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Fusion gene ID: 39490 |
FusionGeneSummary for TRIM27_PTPRR |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: TRIM27_PTPRR | Fusion gene ID: 39490 | Hgene | Tgene | Gene symbol | TRIM27 | PTPRR | Gene ID | 5987 | 5801 |
| Gene name | tripartite motif containing 27 | protein tyrosine phosphatase, receptor type R | |
| Synonyms | RFP|RNF76 | EC-PTP|PCPTP1|PTP-SL|PTPBR7|PTPRQ | |
| Cytomap | 6p22.1 | 12q15 | |
| Type of gene | protein-coding | protein-coding | |
| Description | zinc finger protein RFPRFP transforming proteinRING finger protein 76RING-type E3 ubiquitin transferase TRIM27ret finger proteintripartite motif protein TRIM27tripartite motif-containing protein 27 | receptor-type tyrosine-protein phosphatase RCh-1 PTPaseNC-PTPCOM1R-PTP-Rch-1PTPaseprotein tyrosine phosphatase Cr1PTPaseprotein-tyrosine phosphatase NC-PTPCOM1protein-tyrosine phosphatase PCPTP1 | |
| Modification date | 20180522 | 20180519 | |
| UniProtAcc | P14373 | Q15256 | |
| Ensembl transtripts involved in fusion gene | ENST00000377194, ENST00000377199, ENST00000498117, ENST00000459807, ENST00000412687, ENST00000437160, ENST00000427689, ENST00000435528, ENST00000485666, ENST00000468364, ENST00000455861, ENST00000417660, ENST00000400720, ENST00000495323, ENST00000491158, ENST00000437415, ENST00000468047, ENST00000431123, ENST00000452265, | ENST00000283228, ENST00000440835, ENST00000537619, ENST00000378778, ENST00000342084, ENST00000549308, | |
| Fusion gene scores | * DoF score | 3 X 4 X 3=36 | 33 X 13 X 10=4290 |
| # samples | 4 | 31 | |
| ** MAII score | log2(4/36*10)=0.15200309344505 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(31/4290*10)=-3.79063752711267 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: TRIM27 [Title/Abstract] AND PTPRR [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | Oncogene involved fusion gene, in-frame and retained their domain. | ||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | TRIM27 | GO:0000122 | negative regulation of transcription by RNA polymerase II | 10976108 |
| Hgene | TRIM27 | GO:0006469 | negative regulation of protein kinase activity | 22128329 |
| Hgene | TRIM27 | GO:0032897 | negative regulation of viral transcription | 18248090 |
| Hgene | TRIM27 | GO:0034314 | Arp2/3 complex-mediated actin nucleation | 23452853 |
| Hgene | TRIM27 | GO:0042147 | retrograde transport, endosome to Golgi | 23452853 |
| Hgene | TRIM27 | GO:0045087 | innate immune response | 18248090 |
| Hgene | TRIM27 | GO:0045814 | negative regulation of gene expression, epigenetic | 10976108 |
| Hgene | TRIM27 | GO:0051091 | positive regulation of DNA binding transcription factor activity | 23077300 |
| Hgene | TRIM27 | GO:0070206 | protein trimerization | 17156811 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | RV | SARC | TCGA-DX-A23Z-01A | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| In-frame | ENST00000377194 | ENST00000283228 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| In-frame | ENST00000377194 | ENST00000440835 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| 5CDS-5UTR | ENST00000377194 | ENST00000537619 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| 5CDS-5UTR | ENST00000377194 | ENST00000378778 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| 5CDS-5UTR | ENST00000377194 | ENST00000342084 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| 5CDS-5UTR | ENST00000377194 | ENST00000549308 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| In-frame | ENST00000377199 | ENST00000283228 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| In-frame | ENST00000377199 | ENST00000440835 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| 5CDS-5UTR | ENST00000377199 | ENST00000537619 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| 5CDS-5UTR | ENST00000377199 | ENST00000378778 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| 5CDS-5UTR | ENST00000377199 | ENST00000342084 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| 5CDS-5UTR | ENST00000377199 | ENST00000549308 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-3CDS | ENST00000498117 | ENST00000283228 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-3CDS | ENST00000498117 | ENST00000440835 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000498117 | ENST00000537619 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000498117 | ENST00000378778 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000498117 | ENST00000342084 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000498117 | ENST00000549308 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-3CDS | ENST00000459807 | ENST00000283228 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-3CDS | ENST00000459807 | ENST00000440835 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000459807 | ENST00000537619 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000459807 | ENST00000378778 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000459807 | ENST00000342084 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000459807 | ENST00000549308 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-3CDS | ENST00000412687 | ENST00000283228 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-3CDS | ENST00000412687 | ENST00000440835 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000412687 | ENST00000537619 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000412687 | ENST00000378778 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000412687 | ENST00000342084 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000412687 | ENST00000549308 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-3CDS | ENST00000437160 | ENST00000283228 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-3CDS | ENST00000437160 | ENST00000440835 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000437160 | ENST00000537619 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000437160 | ENST00000378778 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000437160 | ENST00000342084 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000437160 | ENST00000549308 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-3CDS | ENST00000427689 | ENST00000283228 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-3CDS | ENST00000427689 | ENST00000440835 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000427689 | ENST00000537619 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000427689 | ENST00000378778 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000427689 | ENST00000342084 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000427689 | ENST00000549308 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-3CDS | ENST00000435528 | ENST00000283228 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-3CDS | ENST00000435528 | ENST00000440835 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000435528 | ENST00000537619 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000435528 | ENST00000378778 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000435528 | ENST00000342084 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000435528 | ENST00000549308 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-3CDS | ENST00000485666 | ENST00000283228 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-3CDS | ENST00000485666 | ENST00000440835 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000485666 | ENST00000537619 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000485666 | ENST00000378778 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000485666 | ENST00000342084 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000485666 | ENST00000549308 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-3CDS | ENST00000468364 | ENST00000283228 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-3CDS | ENST00000468364 | ENST00000440835 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000468364 | ENST00000537619 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000468364 | ENST00000378778 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000468364 | ENST00000342084 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000468364 | ENST00000549308 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-3CDS | ENST00000455861 | ENST00000283228 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-3CDS | ENST00000455861 | ENST00000440835 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000455861 | ENST00000537619 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000455861 | ENST00000378778 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000455861 | ENST00000342084 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000455861 | ENST00000549308 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-3CDS | ENST00000417660 | ENST00000283228 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-3CDS | ENST00000417660 | ENST00000440835 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000417660 | ENST00000537619 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000417660 | ENST00000378778 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000417660 | ENST00000342084 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000417660 | ENST00000549308 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-3CDS | ENST00000400720 | ENST00000283228 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-3CDS | ENST00000400720 | ENST00000440835 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000400720 | ENST00000537619 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000400720 | ENST00000378778 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000400720 | ENST00000342084 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000400720 | ENST00000549308 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-3CDS | ENST00000495323 | ENST00000283228 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-3CDS | ENST00000495323 | ENST00000440835 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000495323 | ENST00000537619 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000495323 | ENST00000378778 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000495323 | ENST00000342084 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000495323 | ENST00000549308 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-3CDS | ENST00000491158 | ENST00000283228 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-3CDS | ENST00000491158 | ENST00000440835 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000491158 | ENST00000537619 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000491158 | ENST00000378778 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000491158 | ENST00000342084 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000491158 | ENST00000549308 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-3CDS | ENST00000437415 | ENST00000283228 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-3CDS | ENST00000437415 | ENST00000440835 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000437415 | ENST00000537619 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000437415 | ENST00000378778 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000437415 | ENST00000342084 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000437415 | ENST00000549308 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-3CDS | ENST00000468047 | ENST00000283228 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-3CDS | ENST00000468047 | ENST00000440835 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000468047 | ENST00000537619 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000468047 | ENST00000378778 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000468047 | ENST00000342084 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000468047 | ENST00000549308 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-3CDS | ENST00000431123 | ENST00000283228 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-3CDS | ENST00000431123 | ENST00000440835 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000431123 | ENST00000537619 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000431123 | ENST00000378778 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000431123 | ENST00000342084 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000431123 | ENST00000549308 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-3CDS | ENST00000452265 | ENST00000283228 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-3CDS | ENST00000452265 | ENST00000440835 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000452265 | ENST00000537619 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000452265 | ENST00000378778 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000452265 | ENST00000342084 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
| intron-5UTR | ENST00000452265 | ENST00000549308 | TRIM27 | chr6 | 28879473 | - | PTPRR | chr12 | 71050597 | - |
Top |
FusionProtFeatures for TRIM27_PTPRR |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| TRIM27 | PTPRR |
| E3 ubiquitin-protein ligase that mediates ubiquitinationof PIK3C2B and inhibits its activity; mediates the formation of'Lys-48'-linked polyubiquitin chains; the function inhibits CD4 T-cell activation. Acts as a regulator of retrograde transport:together with MAGEL2, mediates the formation of 'Lys-63'-linkedpolyubiquitin chains at 'Lys-220' of WASHC1, leading to promoteendosomal F-actin assembly (PubMed:23452853). Has atranscriptional repressor activity by cooperating with EPC1.Induces apoptosis by activating Jun N-terminal kinase and p38kinase and also increases caspase-3-like activity independently ofmitochondrial events. May function in male germ cell development.Has DNA-binding activity and preferentially bound to double-stranded DNA. {ECO:0000269|PubMed:10976108,ECO:0000269|PubMed:12807881, ECO:0000269|PubMed:22128329,ECO:0000269|PubMed:23452853}. | Sequesters mitogen-activated protein kinases (MAPKs)such as MAPK1, MAPK3 and MAPK14 in the cytoplasm in an inactiveform. The MAPKs bind to a dephosphorylated kinase interactingmotif, phosphorylation of which by the protein kinase A complexreleases the MAPKs for activation and translocation into thenucleus (By similarity). {ECO:0000250}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | TRIM27 | chr6:28879473 | chr12:71050597 | ENST00000377194 | - | 4 | 9 | 132_172 | 256 | 359 | Coiled coil | Ontology_term=ECO:0000255 |
| Hgene | TRIM27 | chr6:28879473 | chr12:71050597 | ENST00000377199 | - | 4 | 8 | 132_172 | 256 | 514 | Coiled coil | Ontology_term=ECO:0000255 |
| Hgene | TRIM27 | chr6:28879473 | chr12:71050597 | ENST00000377194 | - | 4 | 9 | 16_57 | 256 | 359 | Zinc finger | RING-type |
| Hgene | TRIM27 | chr6:28879473 | chr12:71050597 | ENST00000377194 | - | 4 | 9 | 96_127 | 256 | 359 | Zinc finger | B box-type |
| Hgene | TRIM27 | chr6:28879473 | chr12:71050597 | ENST00000377199 | - | 4 | 8 | 16_57 | 256 | 514 | Zinc finger | RING-type |
| Hgene | TRIM27 | chr6:28879473 | chr12:71050597 | ENST00000377199 | - | 4 | 8 | 96_127 | 256 | 514 | Zinc finger | B box-type |
| Tgene | >PTPRR | chr6:28879473 | chr12:71050597 | ENST00000378778 | - | 8 | 11 | 393_647 | 382 | 452 | Domain | Tyrosine-protein phosphatase |
| Tgene | >PTPRR | chr6:28879473 | chr12:71050597 | ENST00000440835 | - | 7 | 10 | 393_647 | 343 | 413 | Domain | Tyrosine-protein phosphatase |
| Tgene | >PTPRR | chr6:28879473 | chr12:71050597 | ENST00000549308 | - | 8 | 11 | 393_647 | 343 | 413 | Domain | Tyrosine-protein phosphatase |
| Tgene | >PTPRR | chr6:28879473 | chr12:71050597 | ENST00000283228 | - | 11 | 14 | 588_594 | 588 | 658 | Region | Substrate binding |
| Tgene | >PTPRR | chr6:28879473 | chr12:71050597 | ENST00000342084 | - | 10 | 13 | 588_594 | 476 | 546 | Region | Substrate binding |
| Tgene | >PTPRR | chr6:28879473 | chr12:71050597 | ENST00000378778 | - | 8 | 11 | 588_594 | 382 | 452 | Region | Substrate binding |
| Tgene | >PTPRR | chr6:28879473 | chr12:71050597 | ENST00000440835 | - | 7 | 10 | 588_594 | 343 | 413 | Region | Substrate binding |
| Tgene | >PTPRR | chr6:28879473 | chr12:71050597 | ENST00000549308 | - | 8 | 11 | 588_594 | 343 | 413 | Region | Substrate binding |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | >TRIM27 | chr6:28879473 | chr12:71050597 | ENST00000377194 | - | 4 | 9 | 282_311 | 256 | 359 | Coiled coil | Ontology_term=ECO:0000255 |
| Hgene | >TRIM27 | chr6:28879473 | chr12:71050597 | ENST00000377199 | - | 4 | 8 | 282_311 | 256 | 514 | Coiled coil | Ontology_term=ECO:0000255 |
| Hgene | >TRIM27 | chr6:28879473 | chr12:71050597 | ENST00000400720 | - | 1 | 8 | 132_172 | -119 | 514 | Coiled coil | Ontology_term=ECO:0000255 |
| Hgene | >TRIM27 | chr6:28879473 | chr12:71050597 | ENST00000400720 | - | 1 | 8 | 282_311 | -119 | 514 | Coiled coil | Ontology_term=ECO:0000255 |
| Hgene | >TRIM27 | chr6:28879473 | chr12:71050597 | ENST00000412687 | - | 1 | 9 | 132_172 | -119 | 359 | Coiled coil | Ontology_term=ECO:0000255 |
| Hgene | >TRIM27 | chr6:28879473 | chr12:71050597 | ENST00000412687 | - | 1 | 9 | 282_311 | -119 | 359 | Coiled coil | Ontology_term=ECO:0000255 |
| Hgene | >TRIM27 | chr6:28879473 | chr12:71050597 | ENST00000417660 | - | 1 | 9 | 132_172 | -119 | 359 | Coiled coil | Ontology_term=ECO:0000255 |
| Hgene | >TRIM27 | chr6:28879473 | chr12:71050597 | ENST00000417660 | - | 1 | 9 | 282_311 | -119 | 359 | Coiled coil | Ontology_term=ECO:0000255 |
| Hgene | >TRIM27 | chr6:28879473 | chr12:71050597 | ENST00000427689 | - | 1 | 9 | 132_172 | -119 | 359 | Coiled coil | Ontology_term=ECO:0000255 |
| Hgene | >TRIM27 | chr6:28879473 | chr12:71050597 | ENST00000427689 | - | 1 | 9 | 282_311 | -119 | 359 | Coiled coil | Ontology_term=ECO:0000255 |
| Hgene | >TRIM27 | chr6:28879473 | chr12:71050597 | ENST00000431123 | - | 1 | 8 | 132_172 | -97 | 514 | Coiled coil | Ontology_term=ECO:0000255 |
| Hgene | >TRIM27 | chr6:28879473 | chr12:71050597 | ENST00000431123 | - | 1 | 8 | 282_311 | -97 | 514 | Coiled coil | Ontology_term=ECO:0000255 |
| Hgene | >TRIM27 | chr6:28879473 | chr12:71050597 | ENST00000435528 | - | 1 | 8 | 132_172 | -119 | 514 | Coiled coil | Ontology_term=ECO:0000255 |
| Hgene | >TRIM27 | chr6:28879473 | chr12:71050597 | ENST00000435528 | - | 1 | 8 | 282_311 | -119 | 514 | Coiled coil | Ontology_term=ECO:0000255 |
| Hgene | >TRIM27 | chr6:28879473 | chr12:71050597 | ENST00000437160 | - | 1 | 8 | 132_172 | -119 | 514 | Coiled coil | Ontology_term=ECO:0000255 |
| Hgene | >TRIM27 | chr6:28879473 | chr12:71050597 | ENST00000437160 | - | 1 | 8 | 282_311 | -119 | 514 | Coiled coil | Ontology_term=ECO:0000255 |
| Hgene | >TRIM27 | chr6:28879473 | chr12:71050597 | ENST00000452265 | - | 1 | 9 | 132_172 | -119 | 359 | Coiled coil | Ontology_term=ECO:0000255 |
| Hgene | >TRIM27 | chr6:28879473 | chr12:71050597 | ENST00000452265 | - | 1 | 9 | 282_311 | -119 | 359 | Coiled coil | Ontology_term=ECO:0000255 |
| Hgene | >TRIM27 | chr6:28879473 | chr12:71050597 | ENST00000377194 | - | 4 | 9 | 298_492 | 256 | 359 | Domain | B30.2/SPRY |
| Hgene | >TRIM27 | chr6:28879473 | chr12:71050597 | ENST00000377199 | - | 4 | 8 | 298_492 | 256 | 514 | Domain | B30.2/SPRY |
| Hgene | >TRIM27 | chr6:28879473 | chr12:71050597 | ENST00000400720 | - | 1 | 8 | 298_492 | -119 | 514 | Domain | B30.2/SPRY |
| Hgene | >TRIM27 | chr6:28879473 | chr12:71050597 | ENST00000412687 | - | 1 | 9 | 298_492 | -119 | 359 | Domain | B30.2/SPRY |
| Hgene | >TRIM27 | chr6:28879473 | chr12:71050597 | ENST00000417660 | - | 1 | 9 | 298_492 | -119 | 359 | Domain | B30.2/SPRY |
| Hgene | >TRIM27 | chr6:28879473 | chr12:71050597 | ENST00000427689 | - | 1 | 9 | 298_492 | -119 | 359 | Domain | B30.2/SPRY |
| Hgene | >TRIM27 | chr6:28879473 | chr12:71050597 | ENST00000431123 | - | 1 | 8 | 298_492 | -97 | 514 | Domain | B30.2/SPRY |
| Hgene | >TRIM27 | chr6:28879473 | chr12:71050597 | ENST00000435528 | - | 1 | 8 | 298_492 | -119 | 514 | Domain | B30.2/SPRY |
| Hgene | >TRIM27 | chr6:28879473 | chr12:71050597 | ENST00000437160 | - | 1 | 8 | 298_492 | -119 | 514 | Domain | B30.2/SPRY |
| Hgene | >TRIM27 | chr6:28879473 | chr12:71050597 | ENST00000452265 | - | 1 | 9 | 298_492 | -119 | 359 | Domain | B30.2/SPRY |
| Hgene | >TRIM27 | chr6:28879473 | chr12:71050597 | ENST00000400720 | - | 1 | 8 | 16_57 | -119 | 514 | Zinc finger | RING-type |
| Hgene | >TRIM27 | chr6:28879473 | chr12:71050597 | ENST00000400720 | - | 1 | 8 | 96_127 | -119 | 514 | Zinc finger | B box-type |
| Hgene | >TRIM27 | chr6:28879473 | chr12:71050597 | ENST00000412687 | - | 1 | 9 | 16_57 | -119 | 359 | Zinc finger | RING-type |
| Hgene | >TRIM27 | chr6:28879473 | chr12:71050597 | ENST00000412687 | - | 1 | 9 | 96_127 | -119 | 359 | Zinc finger | B box-type |
| Hgene | >TRIM27 | chr6:28879473 | chr12:71050597 | ENST00000417660 | - | 1 | 9 | 16_57 | -119 | 359 | Zinc finger | RING-type |
| Hgene | >TRIM27 | chr6:28879473 | chr12:71050597 | ENST00000417660 | - | 1 | 9 | 96_127 | -119 | 359 | Zinc finger | B box-type |
| Hgene | >TRIM27 | chr6:28879473 | chr12:71050597 | ENST00000427689 | - | 1 | 9 | 16_57 | -119 | 359 | Zinc finger | RING-type |
| Hgene | >TRIM27 | chr6:28879473 | chr12:71050597 | ENST00000427689 | - | 1 | 9 | 96_127 | -119 | 359 | Zinc finger | B box-type |
| Hgene | >TRIM27 | chr6:28879473 | chr12:71050597 | ENST00000431123 | - | 1 | 8 | 16_57 | -97 | 514 | Zinc finger | RING-type |
| Hgene | >TRIM27 | chr6:28879473 | chr12:71050597 | ENST00000431123 | - | 1 | 8 | 96_127 | -97 | 514 | Zinc finger | B box-type |
| Hgene | >TRIM27 | chr6:28879473 | chr12:71050597 | ENST00000435528 | - | 1 | 8 | 16_57 | -119 | 514 | Zinc finger | RING-type |
| Hgene | >TRIM27 | chr6:28879473 | chr12:71050597 | ENST00000435528 | - | 1 | 8 | 96_127 | -119 | 514 | Zinc finger | B box-type |
| Hgene | >TRIM27 | chr6:28879473 | chr12:71050597 | ENST00000437160 | - | 1 | 8 | 16_57 | -119 | 514 | Zinc finger | RING-type |
| Hgene | >TRIM27 | chr6:28879473 | chr12:71050597 | ENST00000437160 | - | 1 | 8 | 96_127 | -119 | 514 | Zinc finger | B box-type |
| Hgene | >TRIM27 | chr6:28879473 | chr12:71050597 | ENST00000452265 | - | 1 | 9 | 16_57 | -119 | 359 | Zinc finger | RING-type |
| Hgene | >TRIM27 | chr6:28879473 | chr12:71050597 | ENST00000452265 | - | 1 | 9 | 96_127 | -119 | 359 | Zinc finger | B box-type |
| Tgene | PTPRR | chr6:28879473 | chr12:71050597 | ENST00000283228 | - | 11 | 14 | 393_647 | 588 | 658 | Domain | Tyrosine-protein phosphatase |
| Tgene | PTPRR | chr6:28879473 | chr12:71050597 | ENST00000342084 | - | 10 | 13 | 393_647 | 476 | 546 | Domain | Tyrosine-protein phosphatase |
| Tgene | PTPRR | chr6:28879473 | chr12:71050597 | ENST00000283228 | - | 11 | 14 | 22_227 | 588 | 658 | Topological domain | Extracellular |
| Tgene | PTPRR | chr6:28879473 | chr12:71050597 | ENST00000283228 | - | 11 | 14 | 249_657 | 588 | 658 | Topological domain | Cytoplasmic |
| Tgene | PTPRR | chr6:28879473 | chr12:71050597 | ENST00000342084 | - | 10 | 13 | 22_227 | 476 | 546 | Topological domain | Extracellular |
| Tgene | PTPRR | chr6:28879473 | chr12:71050597 | ENST00000342084 | - | 10 | 13 | 249_657 | 476 | 546 | Topological domain | Cytoplasmic |
| Tgene | PTPRR | chr6:28879473 | chr12:71050597 | ENST00000378778 | - | 8 | 11 | 22_227 | 382 | 452 | Topological domain | Extracellular |
| Tgene | PTPRR | chr6:28879473 | chr12:71050597 | ENST00000378778 | - | 8 | 11 | 249_657 | 382 | 452 | Topological domain | Cytoplasmic |
| Tgene | PTPRR | chr6:28879473 | chr12:71050597 | ENST00000440835 | - | 7 | 10 | 22_227 | 343 | 413 | Topological domain | Extracellular |
| Tgene | PTPRR | chr6:28879473 | chr12:71050597 | ENST00000440835 | - | 7 | 10 | 249_657 | 343 | 413 | Topological domain | Cytoplasmic |
| Tgene | PTPRR | chr6:28879473 | chr12:71050597 | ENST00000549308 | - | 8 | 11 | 22_227 | 343 | 413 | Topological domain | Extracellular |
| Tgene | PTPRR | chr6:28879473 | chr12:71050597 | ENST00000549308 | - | 8 | 11 | 249_657 | 343 | 413 | Topological domain | Cytoplasmic |
| Tgene | PTPRR | chr6:28879473 | chr12:71050597 | ENST00000283228 | - | 11 | 14 | 228_248 | 588 | 658 | Transmembrane | Helical |
| Tgene | PTPRR | chr6:28879473 | chr12:71050597 | ENST00000342084 | - | 10 | 13 | 228_248 | 476 | 546 | Transmembrane | Helical |
| Tgene | PTPRR | chr6:28879473 | chr12:71050597 | ENST00000378778 | - | 8 | 11 | 228_248 | 382 | 452 | Transmembrane | Helical |
| Tgene | PTPRR | chr6:28879473 | chr12:71050597 | ENST00000440835 | - | 7 | 10 | 228_248 | 343 | 413 | Transmembrane | Helical |
| Tgene | PTPRR | chr6:28879473 | chr12:71050597 | ENST00000549308 | - | 8 | 11 | 228_248 | 343 | 413 | Transmembrane | Helical |
Top |
FusionGeneSequence for TRIM27_PTPRR |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| >In-frame_TRIM27_ENST00000377194_chr6_28879473_-_PTPRR_ENST00000283228_chr12_71050597_-_326aa MASGSVAECLQQETTCPVCLQYFAEPMMLDCGHNICCACLARCWGTAETNVSCPQCRETFPQRHMRPNRHLANVTQLVKQLRTERPSGPG GEMGVCEKHREPLKLYCEEDQMPICVVCDRSREHRGHSVLPLEEAVEGFKEQIQNQLDHLKRVKDLKKRRRAQGEQARAELLSLTQMERE KIVWEFEQLYHSLKEHEYRLLARLEELDLAIYNSINGAITQFSCNISHLSSLIAQLEEKQQQPTRELLQDIGDTLSSAGIGRTGCFIATS >In-frame_TRIM27_ENST00000377194_chr6_28879473_-_PTPRR_ENST00000440835_chr12_71050597_-_326aa MASGSVAECLQQETTCPVCLQYFAEPMMLDCGHNICCACLARCWGTAETNVSCPQCRETFPQRHMRPNRHLANVTQLVKQLRTERPSGPG GEMGVCEKHREPLKLYCEEDQMPICVVCDRSREHRGHSVLPLEEAVEGFKEQIQNQLDHLKRVKDLKKRRRAQGEQARAELLSLTQMERE KIVWEFEQLYHSLKEHEYRLLARLEELDLAIYNSINGAITQFSCNISHLSSLIAQLEEKQQQPTRELLQDIGDTLSSAGIGRTGCFIATS >In-frame_TRIM27_ENST00000377199_chr6_28879473_-_PTPRR_ENST00000283228_chr12_71050597_-_326aa MASGSVAECLQQETTCPVCLQYFAEPMMLDCGHNICCACLARCWGTAETNVSCPQCRETFPQRHMRPNRHLANVTQLVKQLRTERPSGPG GEMGVCEKHREPLKLYCEEDQMPICVVCDRSREHRGHSVLPLEEAVEGFKEQIQNQLDHLKRVKDLKKRRRAQGEQARAELLSLTQMERE KIVWEFEQLYHSLKEHEYRLLARLEELDLAIYNSINGAITQFSCNISHLSSLIAQLEEKQQQPTRELLQDIGDTLSSAGIGRTGCFIATS >In-frame_TRIM27_ENST00000377199_chr6_28879473_-_PTPRR_ENST00000440835_chr12_71050597_-_326aa MASGSVAECLQQETTCPVCLQYFAEPMMLDCGHNICCACLARCWGTAETNVSCPQCRETFPQRHMRPNRHLANVTQLVKQLRTERPSGPG GEMGVCEKHREPLKLYCEEDQMPICVVCDRSREHRGHSVLPLEEAVEGFKEQIQNQLDHLKRVKDLKKRRRAQGEQARAELLSLTQMERE KIVWEFEQLYHSLKEHEYRLLARLEELDLAIYNSINGAITQFSCNISHLSSLIAQLEEKQQQPTRELLQDIGDTLSSAGIGRTGCFIATS |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| >In-frame_TRIM27_ENST00000377194_chr6_28879473_-_PTPRR_ENST00000283228_chr12_71050597_-_978nt ATGGCCTCCGGGAGTGTGGCCGAGTGCCTGCAGCAGGAGACCACCTGCCCCGTGTGCCTGCAGTACTTCGCAGAGCCCATGATGCTCGAC TGCGGCCATAACATCTGTTGCGCGTGCCTCGCCCGCTGCTGGGGCACGGCAGAGACTAACGTGTCGTGCCCGCAGTGCCGGGAGACCTTC CCGCAGAGGCACATGCGGCCCAACCGGCACCTGGCCAACGTGACCCAACTGGTAAAGCAGCTGCGCACCGAGCGGCCGTCGGGGCCCGGC GGCGAGATGGGCGTGTGCGAGAAGCACCGCGAGCCCCTGAAGCTGTACTGCGAGGAGGACCAGATGCCCATCTGCGTGGTGTGCGACCGC TCCCGCGAGCACCGCGGCCACAGCGTGCTGCCGCTCGAGGAGGCGGTGGAGGGCTTCAAGGAGCAAATCCAGAACCAGCTCGACCATTTA AAAAGAGTGAAAGATTTAAAGAAGAGACGTCGGGCCCAGGGGGAACAGGCACGAGCTGAACTCTTGAGCCTAACCCAGATGGAGAGGGAG AAGATTGTTTGGGAGTTTGAGCAGCTGTATCACTCCTTAAAGGAGCATGAGTATCGCCTCCTGGCCCGCCTTGAGGAGCTAGACTTGGCC ATCTACAATAGCATCAATGGTGCCATCACCCAGTTCTCTTGCAACATCTCCCACCTCAGCAGCCTGATCGCTCAGCTAGAAGAGAAGCAG CAGCAGCCCACCAGGGAGCTCCTGCAGGACATTGGGGACACATTGAGCAGTGCAGGAATAGGTAGAACAGGGTGTTTTATTGCTACATCC ATTGGCTGTCAACAGCTGAAAGAAGAAGGAGTTGTGGATGCACTAAGCATTGTCTGCCAGCTTCGTATGGATAGAGGTGGAATGGTGCAA >In-frame_TRIM27_ENST00000377194_chr6_28879473_-_PTPRR_ENST00000440835_chr12_71050597_-_978nt ATGGCCTCCGGGAGTGTGGCCGAGTGCCTGCAGCAGGAGACCACCTGCCCCGTGTGCCTGCAGTACTTCGCAGAGCCCATGATGCTCGAC TGCGGCCATAACATCTGTTGCGCGTGCCTCGCCCGCTGCTGGGGCACGGCAGAGACTAACGTGTCGTGCCCGCAGTGCCGGGAGACCTTC CCGCAGAGGCACATGCGGCCCAACCGGCACCTGGCCAACGTGACCCAACTGGTAAAGCAGCTGCGCACCGAGCGGCCGTCGGGGCCCGGC GGCGAGATGGGCGTGTGCGAGAAGCACCGCGAGCCCCTGAAGCTGTACTGCGAGGAGGACCAGATGCCCATCTGCGTGGTGTGCGACCGC TCCCGCGAGCACCGCGGCCACAGCGTGCTGCCGCTCGAGGAGGCGGTGGAGGGCTTCAAGGAGCAAATCCAGAACCAGCTCGACCATTTA AAAAGAGTGAAAGATTTAAAGAAGAGACGTCGGGCCCAGGGGGAACAGGCACGAGCTGAACTCTTGAGCCTAACCCAGATGGAGAGGGAG AAGATTGTTTGGGAGTTTGAGCAGCTGTATCACTCCTTAAAGGAGCATGAGTATCGCCTCCTGGCCCGCCTTGAGGAGCTAGACTTGGCC ATCTACAATAGCATCAATGGTGCCATCACCCAGTTCTCTTGCAACATCTCCCACCTCAGCAGCCTGATCGCTCAGCTAGAAGAGAAGCAG CAGCAGCCCACCAGGGAGCTCCTGCAGGACATTGGGGACACATTGAGCAGTGCAGGAATAGGTAGAACAGGGTGTTTTATTGCTACATCC ATTGGCTGTCAACAGCTGAAAGAAGAAGGAGTTGTGGATGCACTAAGCATTGTCTGCCAGCTTCGTATGGATAGAGGTGGAATGGTGCAA >In-frame_TRIM27_ENST00000377199_chr6_28879473_-_PTPRR_ENST00000283228_chr12_71050597_-_978nt ATGGCCTCCGGGAGTGTGGCCGAGTGCCTGCAGCAGGAGACCACCTGCCCCGTGTGCCTGCAGTACTTCGCAGAGCCCATGATGCTCGAC TGCGGCCATAACATCTGTTGCGCGTGCCTCGCCCGCTGCTGGGGCACGGCAGAGACTAACGTGTCGTGCCCGCAGTGCCGGGAGACCTTC CCGCAGAGGCACATGCGGCCCAACCGGCACCTGGCCAACGTGACCCAACTGGTAAAGCAGCTGCGCACCGAGCGGCCGTCGGGGCCCGGC GGCGAGATGGGCGTGTGCGAGAAGCACCGCGAGCCCCTGAAGCTGTACTGCGAGGAGGACCAGATGCCCATCTGCGTGGTGTGCGACCGC TCCCGCGAGCACCGCGGCCACAGCGTGCTGCCGCTCGAGGAGGCGGTGGAGGGCTTCAAGGAGCAAATCCAGAACCAGCTCGACCATTTA AAAAGAGTGAAAGATTTAAAGAAGAGACGTCGGGCCCAGGGGGAACAGGCACGAGCTGAACTCTTGAGCCTAACCCAGATGGAGAGGGAG AAGATTGTTTGGGAGTTTGAGCAGCTGTATCACTCCTTAAAGGAGCATGAGTATCGCCTCCTGGCCCGCCTTGAGGAGCTAGACTTGGCC ATCTACAATAGCATCAATGGTGCCATCACCCAGTTCTCTTGCAACATCTCCCACCTCAGCAGCCTGATCGCTCAGCTAGAAGAGAAGCAG CAGCAGCCCACCAGGGAGCTCCTGCAGGACATTGGGGACACATTGAGCAGTGCAGGAATAGGTAGAACAGGGTGTTTTATTGCTACATCC ATTGGCTGTCAACAGCTGAAAGAAGAAGGAGTTGTGGATGCACTAAGCATTGTCTGCCAGCTTCGTATGGATAGAGGTGGAATGGTGCAA >In-frame_TRIM27_ENST00000377199_chr6_28879473_-_PTPRR_ENST00000440835_chr12_71050597_-_978nt ATGGCCTCCGGGAGTGTGGCCGAGTGCCTGCAGCAGGAGACCACCTGCCCCGTGTGCCTGCAGTACTTCGCAGAGCCCATGATGCTCGAC TGCGGCCATAACATCTGTTGCGCGTGCCTCGCCCGCTGCTGGGGCACGGCAGAGACTAACGTGTCGTGCCCGCAGTGCCGGGAGACCTTC CCGCAGAGGCACATGCGGCCCAACCGGCACCTGGCCAACGTGACCCAACTGGTAAAGCAGCTGCGCACCGAGCGGCCGTCGGGGCCCGGC GGCGAGATGGGCGTGTGCGAGAAGCACCGCGAGCCCCTGAAGCTGTACTGCGAGGAGGACCAGATGCCCATCTGCGTGGTGTGCGACCGC TCCCGCGAGCACCGCGGCCACAGCGTGCTGCCGCTCGAGGAGGCGGTGGAGGGCTTCAAGGAGCAAATCCAGAACCAGCTCGACCATTTA AAAAGAGTGAAAGATTTAAAGAAGAGACGTCGGGCCCAGGGGGAACAGGCACGAGCTGAACTCTTGAGCCTAACCCAGATGGAGAGGGAG AAGATTGTTTGGGAGTTTGAGCAGCTGTATCACTCCTTAAAGGAGCATGAGTATCGCCTCCTGGCCCGCCTTGAGGAGCTAGACTTGGCC ATCTACAATAGCATCAATGGTGCCATCACCCAGTTCTCTTGCAACATCTCCCACCTCAGCAGCCTGATCGCTCAGCTAGAAGAGAAGCAG CAGCAGCCCACCAGGGAGCTCCTGCAGGACATTGGGGACACATTGAGCAGTGCAGGAATAGGTAGAACAGGGTGTTTTATTGCTACATCC ATTGGCTGTCAACAGCTGAAAGAAGAAGGAGTTGTGGATGCACTAAGCATTGTCTGCCAGCTTCGTATGGATAGAGGTGGAATGGTGCAA |
| * Fusion transcript sequences (Full-length transcript). |
| >In-frame_TRIM27_ENST00000377194_chr6_28879473_-_PTPRR_ENST00000283228_chr12_71050597_-_2436nt TTTACGCTGCCGCCGGCATCCGCTCGGACGCGGCCACGTTGTCTTGCGCGCTTTGCCCGCCTGGCCCTGGGACTCTGACCCTCGGCTACC CTTTCCTGCCCCACTAGCGTGGCCGCGAGCCTCGGTGAGCCGGCCGTATTCCCGCTCTCGCTTAGGGGGCACAGGCGCAGGCATCGGCCC GGCCACTCCAAGCCTTCGGTGCGCGGGCGCGTCTGGGATACGGGCCCGGGAGGCGCCGCCCTCCGTCCGCCCGGTGCCTCTCAGGAACAG CGAACCGGAGAGAGCGCCGGAGAGTTGGGCTCAGTGCAGAGCTCGGCGCCGGGGCCCATGCCCGTGCGCCCCCGCAGGCCGGCGCCATGG CCTCCGGGAGTGTGGCCGAGTGCCTGCAGCAGGAGACCACCTGCCCCGTGTGCCTGCAGTACTTCGCAGAGCCCATGATGCTCGACTGCG GCCATAACATCTGTTGCGCGTGCCTCGCCCGCTGCTGGGGCACGGCAGAGACTAACGTGTCGTGCCCGCAGTGCCGGGAGACCTTCCCGC AGAGGCACATGCGGCCCAACCGGCACCTGGCCAACGTGACCCAACTGGTAAAGCAGCTGCGCACCGAGCGGCCGTCGGGGCCCGGCGGCG AGATGGGCGTGTGCGAGAAGCACCGCGAGCCCCTGAAGCTGTACTGCGAGGAGGACCAGATGCCCATCTGCGTGGTGTGCGACCGCTCCC GCGAGCACCGCGGCCACAGCGTGCTGCCGCTCGAGGAGGCGGTGGAGGGCTTCAAGGAGCAAATCCAGAACCAGCTCGACCATTTAAAAA GAGTGAAAGATTTAAAGAAGAGACGTCGGGCCCAGGGGGAACAGGCACGAGCTGAACTCTTGAGCCTAACCCAGATGGAGAGGGAGAAGA TTGTTTGGGAGTTTGAGCAGCTGTATCACTCCTTAAAGGAGCATGAGTATCGCCTCCTGGCCCGCCTTGAGGAGCTAGACTTGGCCATCT ACAATAGCATCAATGGTGCCATCACCCAGTTCTCTTGCAACATCTCCCACCTCAGCAGCCTGATCGCTCAGCTAGAAGAGAAGCAGCAGC AGCCCACCAGGGAGCTCCTGCAGGACATTGGGGACACATTGAGCAGTGCAGGAATAGGTAGAACAGGGTGTTTTATTGCTACATCCATTG GCTGTCAACAGCTGAAAGAAGAAGGAGTTGTGGATGCACTAAGCATTGTCTGCCAGCTTCGTATGGATAGAGGTGGAATGGTGCAAACCA GTGAGCAGTATGAATTTGTGCACCATGCTCTGTGCCTGTATGAGAGCAGACTTTCAGCAGAGACTGTCCAGTGAGTCATTGAAGACTTGT CAGACCATCAATCTCTTGGGGTGATTAATCAAATTACCCACCCAAGGCTTCTAGAAGGAGCTTCCTGCAATGGAAGGAAGGAGAAGCTCT GAAGCCCATGTATGGCATGGATTGTGGAAGACTGGGCAACATATTTAAGATTTCCAGCTCCTTGTGTATATGAATGCATTTGTAAGCATC CCCCAAATTATTCTGAAGGTTTTTTGATGATGGAGGTATGATAGGTTTATCACACAGCCTAAGGCAGATTTTGTTTTGTCTGTACTGACT CTATCTGCCACACAGAATGTATGTATGTAATATTCAGTAATAAATGTCATCAGGTGATGACTGGATGAGCTGCTGAAGACATTCGTATTA TGTGTTAGATGCTTTAATGTTTGCAAAATCTGTCTTGTGAATGGACTGTCAGCTGTTAAACTGTTCCTGTTTTGAAGTGCTATTACCTTT CTCAGTTACCAGAATCTTGCTGCTAAAGTTGCAAGTGATTGATAATGGATTTTTAACAGAGAAGTCTTTGTTTTTGAAAAACAAAAATCA AAAACAGTAACTATTTTATATGGAAATGTGTCTTGATAATATTACCTATTAAATGTGTATTTATAGTCCCTCCTATCAAACAATTACAGA GCACAATGATTGTCATTGGGTATATATGTATTTACTCTCTATTATTGGGCATAAAGGTGGCTTCTGCTCCAGAACTCTATCCACTGTATT TCCACATCGTGAGTCATTTTACTTTAAAAGGGAAAAACAAATTTGTAGCAACTCTGAAGTATCAAGAGTTTTAACTACTTGTCTCTCTTT TGCTAAGAAGGGATTTTTGAATATGCTATCTACCTGGAATCTCTCTCTCAACAAAAGGTATATGCCTTCAGGAATGATATAATCTGTCCC ATTTTCGAGGCTCCTTATAAGGACATTTCCATGTATGTCCTTACATTTCTGAAAGCTTTCAATCTTCAAGAGACAAAAAAAATTAAAATA ACTACCCTCAGCAAACACTAGCTGTTCTGCTCATATATGAATTTTTAATGCAGCAATGTTGACTTTGTTTCATACTGCCAATAAACTCTT >In-frame_TRIM27_ENST00000377194_chr6_28879473_-_PTPRR_ENST00000440835_chr12_71050597_-_2445nt TTTACGCTGCCGCCGGCATCCGCTCGGACGCGGCCACGTTGTCTTGCGCGCTTTGCCCGCCTGGCCCTGGGACTCTGACCCTCGGCTACC CTTTCCTGCCCCACTAGCGTGGCCGCGAGCCTCGGTGAGCCGGCCGTATTCCCGCTCTCGCTTAGGGGGCACAGGCGCAGGCATCGGCCC GGCCACTCCAAGCCTTCGGTGCGCGGGCGCGTCTGGGATACGGGCCCGGGAGGCGCCGCCCTCCGTCCGCCCGGTGCCTCTCAGGAACAG CGAACCGGAGAGAGCGCCGGAGAGTTGGGCTCAGTGCAGAGCTCGGCGCCGGGGCCCATGCCCGTGCGCCCCCGCAGGCCGGCGCCATGG CCTCCGGGAGTGTGGCCGAGTGCCTGCAGCAGGAGACCACCTGCCCCGTGTGCCTGCAGTACTTCGCAGAGCCCATGATGCTCGACTGCG GCCATAACATCTGTTGCGCGTGCCTCGCCCGCTGCTGGGGCACGGCAGAGACTAACGTGTCGTGCCCGCAGTGCCGGGAGACCTTCCCGC AGAGGCACATGCGGCCCAACCGGCACCTGGCCAACGTGACCCAACTGGTAAAGCAGCTGCGCACCGAGCGGCCGTCGGGGCCCGGCGGCG AGATGGGCGTGTGCGAGAAGCACCGCGAGCCCCTGAAGCTGTACTGCGAGGAGGACCAGATGCCCATCTGCGTGGTGTGCGACCGCTCCC GCGAGCACCGCGGCCACAGCGTGCTGCCGCTCGAGGAGGCGGTGGAGGGCTTCAAGGAGCAAATCCAGAACCAGCTCGACCATTTAAAAA GAGTGAAAGATTTAAAGAAGAGACGTCGGGCCCAGGGGGAACAGGCACGAGCTGAACTCTTGAGCCTAACCCAGATGGAGAGGGAGAAGA TTGTTTGGGAGTTTGAGCAGCTGTATCACTCCTTAAAGGAGCATGAGTATCGCCTCCTGGCCCGCCTTGAGGAGCTAGACTTGGCCATCT ACAATAGCATCAATGGTGCCATCACCCAGTTCTCTTGCAACATCTCCCACCTCAGCAGCCTGATCGCTCAGCTAGAAGAGAAGCAGCAGC AGCCCACCAGGGAGCTCCTGCAGGACATTGGGGACACATTGAGCAGTGCAGGAATAGGTAGAACAGGGTGTTTTATTGCTACATCCATTG GCTGTCAACAGCTGAAAGAAGAAGGAGTTGTGGATGCACTAAGCATTGTCTGCCAGCTTCGTATGGATAGAGGTGGAATGGTGCAAACCA GTGAGCAGTATGAATTTGTGCACCATGCTCTGTGCCTGTATGAGAGCAGACTTTCAGCAGAGACTGTCCAGTGAGTCATTGAAGACTTGT CAGACCATCAATCTCTTGGGGTGATTAATCAAATTACCCACCCAAGGCTTCTAGAAGGAGCTTCCTGCAATGGAAGGAAGGAGAAGCTCT GAAGCCCATGTATGGCATGGATTGTGGAAGACTGGGCAACATATTTAAGATTTCCAGCTCCTTGTGTATATGAATGCATTTGTAAGCATC CCCCAAATTATTCTGAAGGTTTTTTGATGATGGAGGTATGATAGGTTTATCACACAGCCTAAGGCAGATTTTGTTTTGTCTGTACTGACT CTATCTGCCACACAGAATGTATGTATGTAATATTCAGTAATAAATGTCATCAGGTGATGACTGGATGAGCTGCTGAAGACATTCGTATTA TGTGTTAGATGCTTTAATGTTTGCAAAATCTGTCTTGTGAATGGACTGTCAGCTGTTAAACTGTTCCTGTTTTGAAGTGCTATTACCTTT CTCAGTTACCAGAATCTTGCTGCTAAAGTTGCAAGTGATTGATAATGGATTTTTAACAGAGAAGTCTTTGTTTTTGAAAAACAAAAATCA AAAACAGTAACTATTTTATATGGAAATGTGTCTTGATAATATTACCTATTAAATGTGTATTTATAGTCCCTCCTATCAAACAATTACAGA GCACAATGATTGTCATTGGGTATATATGTATTTACTCTCTATTATTGGGCATAAAGGTGGCTTCTGCTCCAGAACTCTATCCACTGTATT TCCACATCGTGAGTCATTTTACTTTAAAAGGGAAAAACAAATTTGTAGCAACTCTGAAGTATCAAGAGTTTTAACTACTTGTCTCTCTTT TGCTAAGAAGGGATTTTTGAATATGCTATCTACCTGGAATCTCTCTCTCAACAAAAGGTATATGCCTTCAGGAATGATATAATCTGTCCC ATTTTCGAGGCTCCTTATAAGGACATTTCCATGTATGTCCTTACATTTCTGAAAGCTTTCAATCTTCAAGAGACAAAAAAAATTAAAATA ACTACCCTCAGCAAACACTAGCTGTTCTGCTCATATATGAATTTTTAATGCAGCAATGTTGACTTTGTTTCATACTGCCAATAAACTCTT >In-frame_TRIM27_ENST00000377199_chr6_28879473_-_PTPRR_ENST00000283228_chr12_71050597_-_2437nt GTTTACGCTGCCGCCGGCATCCGCTCGGACGCGGCCACGTTGTCTTGCGCGCTTTGCCCGCCTGGCCCTGGGACTCTGACCCTCGGCTAC CCTTTCCTGCCCCACTAGCGTGGCCGCGAGCCTCGGTGAGCCGGCCGTATTCCCGCTCTCGCTTAGGGGGCACAGGCGCAGGCATCGGCC CGGCCACTCCAAGCCTTCGGTGCGCGGGCGCGTCTGGGATACGGGCCCGGGAGGCGCCGCCCTCCGTCCGCCCGGTGCCTCTCAGGAACA GCGAACCGGAGAGAGCGCCGGAGAGTTGGGCTCAGTGCAGAGCTCGGCGCCGGGGCCCATGCCCGTGCGCCCCCGCAGGCCGGCGCCATG GCCTCCGGGAGTGTGGCCGAGTGCCTGCAGCAGGAGACCACCTGCCCCGTGTGCCTGCAGTACTTCGCAGAGCCCATGATGCTCGACTGC GGCCATAACATCTGTTGCGCGTGCCTCGCCCGCTGCTGGGGCACGGCAGAGACTAACGTGTCGTGCCCGCAGTGCCGGGAGACCTTCCCG CAGAGGCACATGCGGCCCAACCGGCACCTGGCCAACGTGACCCAACTGGTAAAGCAGCTGCGCACCGAGCGGCCGTCGGGGCCCGGCGGC GAGATGGGCGTGTGCGAGAAGCACCGCGAGCCCCTGAAGCTGTACTGCGAGGAGGACCAGATGCCCATCTGCGTGGTGTGCGACCGCTCC CGCGAGCACCGCGGCCACAGCGTGCTGCCGCTCGAGGAGGCGGTGGAGGGCTTCAAGGAGCAAATCCAGAACCAGCTCGACCATTTAAAA AGAGTGAAAGATTTAAAGAAGAGACGTCGGGCCCAGGGGGAACAGGCACGAGCTGAACTCTTGAGCCTAACCCAGATGGAGAGGGAGAAG ATTGTTTGGGAGTTTGAGCAGCTGTATCACTCCTTAAAGGAGCATGAGTATCGCCTCCTGGCCCGCCTTGAGGAGCTAGACTTGGCCATC TACAATAGCATCAATGGTGCCATCACCCAGTTCTCTTGCAACATCTCCCACCTCAGCAGCCTGATCGCTCAGCTAGAAGAGAAGCAGCAG CAGCCCACCAGGGAGCTCCTGCAGGACATTGGGGACACATTGAGCAGTGCAGGAATAGGTAGAACAGGGTGTTTTATTGCTACATCCATT GGCTGTCAACAGCTGAAAGAAGAAGGAGTTGTGGATGCACTAAGCATTGTCTGCCAGCTTCGTATGGATAGAGGTGGAATGGTGCAAACC AGTGAGCAGTATGAATTTGTGCACCATGCTCTGTGCCTGTATGAGAGCAGACTTTCAGCAGAGACTGTCCAGTGAGTCATTGAAGACTTG TCAGACCATCAATCTCTTGGGGTGATTAATCAAATTACCCACCCAAGGCTTCTAGAAGGAGCTTCCTGCAATGGAAGGAAGGAGAAGCTC TGAAGCCCATGTATGGCATGGATTGTGGAAGACTGGGCAACATATTTAAGATTTCCAGCTCCTTGTGTATATGAATGCATTTGTAAGCAT CCCCCAAATTATTCTGAAGGTTTTTTGATGATGGAGGTATGATAGGTTTATCACACAGCCTAAGGCAGATTTTGTTTTGTCTGTACTGAC TCTATCTGCCACACAGAATGTATGTATGTAATATTCAGTAATAAATGTCATCAGGTGATGACTGGATGAGCTGCTGAAGACATTCGTATT ATGTGTTAGATGCTTTAATGTTTGCAAAATCTGTCTTGTGAATGGACTGTCAGCTGTTAAACTGTTCCTGTTTTGAAGTGCTATTACCTT TCTCAGTTACCAGAATCTTGCTGCTAAAGTTGCAAGTGATTGATAATGGATTTTTAACAGAGAAGTCTTTGTTTTTGAAAAACAAAAATC AAAAACAGTAACTATTTTATATGGAAATGTGTCTTGATAATATTACCTATTAAATGTGTATTTATAGTCCCTCCTATCAAACAATTACAG AGCACAATGATTGTCATTGGGTATATATGTATTTACTCTCTATTATTGGGCATAAAGGTGGCTTCTGCTCCAGAACTCTATCCACTGTAT TTCCACATCGTGAGTCATTTTACTTTAAAAGGGAAAAACAAATTTGTAGCAACTCTGAAGTATCAAGAGTTTTAACTACTTGTCTCTCTT TTGCTAAGAAGGGATTTTTGAATATGCTATCTACCTGGAATCTCTCTCTCAACAAAAGGTATATGCCTTCAGGAATGATATAATCTGTCC CATTTTCGAGGCTCCTTATAAGGACATTTCCATGTATGTCCTTACATTTCTGAAAGCTTTCAATCTTCAAGAGACAAAAAAAATTAAAAT AACTACCCTCAGCAAACACTAGCTGTTCTGCTCATATATGAATTTTTAATGCAGCAATGTTGACTTTGTTTCATACTGCCAATAAACTCT >In-frame_TRIM27_ENST00000377199_chr6_28879473_-_PTPRR_ENST00000440835_chr12_71050597_-_2446nt GTTTACGCTGCCGCCGGCATCCGCTCGGACGCGGCCACGTTGTCTTGCGCGCTTTGCCCGCCTGGCCCTGGGACTCTGACCCTCGGCTAC CCTTTCCTGCCCCACTAGCGTGGCCGCGAGCCTCGGTGAGCCGGCCGTATTCCCGCTCTCGCTTAGGGGGCACAGGCGCAGGCATCGGCC CGGCCACTCCAAGCCTTCGGTGCGCGGGCGCGTCTGGGATACGGGCCCGGGAGGCGCCGCCCTCCGTCCGCCCGGTGCCTCTCAGGAACA GCGAACCGGAGAGAGCGCCGGAGAGTTGGGCTCAGTGCAGAGCTCGGCGCCGGGGCCCATGCCCGTGCGCCCCCGCAGGCCGGCGCCATG GCCTCCGGGAGTGTGGCCGAGTGCCTGCAGCAGGAGACCACCTGCCCCGTGTGCCTGCAGTACTTCGCAGAGCCCATGATGCTCGACTGC GGCCATAACATCTGTTGCGCGTGCCTCGCCCGCTGCTGGGGCACGGCAGAGACTAACGTGTCGTGCCCGCAGTGCCGGGAGACCTTCCCG CAGAGGCACATGCGGCCCAACCGGCACCTGGCCAACGTGACCCAACTGGTAAAGCAGCTGCGCACCGAGCGGCCGTCGGGGCCCGGCGGC GAGATGGGCGTGTGCGAGAAGCACCGCGAGCCCCTGAAGCTGTACTGCGAGGAGGACCAGATGCCCATCTGCGTGGTGTGCGACCGCTCC CGCGAGCACCGCGGCCACAGCGTGCTGCCGCTCGAGGAGGCGGTGGAGGGCTTCAAGGAGCAAATCCAGAACCAGCTCGACCATTTAAAA AGAGTGAAAGATTTAAAGAAGAGACGTCGGGCCCAGGGGGAACAGGCACGAGCTGAACTCTTGAGCCTAACCCAGATGGAGAGGGAGAAG ATTGTTTGGGAGTTTGAGCAGCTGTATCACTCCTTAAAGGAGCATGAGTATCGCCTCCTGGCCCGCCTTGAGGAGCTAGACTTGGCCATC TACAATAGCATCAATGGTGCCATCACCCAGTTCTCTTGCAACATCTCCCACCTCAGCAGCCTGATCGCTCAGCTAGAAGAGAAGCAGCAG CAGCCCACCAGGGAGCTCCTGCAGGACATTGGGGACACATTGAGCAGTGCAGGAATAGGTAGAACAGGGTGTTTTATTGCTACATCCATT GGCTGTCAACAGCTGAAAGAAGAAGGAGTTGTGGATGCACTAAGCATTGTCTGCCAGCTTCGTATGGATAGAGGTGGAATGGTGCAAACC AGTGAGCAGTATGAATTTGTGCACCATGCTCTGTGCCTGTATGAGAGCAGACTTTCAGCAGAGACTGTCCAGTGAGTCATTGAAGACTTG TCAGACCATCAATCTCTTGGGGTGATTAATCAAATTACCCACCCAAGGCTTCTAGAAGGAGCTTCCTGCAATGGAAGGAAGGAGAAGCTC TGAAGCCCATGTATGGCATGGATTGTGGAAGACTGGGCAACATATTTAAGATTTCCAGCTCCTTGTGTATATGAATGCATTTGTAAGCAT CCCCCAAATTATTCTGAAGGTTTTTTGATGATGGAGGTATGATAGGTTTATCACACAGCCTAAGGCAGATTTTGTTTTGTCTGTACTGAC TCTATCTGCCACACAGAATGTATGTATGTAATATTCAGTAATAAATGTCATCAGGTGATGACTGGATGAGCTGCTGAAGACATTCGTATT ATGTGTTAGATGCTTTAATGTTTGCAAAATCTGTCTTGTGAATGGACTGTCAGCTGTTAAACTGTTCCTGTTTTGAAGTGCTATTACCTT TCTCAGTTACCAGAATCTTGCTGCTAAAGTTGCAAGTGATTGATAATGGATTTTTAACAGAGAAGTCTTTGTTTTTGAAAAACAAAAATC AAAAACAGTAACTATTTTATATGGAAATGTGTCTTGATAATATTACCTATTAAATGTGTATTTATAGTCCCTCCTATCAAACAATTACAG AGCACAATGATTGTCATTGGGTATATATGTATTTACTCTCTATTATTGGGCATAAAGGTGGCTTCTGCTCCAGAACTCTATCCACTGTAT TTCCACATCGTGAGTCATTTTACTTTAAAAGGGAAAAACAAATTTGTAGCAACTCTGAAGTATCAAGAGTTTTAACTACTTGTCTCTCTT TTGCTAAGAAGGGATTTTTGAATATGCTATCTACCTGGAATCTCTCTCTCAACAAAAGGTATATGCCTTCAGGAATGATATAATCTGTCC CATTTTCGAGGCTCCTTATAAGGACATTTCCATGTATGTCCTTACATTTCTGAAAGCTTTCAATCTTCAAGAGACAAAAAAAATTAAAAT AACTACCCTCAGCAAACACTAGCTGTTCTGCTCATATATGAATTTTTAATGCAGCAATGTTGACTTTGTTTCATACTGCCAATAAACTCT |
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FusionGenePPI for TRIM27_PTPRR |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| TRIM27 | FBF1, ZBTB16, BEGAIN, MAGEA11, DNMT1, FXYD6, MCOLN1, TRIM27, TRIM11, TRIM23, TRIM29, TRIM32, PRAM1, PML, EIF3E, MBD4, MBD2, MBD3, UBE2D1, UBE2D2, UBE2D3, UBE2H, UBE2K, UBE2T, UBE2A, UBE2D4, UBE2I, UBE2L6, UBE2J1, UBE2W, UBE2Z, UBE2O, UBE2U, TAL1, GTF2F1, MED21, FBXL19, HR, HDAC1, NFYC, CHD4, PIAS1, PIAS3, PIAS2, PIAS4, UBC, ATXN7, MDM2, TP53, MAGED4B, MAGEF1, MAGEL2, RB1, EID1, UBE2E1, UBE2E3, UBE2E2, UBE2N, NOD2, DAXX, CUL4B, CUL5, IKBKE, TBK1, CHUK, IKBKB, EPC1, GFI1B, UCHL3, UCHL5, USP2, USP7, OTUB2, PIK3C2B, PIK3C2A, TUBGCP4, HDAC6, RNF25, TRIM43, ARIH2, RBX1, TRIM31, UHRF2, TRIM9, TRAF5, TRIM21, BMI1, TRIM55, LATS2, ARNT2, DGCR6, EIF4E, IQCE, KIF1A, MVP, NDE1, PAX7, MYOD1, AES, BAG1, BMP7, BYSL, CKS1B, CLK2, CSRP2, DCX, DDX6, EHHADH, FHL3, FOXC2, GEM, GFAP, GRB2, ILK, KIFC3, LASP1, LMO1, MCM7, MOS, NEDD9, OAS1, CDK18, POLE2, PPID, PPL, PRKAA1, PSMA1, PSMB1, PSMB3, SDCBP, SRSF2, SIAH1, SNRPA, SNRPB2, TCEA2, TEAD4, TMSB4X, TMSB4XP6, TPM3, TUFT1, XPA, ZNF79, GPANK1, NELFE, ARHGEF5, NCK2, STK16, EIF3D, CDC23, RAB29, MTMR6, EIF4E2, BAG5, POLR1C, SPATA2, JOSD1, NR1D2, SORBS3, TXNDC9, MAD2L2, STK25, KAT5, NEBL, POLR3C, FARS2, NEK6, MID2, NUDT21, MAPKBP1, PTPN23, PRPF31, FOXB1, INPP5J, MAT2B, BABAM1, NME7, ARHGEF3, TPRKB, MEMO1, VPS28, CDKL3, SLC15A3, WT1-AS, AMOTL2, ZNF581, FBXW5, FAM64A, CCHCR1, FAM193B, KCTD9, CHCHD3, WDYHV1, RBM23, C14orf105, CCDC87, RBM41, ABCF3, TBC1D22B, ZNF446, CCDC94, RCOR3, USE1, FAM214A, LGALS14, CSRP2BP, GATAD2B, STAMBPL1, TSHZ3, RNF213, FANCM, ZNF250, DMRT3, SH2D4A, KIF9, AEN, MRPL40, SCNM1, C20orf195, ZFYVE21, LENG1, ARMC7, ZC2HC1C, CCDC102B, CCDC92, FAM214B, KIAA1683, NDEL1, PUS7L, FAM110A, FAM103A1, DTNBP1, PLEKHN1, SPATC1L, TCHP, UTP23, VPS25, GFM2, ZGPAT, BEX2, LINGO1, FAM83A, ATPAF2, RHPN1, PTPMT1, HAUS1, ZMYND19, GLYCTK, GNPDA2, ZNF572, SIRPA, CWF19L2, LINC00526, ZNF417, IQUB, RIBC1, CDC20B, PPP1R18, ZFC3H1, CPNE2, NEIL2, TTLL10, TSGA10IP, KANSL1, FAM126B, TRIM42, ARPIN, MIA3, NOTCH2NL, FLJ38668, BEND7, IDI2, SURF2, ZNF219, FAM170A, RAB11B, ZNF621, FOXD4L6, ARHGAP25, IER2, CEP162, LCA5, RPGRIP1L, ILF2, STK26, C1orf109, UBL5, NIF3L1, ABHD17A, KPNA1, RNF2, TCF20, TSNAX, USP11, CEP135, HMG20A, TINF2, RACGAP1, BCOR, SLAIN2, TCEAL4, ELMSAN1, C10orf2, GLI1, BAG6, RIPK1, LGALS3BP, GLTSCR2, IKZF5, MAP7D2, ZNF764, POTEB3, C1orf106, KRBA1, ZNF785, SMARCB1 | PTPRR | MAPK1, MAPK3, MAPK7, MAPK14, NTRK1, CEP290, EGFR, ERBB2, IGF1R, RET, MST1R, ERBB4, FGFR2, FGFR4, KDR, TEK, INSR, ALDH18A1, DHPS, PNMA2, TRIM11, KIAA0196, TBC1D5, DNAJC13, SNX6, PTPRR, MAPK1IP1L, MAPKAPK3, MAD2L1BP, CBS, MAPK11, CCT8L1P, HSPA4L, LMTK2, AATK, ERBB3, RYK, ROR1, ROR2, PTK7, EPHA2 |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for TRIM27_PTPRR |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for TRIM27_PTPRR |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Tgene | PTPRR | C0041696 | Unipolar Depression | 1 | PSYGENET |
| Tgene | PTPRR | C1269683 | Major Depressive Disorder | 1 | PSYGENET |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
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