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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 39294

FusionGeneSummary for TPX2_UNC5D

check button Fusion gene summary
Fusion gene informationFusion gene name: TPX2_UNC5D
Fusion gene ID: 39294
HgeneTgene
Gene symbol

TPX2

UNC5D

Gene ID

22974

137970

Gene nameTPX2, microtubule nucleation factorunc-5 netrin receptor D
SynonymsC20orf1|C20orf2|DIL-2|DIL2|FLS353|GD:C20orf1|HCA519|HCTP4|REPP86|p100PRO34692|Unc5h4
Cytomap

20q11.21

8p12

Type of geneprotein-codingprotein-coding
Descriptiontargeting protein for Xklp2TPX2, microtubule-associated protein homologTPX2, microtubule-associated, homologdifferentially expressed in cancerous and non-cancerous lung cells 2differentially expressed in lung cellshepatocellular carcinoma-associated netrin receptor UNC5Dnetrin receptor Unc5h4protein unc-5 homolog 4protein unc-5 homolog Dunc-5 homolog 4unc-5 homolog D
Modification date2018051920180329
UniProtAcc

Q9ULW0

Q6UXZ4

Ensembl transtripts involved in fusion geneENST00000340513, ENST00000300403, 
ENST00000287272, ENST00000453357, 
ENST00000404895, ENST00000420357, 
ENST00000416672, ENST00000449677, 
Fusion gene scores* DoF score14 X 8 X 12=134413 X 7 X 6=546
# samples 2314
** MAII scorelog2(23/1344*10)=-2.54682737183439
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(14/546*10)=-1.96347412397489
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: TPX2 [Title/Abstract] AND UNC5D [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneTPX2

GO:0032147

activation of protein kinase activity

14580337|19801554

HgeneTPX2

GO:0090307

mitotic spindle assembly

26165940

TgeneUNC5D

GO:0098742

cell-cell adhesion via plasma-membrane adhesion molecules

26235030


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGARVHNSCTCGA-CN-6992-01ATPX2chr20

30330450

+UNC5Dchr8

35406810

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5UTR-3CDSENST00000340513ENST00000287272TPX2chr20

30330450

+UNC5Dchr8

35406810

+
5UTR-3CDSENST00000340513ENST00000453357TPX2chr20

30330450

+UNC5Dchr8

35406810

+
5UTR-3CDSENST00000340513ENST00000404895TPX2chr20

30330450

+UNC5Dchr8

35406810

+
5UTR-3CDSENST00000340513ENST00000420357TPX2chr20

30330450

+UNC5Dchr8

35406810

+
5UTR-3CDSENST00000340513ENST00000416672TPX2chr20

30330450

+UNC5Dchr8

35406810

+
5UTR-intronENST00000340513ENST00000449677TPX2chr20

30330450

+UNC5Dchr8

35406810

+
5UTR-3CDSENST00000300403ENST00000287272TPX2chr20

30330450

+UNC5Dchr8

35406810

+
5UTR-3CDSENST00000300403ENST00000453357TPX2chr20

30330450

+UNC5Dchr8

35406810

+
5UTR-3CDSENST00000300403ENST00000404895TPX2chr20

30330450

+UNC5Dchr8

35406810

+
5UTR-3CDSENST00000300403ENST00000420357TPX2chr20

30330450

+UNC5Dchr8

35406810

+
5UTR-3CDSENST00000300403ENST00000416672TPX2chr20

30330450

+UNC5Dchr8

35406810

+
5UTR-intronENST00000300403ENST00000449677TPX2chr20

30330450

+UNC5Dchr8

35406810

+

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FusionProtFeatures for TPX2_UNC5D


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
TPX2

Q9ULW0

UNC5D

Q6UXZ4

Spindle assembly factor required for normal assembly ofmitotic spindles. Required for normal assembly of microtubulesduring apoptosis. Required for chromatin and/or kinetochoredependent microtubule nucleation. Mediates AURKA localization tospindle microtubules (PubMed:18663142, PubMed:19208764). ActivatesAURKA by promoting its autophosphorylation at 'Thr-288' andprotects this residue against dephosphorylation (PubMed:18663142,PubMed:19208764). TPX2 is inactivated upon binding to importin-alpha (PubMed:26165940). At the onset of mitosis, GOLGA2 interactswith importin-alpha, liberating TPX2 from importin-alpha, allowingTPX2 to activates AURKA kinase and stimulates local microtubulenucleation (PubMed:26165940). {ECO:0000269|PubMed:18663142,ECO:0000269|PubMed:19208764, ECO:0000269|PubMed:26165940}. Receptor for the netrin NTN4 that promotes neuronal cellsurvival (By similarity). Plays a role in cell-cell adhesion andcell guidance. Receptor for netrin involved in cell migration.Plays a role in axon guidance by mediating axon repulsion ofneuronal growth cones in the developing nervous system upon ligandbinding (By similarity). May play a role in apoptosis in responseto DNA damage (PubMed:24691657). It also acts as a dependencereceptor required for apoptosis induction when not associated withnetrin ligand (PubMed:24519068). Mediates cell-cell adhesion viaits interaction with FLRT3 on an adjacent cell (By similarity).{ECO:0000250|UniProtKB:Q8K1S2, ECO:0000305|PubMed:24519068,ECO:0000305|PubMed:24691657}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for TPX2_UNC5D


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for TPX2_UNC5D


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
TPX2AURKA, FZR1, KPNA1, KPNB1, HMMR, BRCA1, SIAH2, ZNF598, NDUFA7, THUMPD2, DNAJC8, MRPL53, SERPINH1, UBE2S, PPIF, SARNP, TWF1, SCAMP3, CDK6, IKBKB, CHUK, IKBKG, AURKB, LMNA, HDAC9, THAP11, NAP1L1, RPA3, RPA2, RPA1, GOLGA2, MAPK14, GSTM3, HIST1H2BG, AFAP1, SAP130, RBPJ, CDC5L, RNF111UNC5D


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for TPX2_UNC5D


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for TPX2_UNC5D


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource