFS1chr20

34262539

-
5CDS-intronENST00000408905ENST00000540053BCAS3chr17

59112151

+NFS1chr20

34262539

-
5CDS-intronENST00000408905ENST00000541387BCAS3chr17

59112151

+NFS1chr20

34262539

-
5CDS-intronENST00000408905ENST00000306750BCAS3chr17

59112151

+NFS1chr20

34262539

-
Frame-shitENST00000588462ENST00000374092BCAS3chr17

59112151

+NFS1chr20

34262539

-
Frame-shitENST00000588462ENST00000374085BCAS3chr17

59112151

+NFS1chr20

34262539

-
5CDS-intronENST00000588462ENST00000498084BCAS3chr17

59112151

+NFS1chr20

34262539

-
5CDS-intronENST00000588462ENST00000397425BCAS3chr17

59112151

+NFS1chr20

34262539

-
5CDS-intronENST00000588462ENST00000540053BCAS3chr17

59112151

+NFS1chr20

34262539

-
5CDS-intronENST00000588462ENST00000541387BCAS3chr17

59112151

+NFS1chr20

34262539

-
5CDS-intronENST00000588462ENST00000306750BCAS3chr17

59112151

+NFS1chr20

34262539

-
Frame-shitENST00000585744ENST00000374092BCAS3chr17

59112151

+NFS1chr20

34262539

-
Frame-shitENST00000585744ENST00000374085BCAS3chr17

59112151

+NFS1chr20

34262539

-
5CDS-intronENST00000585744ENST00000498084BCAS3chr17

59112151

+NFS1chr20

34262539

-
5CDS-intronENST00000585744ENST00000397425BCAS3chr17

59112151

+NFS1chr20

34262539

-
5CDS-intronENST00000585744ENST00000540053BCAS3chr17

59112151

+NFS1chr20

34262539

-
5CDS-intronENST00000585744ENST00000541387BCAS3chr17

59112151

+NFS1chr20

34262539

-
5CDS-intronENST00000585744ENST00000306750BCAS3chr17

59112151

+NFS1chr20

34262539

-
Frame-shitENST00000588874ENST00000374092BCAS3chr17

59112151

+NFS1chr20

34262539

-
Frame-shitENST00000588874ENST00000374085BCAS3chr17

59112151

+NFS1chr20

34262539

-
5CDS-intronENST00000588874ENST00000498084BCAS3chr17

59112151

+NFS1chr20

34262539

-
5CDS-intronENST00000588874ENST00000397425BCAS3chr17

59112151

+NFS1chr20

34262539

-
5CDS-intronENST00000588874ENST00000540053BCAS3chr17

59112151

+NFS1chr20

34262539

-
5CDS-intronENST00000588874ENST00000541387BCAS3chr17

59112151

+NFS1chr20

34262539

-
5CDS-intronENST00000588874ENST00000306750BCAS3chr17

59112151

+NFS1chr20

34262539

-
intron-3CDSENST00000585812ENST00000374092BCAS3chr17

59112151

+NFS1chr20

34262539

-
intron-3CDSENST00000585812ENST00000374085BCAS3chr17

59112151

+NFS1chr20

34262539

-
intron-intronENST00000585812ENST00000498084BCAS3chr17

59112151

+NFS1chr20

34262539

-
intron-intronENST00000585812ENST00000397425BCAS3chr17

59112151

+NFS1chr20

34262539

-
intron-intronENST00000585812ENST00000540053BCAS3chr17

59112151

+NFS1chr20

34262539

-
intron-intronENST00000585812ENST00000541387BCAS3chr17

59112151

+NFS1chr20

34262539

-
intron-intronENST00000585812ENST00000306750BCAS3chr17

59112151

+NFS1chr20

34262539

-

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FusionProtFeatures for BCAS3_NFS1


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
BCAS3

Q9H6U6

NFS1

Q9Y697

Catalyzes the removal of elemental sulfur from cysteineto produce alanine. It supplies the inorganic sulfur for iron-sulfur (Fe-S) clusters. May be involved in the biosynthesis ofmolybdenum cofactor. {ECO:0000269|PubMed:18650437}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for BCAS3_NFS1


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for BCAS3_NFS1


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
BCAS3CTBP1, CTBP2, CDC23, C16orf70, ZDHHC17, ESR1, PELP1, HIST1H3A, KAT2B, WIPI2, ATM, BAG4, CCND1, FBXW7, KRAS, PALB2, PHB, PTPN1, SMAD4, STK11, TGFB1, TSG101, XRCC3, OFD1, CEP128, FBF1, NPHP1, SCLT1, XPO1, CD14, HDAC1, IRF3, MAGEE1, IL17RA, DOCK5, VWA5A, RAB2BNFS1HDAC5, MRRF, ZWINT, DLD, HLA-DPB1, NDUFAB1, CDNF, PICK1, ISCU, ABCC1, ACADM, LYRM4, PPP2R1A, PSMC2, SUCLA2, SOD1, CTR9, TACC3, BCOR, NDUFA4, COQ3, COQ9, C15orf48, C17orf89, OXCT2, GPX7, KLHL22, ACAD9, IKZF1, N6AMT2, PCGF2, HSPA8, BPNT1, OXT, DYNC1LI1


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for BCAS3_NFS1


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status
TgeneNFS1Q9Y697DB00114Pyridoxal PhosphateCysteine desulfurase, mitochondrialsmall moleculeapproved|investigational|nutraceutical

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RelatedDiseases for BCAS3_NFS1


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource