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Fusion gene ID: 39201 |
FusionGeneSummary for TPD52_NECAB1 |
Fusion gene summary |
Fusion gene information | Fusion gene name: TPD52_NECAB1 | Fusion gene ID: 39201 | Hgene | Tgene | Gene symbol | TPD52 | NECAB1 | Gene ID | 7163 | 64168 |
Gene name | tumor protein D52 | N-terminal EF-hand calcium binding protein 1 | |
Synonyms | D52|N8L|PC-1|PrLZ|hD52 | EFCBP1|STIP-1 | |
Cytomap | 8q21.13 | 8q21.3 | |
Type of gene | protein-coding | protein-coding | |
Description | tumor protein D52prostate and colon associated proteinprostate leucine zipperprotein N8 | N-terminal EF-hand calcium-binding protein 1EF-hand calcium-binding protein 1neuronal calcium binding proteinneuronal calcium-binding protein 1synaptotagmin interacting protein 1 | |
Modification date | 20180527 | 20180523 | |
UniProtAcc | P55327 | Q8N987 | |
Ensembl transtripts involved in fusion gene | ENST00000537855, ENST00000379096, ENST00000518937, ENST00000519303, ENST00000517427, ENST00000520527, ENST00000448733, ENST00000379097, ENST00000523395, | ENST00000417640, ENST00000521954, ENST00000522820, ENST00000521366, | |
Fusion gene scores | * DoF score | 9 X 4 X 5=180 | 4 X 2 X 2=16 |
# samples | 9 | 4 | |
** MAII score | log2(9/180*10)=-1 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(4/16*10)=1.32192809488736 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: TPD52 [Title/Abstract] AND NECAB1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | BRCA | TCGA-A8-A079-01A | TPD52 | chr8 | 81083660 | - | NECAB1 | chr8 | 91813919 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-3CDS | ENST00000537855 | ENST00000417640 | TPD52 | chr8 | 81083660 | - | NECAB1 | chr8 | 91813919 | + |
intron-3UTR | ENST00000537855 | ENST00000521954 | TPD52 | chr8 | 81083660 | - | NECAB1 | chr8 | 91813919 | + |
intron-intron | ENST00000537855 | ENST00000522820 | TPD52 | chr8 | 81083660 | - | NECAB1 | chr8 | 91813919 | + |
intron-intron | ENST00000537855 | ENST00000521366 | TPD52 | chr8 | 81083660 | - | NECAB1 | chr8 | 91813919 | + |
In-frame | ENST00000379096 | ENST00000417640 | TPD52 | chr8 | 81083660 | - | NECAB1 | chr8 | 91813919 | + |
5CDS-3UTR | ENST00000379096 | ENST00000521954 | TPD52 | chr8 | 81083660 | - | NECAB1 | chr8 | 91813919 | + |
5CDS-intron | ENST00000379096 | ENST00000522820 | TPD52 | chr8 | 81083660 | - | NECAB1 | chr8 | 91813919 | + |
5CDS-intron | ENST00000379096 | ENST00000521366 | TPD52 | chr8 | 81083660 | - | NECAB1 | chr8 | 91813919 | + |
In-frame | ENST00000518937 | ENST00000417640 | TPD52 | chr8 | 81083660 | - | NECAB1 | chr8 | 91813919 | + |
5CDS-3UTR | ENST00000518937 | ENST00000521954 | TPD52 | chr8 | 81083660 | - | NECAB1 | chr8 | 91813919 | + |
5CDS-intron | ENST00000518937 | ENST00000522820 | TPD52 | chr8 | 81083660 | - | NECAB1 | chr8 | 91813919 | + |
5CDS-intron | ENST00000518937 | ENST00000521366 | TPD52 | chr8 | 81083660 | - | NECAB1 | chr8 | 91813919 | + |
intron-3CDS | ENST00000519303 | ENST00000417640 | TPD52 | chr8 | 81083660 | - | NECAB1 | chr8 | 91813919 | + |
intron-3UTR | ENST00000519303 | ENST00000521954 | TPD52 | chr8 | 81083660 | - | NECAB1 | chr8 | 91813919 | + |
intron-intron | ENST00000519303 | ENST00000522820 | TPD52 | chr8 | 81083660 | - | NECAB1 | chr8 | 91813919 | + |
intron-intron | ENST00000519303 | ENST00000521366 | TPD52 | chr8 | 81083660 | - | NECAB1 | chr8 | 91813919 | + |
intron-3CDS | ENST00000517427 | ENST00000417640 | TPD52 | chr8 | 81083660 | - | NECAB1 | chr8 | 91813919 | + |
intron-3UTR | ENST00000517427 | ENST00000521954 | TPD52 | chr8 | 81083660 | - | NECAB1 | chr8 | 91813919 | + |
intron-intron | ENST00000517427 | ENST00000522820 | TPD52 | chr8 | 81083660 | - | NECAB1 | chr8 | 91813919 | + |
intron-intron | ENST00000517427 | ENST00000521366 | TPD52 | chr8 | 81083660 | - | NECAB1 | chr8 | 91813919 | + |
intron-3CDS | ENST00000520527 | ENST00000417640 | TPD52 | chr8 | 81083660 | - | NECAB1 | chr8 | 91813919 | + |
intron-3UTR | ENST00000520527 | ENST00000521954 | TPD52 | chr8 | 81083660 | - | NECAB1 | chr8 | 91813919 | + |
intron-intron | ENST00000520527 | ENST00000522820 | TPD52 | chr8 | 81083660 | - | NECAB1 | chr8 | 91813919 | + |
intron-intron | ENST00000520527 | ENST00000521366 | TPD52 | chr8 | 81083660 | - | NECAB1 | chr8 | 91813919 | + |
intron-3CDS | ENST00000448733 | ENST00000417640 | TPD52 | chr8 | 81083660 | - | NECAB1 | chr8 | 91813919 | + |
intron-3UTR | ENST00000448733 | ENST00000521954 | TPD52 | chr8 | 81083660 | - | NECAB1 | chr8 | 91813919 | + |
intron-intron | ENST00000448733 | ENST00000522820 | TPD52 | chr8 | 81083660 | - | NECAB1 | chr8 | 91813919 | + |
intron-intron | ENST00000448733 | ENST00000521366 | TPD52 | chr8 | 81083660 | - | NECAB1 | chr8 | 91813919 | + |
intron-3CDS | ENST00000379097 | ENST00000417640 | TPD52 | chr8 | 81083660 | - | NECAB1 | chr8 | 91813919 | + |
intron-3UTR | ENST00000379097 | ENST00000521954 | TPD52 | chr8 | 81083660 | - | NECAB1 | chr8 | 91813919 | + |
intron-intron | ENST00000379097 | ENST00000522820 | TPD52 | chr8 | 81083660 | - | NECAB1 | chr8 | 91813919 | + |
intron-intron | ENST00000379097 | ENST00000521366 | TPD52 | chr8 | 81083660 | - | NECAB1 | chr8 | 91813919 | + |
intron-3CDS | ENST00000523395 | ENST00000417640 | TPD52 | chr8 | 81083660 | - | NECAB1 | chr8 | 91813919 | + |
intron-3UTR | ENST00000523395 | ENST00000521954 | TPD52 | chr8 | 81083660 | - | NECAB1 | chr8 | 91813919 | + |
intron-intron | ENST00000523395 | ENST00000522820 | TPD52 | chr8 | 81083660 | - | NECAB1 | chr8 | 91813919 | + |
intron-intron | ENST00000523395 | ENST00000521366 | TPD52 | chr8 | 81083660 | - | NECAB1 | chr8 | 91813919 | + |
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FusionProtFeatures for TPD52_NECAB1 |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
TPD52 | NECAB1 |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for TPD52_NECAB1 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_TPD52_ENST00000379096_chr8_81083660_-_NECAB1_ENST00000417640_chr8_91813919_+_325aa MDRGEQDTEESRQKXXWKIILXRIQSIFCRWCSQWRRITRAFPYHXYTXYXXSXHRRAMXIFFSALGRVXECTSSTXRPESFHPEGNGQN KERLPRSLQFGTIRNXIFIEGNPESAAVSPEFPGMCHGNYXGANPSRKARASQARSPVDSMAWKTIKPPSPETQQLLPKQPSVXCQRSRL IRRRQPVDDPDKXTPEINXXTGKEGSQTRTTRRRNYXREYXISHHACAAADVCDRRGPGRIPARSETLRGECFLPKWMLAYFYTEAFKXI >In-frame_TPD52_ENST00000518937_chr8_81083660_-_NECAB1_ENST00000417640_chr8_91813919_+_325aa MDRGEQDTEESRQKXXWKIILXRIQSIFCRWCSQWRRITRAFPYHXYTXYXXSXHRRAMXIFFSALGRVXECTSSTXRPESFHPEGNGQN KERLPRSLQFGTIRNXIFIEGNPESAAVSPEFPGMCHGNYXGANPSRKARASQARSPVDSMAWKTIKPPSPETQQLLPKQPSVXCQRSRL IRRRQPVDDPDKXTPEINXXTGKEGSQTRTTRRRNYXREYXISHHACAAADVCDRRGPGRIPARSETLRGECFLPKWMLAYFYTEAFKXI |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_TPD52_ENST00000379096_chr8_81083660_-_NECAB1_ENST00000417640_chr8_91813919_+_976nt ATGGACCGCGGCGAGCAAGATACTGAGGAGAGCAGACAAAAATGATGATGGAAAATTATCCTTTGAAGAATTCAAAGCATATTTTGCAGA TGGTGTTCTCAGTGGAGAAGAATTACACGAGCTTTTCCATACCATTGATACACATAATACTAATAATCTTGACACAGAAGAGCTATGTGA ATATTTTTCTCAGCACTTGGGCGAGTATGAGAATGTACTAGCAGCACTTGAAGACCTGAATCTTTCCATCCTGAAGGCAATGGGCAAAAC AAAGAAAGACTACCAAGAAGCCTCCAATTTGGAACAATTCGTAACTAGATTTTTATTGAAGGAAACCCTGAATCAGCTGCAGTCTCTCCA GAATTCCCTGGAATGTGCCATGGAAACTACTGAGGAGCAAACCCGTCAAGAAAGGCAAGGGCCAGCCAAGCCAGAAGTCCTGTCGATTCA ATGGCCTGGAAAACGATCAAGCCGCCGAGTCCAGAGACACAACAGCTTCTCCCCAAACAGCCCTCAGTTTAATGTCAGCGGTCCAGGCTT ATTAGAAGAAGACAACCAGTGGATGACCCAGATAAATAGACTCCAGAAATTAATTGATAGACTGGAAAAGAAGGATCTCAAACTCGAACC ACCAGAAGAAGAAATTATTGAAGGGAATACTAAATCTCACATCATGCTTGTGCAGCGGCAGATGTCTGTGATAGAAGAGGACCTGGAAGA ATTCCAGCTCGCTCTGAAACACTACGTGGAGAGTGCTTCCTCCCAAAGTGGATGCTTGCGTATTTCTATACAGAAGCTTTCAAATGAATC TCGCTACATGATCTATGAGTTCTGGGAGAATAGTAGTGTATGGAATAGCCACCTTCAGACAAATTATAGCAAGACATTCCAAAGAAGTAA >In-frame_TPD52_ENST00000518937_chr8_81083660_-_NECAB1_ENST00000417640_chr8_91813919_+_976nt ATGGACCGCGGCGAGCAAGATACTGAGGAGAGCAGACAAAAATGATGATGGAAAATTATCCTTTGAAGAATTCAAAGCATATTTTGCAGA TGGTGTTCTCAGTGGAGAAGAATTACACGAGCTTTTCCATACCATTGATACACATAATACTAATAATCTTGACACAGAAGAGCTATGTGA ATATTTTTCTCAGCACTTGGGCGAGTATGAGAATGTACTAGCAGCACTTGAAGACCTGAATCTTTCCATCCTGAAGGCAATGGGCAAAAC AAAGAAAGACTACCAAGAAGCCTCCAATTTGGAACAATTCGTAACTAGATTTTTATTGAAGGAAACCCTGAATCAGCTGCAGTCTCTCCA GAATTCCCTGGAATGTGCCATGGAAACTACTGAGGAGCAAACCCGTCAAGAAAGGCAAGGGCCAGCCAAGCCAGAAGTCCTGTCGATTCA ATGGCCTGGAAAACGATCAAGCCGCCGAGTCCAGAGACACAACAGCTTCTCCCCAAACAGCCCTCAGTTTAATGTCAGCGGTCCAGGCTT ATTAGAAGAAGACAACCAGTGGATGACCCAGATAAATAGACTCCAGAAATTAATTGATAGACTGGAAAAGAAGGATCTCAAACTCGAACC ACCAGAAGAAGAAATTATTGAAGGGAATACTAAATCTCACATCATGCTTGTGCAGCGGCAGATGTCTGTGATAGAAGAGGACCTGGAAGA ATTCCAGCTCGCTCTGAAACACTACGTGGAGAGTGCTTCCTCCCAAAGTGGATGCTTGCGTATTTCTATACAGAAGCTTTCAAATGAATC TCGCTACATGATCTATGAGTTCTGGGAGAATAGTAGTGTATGGAATAGCCACCTTCAGACAAATTATAGCAAGACATTCCAAAGAAGTAA |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_TPD52_ENST00000379096_chr8_81083660_-_NECAB1_ENST00000417640_chr8_91813919_+_4987nt GCGGGAGTCGCCGGCGGAGGCGAGGAGGAGCTCTGCGCGGCGCGGCGGGCGATCCGAGCCGGGACGGGCTGCAGGCGGGGGTGCTGCAGA GGACACGAGGCGGCGGGCTGGAGACATGGACCGCGGCGAGCAAGATACTGAGGAGAGCAGACAAAAATGATGATGGAAAATTATCCTTTG AAGAATTCAAAGCATATTTTGCAGATGGTGTTCTCAGTGGAGAAGAATTACACGAGCTTTTCCATACCATTGATACACATAATACTAATA ATCTTGACACAGAAGAGCTATGTGAATATTTTTCTCAGCACTTGGGCGAGTATGAGAATGTACTAGCAGCACTTGAAGACCTGAATCTTT CCATCCTGAAGGCAATGGGCAAAACAAAGAAAGACTACCAAGAAGCCTCCAATTTGGAACAATTCGTAACTAGATTTTTATTGAAGGAAA CCCTGAATCAGCTGCAGTCTCTCCAGAATTCCCTGGAATGTGCCATGGAAACTACTGAGGAGCAAACCCGTCAAGAAAGGCAAGGGCCAG CCAAGCCAGAAGTCCTGTCGATTCAATGGCCTGGAAAACGATCAAGCCGCCGAGTCCAGAGACACAACAGCTTCTCCCCAAACAGCCCTC AGTTTAATGTCAGCGGTCCAGGCTTATTAGAAGAAGACAACCAGTGGATGACCCAGATAAATAGACTCCAGAAATTAATTGATAGACTGG AAAAGAAGGATCTCAAACTCGAACCACCAGAAGAAGAAATTATTGAAGGGAATACTAAATCTCACATCATGCTTGTGCAGCGGCAGATGT CTGTGATAGAAGAGGACCTGGAAGAATTCCAGCTCGCTCTGAAACACTACGTGGAGAGTGCTTCCTCCCAAAGTGGATGCTTGCGTATTT CTATACAGAAGCTTTCAAATGAATCTCGCTACATGATCTATGAGTTCTGGGAGAATAGTAGTGTATGGAATAGCCACCTTCAGACAAATT ATAGCAAGACATTCCAAAGAAGTAATGTGGATTTCTTGGAAACTCCAGAACTCACATCTACAATGCTAGTTCCTGCTTCGTGGTGGATCC TGAACAACTAGATGTTCCTAGACATTTTCTTTATGGTTCCAAGTGCAAAACAGGTGTTCTTATCTAAAACGTCAATTAGAAAATTATCTG CGGTTGTTAATCTACTGTATATTTTTGTTTGGTATATTTACTAAGTGCACTCTTTCAAAACTTATTCTATAACTTTATCAATTCATGTGA ATTTTAGCTCAATTTTCAAAGTTCACTAATATTCTCAATATTTAATGCTAAATGCTTTGCTACATTGTAACTCACCTAAAACCTTTTAGT GACAAAATCCTAATATGTGGAAAAAAGCATATGCATAAAGGAATAATATTGTGAAAATGAATCTGTTATGATAAAGAAAAAATAAAGTGG AAACTTTTAGAGTATTACTTCATAGGGCAGATTTTGTAAACTGTCGTATACTGTAAAGGGTTAAATCAGCGTTTTGTGATTTTTAAGTAA CTGTGAGTGAAGTTTATTCTTCAACAATGTCTACTCCATCCCCAACCCAACTCACAGCCCTATGACTACTATCTTTGCATTAGTTAAAAA GTTAGTATATAGGCATCAAACAACCTTGGCTGTAACCTATAGAATCTCTATCCACGTATCAGGTTATAGACTGGTTTTTCAAAAGTGAAC AATCCTGTGATAAGTTGGAGTACCATTTAGTAATACAGCAACATTGTGTCATTTATTAGCATCATAATTCTTTGTTATGTAAGTTAAATA TATCAAGAAAGAAGAGACTGTTTGGAAAAATGTGGTTCAAGTTTTATGCTATATAGTTTTGGTATGCGATACAGACAGCTAACTTTTCTT ATGAAAAATACATATTTGCATGTAAACAATGATTTCAAAATACTTGAAAAATAAAATTTTAACCCAAATGAATAACTAAGAAATATAAAA CAAGCACAAAATCTTAGGGAAGTCATAAAATAGTAGTGAAAGTATTAGACAGAAGACATCTGTTTTCGAATTTCAACACTAGAATGACTA AAACTATCTACCTATAGAACTATCTGTAGATAGTATACTATCTACACTCTGCTCAACAAGCTCAGAAATTAAATATTTTTAATAATAAAA ATCTGTTCTGGTTATAAACCTTGCTAATGAAAATACAATACATATAAAAATGTATAGCCATGTTATTTTCTAGTATAAATTCCTTTGAAA CTATAAGTCTTTGAGGAAAATTATAAGGTAAAATTTTCCTGTTTTTCCCCCTTTGAAAAACTCAGGAAAAAAGGAAGATTGAACTAATAA AATTTTATTTCTTAAATATAAATTTGACCTAAAATATTTTCTCAAACTAATTCATGAAACAGCAACTTTTACCAATACCTTTGTATACTC TCAGTTCTCATTCAGTATAAATAAAATTTTAAAATCCTTTCATAGTTCTATTAGAAATAAGTAGTAAATTTTGATATATTGTACATACAC ACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTGTGTGCCTCTGGTCAACTCTAAGGATGACAGACACTGTGTAA CAACACCTGGGTCAACTCTTTTAATTTATATACAAAGCAAAGAACAACATTAATGGAGATGCACAATGATTATTCAAACAAGCTATATAT ATGTACAAAGGCAAACAGACACATAACAGTCTCTGCAGACTGATTGTATATAGTAAGAAAAGATCAAAAGACTTTAAAACCTAAATGACT TTTGACATACAAACTCTTCTTGAGAATGTTTGTTGTAAATGGTTTCAAAAATACAAATTATAGCCAATCAAAACATTGCTTTGGTTGGTG CATTTAAGTATCCAACTCAAAAAGCATATCAAATATTTTGGGTACTAGGCAGTTTCCAAAGTAGCATGGTAGTATTACTTGTTAAAAGGG TTCTGTTTTCATTAACAGTACTAAGTGGAAGGGATCTGCAGATTCCAAACTGGAATAAGCTCTATCATATTCTGAAACAAGAATTAGAAT GACTTGAGAACGGGCAAATAACAAAGCAAACCAATATAATTATATGGTCATTCTGACCCCAGCTCTTATACAAATTATACATGTATTTTT GTGTATGTTTGTGAGAGTTGTATGTATGTGAATGTGTGTGAGTGTGTATTCACATACACATATATACTGGAACCTATAGTAGAAAAGGAA ACTAGTAGGGCCAAAAAAAAAAAGAAAAAGAAAAAGAAAAAAGAAAAAAAAAGAAAAAACTGGGACCTAAGTATAAATATCTCATCCTAA AGTAAACAATAAGTTTATAGTTAACGAAGATTTTTTTCTATTTAAAACCCCATTTTCCTAAAGAACAAAGTAGTAAAATAAAAAAAAATT TAAAAAATTAAAAAATAAAAAAAAGAGGTCACTAAAAGACCAAGATGGGAAACGTAACATGGAATACAAGCTTGAATCTGGGAAACAAGC TCAAAAAACAGTGAAAAAAAAAGTACTGGTTTAGGAGTTCAAAATTCAGTGAAACAAACTTTTTGCCAATAGACCTAGGGATCTAAGAAA TAGAATTAGGGAGAGTTTACACTTACTTACCTATATATCAGCAGATTTTTCTGGAAGAAACCCTTTTTTTTTTTTTTTTTAAACAGTAAC ATCCAGAGTGACAAATTGCAGGAGATTTAATGTATAAAATTTCTAGGAATTAAAAGCTTAAACCCAAAAATTGTTCATCCATATATAAGA AATTATCGAATTAAAACTTAATGTATGTCAATTATTTTCAAATGTCTAAATTCCTTTGGAAATAAAAATATCAGTTTTACTTTGAAATTG CTCAACTTCTGCTATTCATATGGTCTGATTAGTGACATAAGTAGCAGCCGTTTTTCAACTTCAGTTTCATTCACTACCATTGTTTCCAAA TTATCAATCTCTGCTAGTAATTATGAATTTAAGACCATATTATTATCAAAAACCTAGAGACCAATCATATATCTGAAAAGAAATACCCAT TAAAAATTCTGCCTCCTGTTTATTGAGAACTATGCATTGAACATTCTGAATCATTCTAAGCCTCTGGAGAGACTGTAATGATCCATTCAT GAGCTGGTATGAAATCAGTGGGAAGCAGAACAACAGAAGGAACTTTAAAAGCAACAAGCAATTATGTACCATATATACACTGTAGCAAAT ATTTTATATTTGAGAGTCTTTACAGCTTACATTTCCATTCCATTATTACAAGTGATGAAAAACAAAAAATTGCAAGTAGTATGCAAATTA TAAATATACAGTCTTCCCACTTCACTAACCAAATTCCTACTTTCCAGTGTTACTTCCCAATTTATGCAGGAAACCTCCTGCAAAGCTGAA ACTGATTAGAAAATTCTTTATATTTTAAAATAGCTCTTTCTCATTTTTAGAGAAGTCAAATAGCCAACCATCAAAATTAAGAATAAATTG AATTGTCACAGTCCATTACAGTTATTGTTGCTAGATCCACCTCATTTGCAGATGTCCAAACTTAAATTCATCTGTTCTTAAAATGCTACT TAAAACTTTGGTTGTTTTCCTGTAATATAAAAGAAAAAGTTAATTTATCAATTGATTGAATACAGTTTTTACTAATTAGTTTATCAAACC AAATACTGTGAACGTACCAGGTGTTTACAGATTTAAATGCATGTTACCATAGAAACTATTAAAGTAACTAGAACTGTCAAATAACAAAAC GGCTCATGTTTTTAAAATATATGTAACTCATTTTAAAATATATTAAATTGTATTCCAAACCTGTTCTTCTGTTTCTGTGGCACCTAGGTT TAAAATATGTATTAATGTGTAAATCACAAGTAAAATGAATTCTAATGTACAAGTTTGTTTTAAAAAGTGTATGTCAAGCTTTTATTTACA >In-frame_TPD52_ENST00000518937_chr8_81083660_-_NECAB1_ENST00000417640_chr8_91813919_+_5088nt AGGTCGACCGGGTCAGGTGGTTGGGTGACGCCCCAGGAAAGCGCTCCAGGCCGAGGGCGGGCGGCGCCGCCGCGCCCGACGCCTCTGGGG GTGGGGACTTCGCGGGAGTCGCCGGCGGAGGCGAGGAGGAGCTCTGCGCGGCGCGGCGGGCGATCCGAGCCGGGACGGGCTGCAGGCGGG GGTGCTGCAGAGGACACGAGGCGGCGGGCTGGAGACATGGACCGCGGCGAGCAAGATACTGAGGAGAGCAGACAAAAATGATGATGGAAA ATTATCCTTTGAAGAATTCAAAGCATATTTTGCAGATGGTGTTCTCAGTGGAGAAGAATTACACGAGCTTTTCCATACCATTGATACACA TAATACTAATAATCTTGACACAGAAGAGCTATGTGAATATTTTTCTCAGCACTTGGGCGAGTATGAGAATGTACTAGCAGCACTTGAAGA CCTGAATCTTTCCATCCTGAAGGCAATGGGCAAAACAAAGAAAGACTACCAAGAAGCCTCCAATTTGGAACAATTCGTAACTAGATTTTT ATTGAAGGAAACCCTGAATCAGCTGCAGTCTCTCCAGAATTCCCTGGAATGTGCCATGGAAACTACTGAGGAGCAAACCCGTCAAGAAAG GCAAGGGCCAGCCAAGCCAGAAGTCCTGTCGATTCAATGGCCTGGAAAACGATCAAGCCGCCGAGTCCAGAGACACAACAGCTTCTCCCC AAACAGCCCTCAGTTTAATGTCAGCGGTCCAGGCTTATTAGAAGAAGACAACCAGTGGATGACCCAGATAAATAGACTCCAGAAATTAAT TGATAGACTGGAAAAGAAGGATCTCAAACTCGAACCACCAGAAGAAGAAATTATTGAAGGGAATACTAAATCTCACATCATGCTTGTGCA GCGGCAGATGTCTGTGATAGAAGAGGACCTGGAAGAATTCCAGCTCGCTCTGAAACACTACGTGGAGAGTGCTTCCTCCCAAAGTGGATG CTTGCGTATTTCTATACAGAAGCTTTCAAATGAATCTCGCTACATGATCTATGAGTTCTGGGAGAATAGTAGTGTATGGAATAGCCACCT TCAGACAAATTATAGCAAGACATTCCAAAGAAGTAATGTGGATTTCTTGGAAACTCCAGAACTCACATCTACAATGCTAGTTCCTGCTTC GTGGTGGATCCTGAACAACTAGATGTTCCTAGACATTTTCTTTATGGTTCCAAGTGCAAAACAGGTGTTCTTATCTAAAACGTCAATTAG AAAATTATCTGCGGTTGTTAATCTACTGTATATTTTTGTTTGGTATATTTACTAAGTGCACTCTTTCAAAACTTATTCTATAACTTTATC AATTCATGTGAATTTTAGCTCAATTTTCAAAGTTCACTAATATTCTCAATATTTAATGCTAAATGCTTTGCTACATTGTAACTCACCTAA AACCTTTTAGTGACAAAATCCTAATATGTGGAAAAAAGCATATGCATAAAGGAATAATATTGTGAAAATGAATCTGTTATGATAAAGAAA AAATAAAGTGGAAACTTTTAGAGTATTACTTCATAGGGCAGATTTTGTAAACTGTCGTATACTGTAAAGGGTTAAATCAGCGTTTTGTGA TTTTTAAGTAACTGTGAGTGAAGTTTATTCTTCAACAATGTCTACTCCATCCCCAACCCAACTCACAGCCCTATGACTACTATCTTTGCA TTAGTTAAAAAGTTAGTATATAGGCATCAAACAACCTTGGCTGTAACCTATAGAATCTCTATCCACGTATCAGGTTATAGACTGGTTTTT CAAAAGTGAACAATCCTGTGATAAGTTGGAGTACCATTTAGTAATACAGCAACATTGTGTCATTTATTAGCATCATAATTCTTTGTTATG TAAGTTAAATATATCAAGAAAGAAGAGACTGTTTGGAAAAATGTGGTTCAAGTTTTATGCTATATAGTTTTGGTATGCGATACAGACAGC TAACTTTTCTTATGAAAAATACATATTTGCATGTAAACAATGATTTCAAAATACTTGAAAAATAAAATTTTAACCCAAATGAATAACTAA GAAATATAAAACAAGCACAAAATCTTAGGGAAGTCATAAAATAGTAGTGAAAGTATTAGACAGAAGACATCTGTTTTCGAATTTCAACAC TAGAATGACTAAAACTATCTACCTATAGAACTATCTGTAGATAGTATACTATCTACACTCTGCTCAACAAGCTCAGAAATTAAATATTTT TAATAATAAAAATCTGTTCTGGTTATAAACCTTGCTAATGAAAATACAATACATATAAAAATGTATAGCCATGTTATTTTCTAGTATAAA TTCCTTTGAAACTATAAGTCTTTGAGGAAAATTATAAGGTAAAATTTTCCTGTTTTTCCCCCTTTGAAAAACTCAGGAAAAAAGGAAGAT TGAACTAATAAAATTTTATTTCTTAAATATAAATTTGACCTAAAATATTTTCTCAAACTAATTCATGAAACAGCAACTTTTACCAATACC TTTGTATACTCTCAGTTCTCATTCAGTATAAATAAAATTTTAAAATCCTTTCATAGTTCTATTAGAAATAAGTAGTAAATTTTGATATAT TGTACATACACACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTGTGTGCCTCTGGTCAACTCTAAGGATGACAG ACACTGTGTAACAACACCTGGGTCAACTCTTTTAATTTATATACAAAGCAAAGAACAACATTAATGGAGATGCACAATGATTATTCAAAC AAGCTATATATATGTACAAAGGCAAACAGACACATAACAGTCTCTGCAGACTGATTGTATATAGTAAGAAAAGATCAAAAGACTTTAAAA CCTAAATGACTTTTGACATACAAACTCTTCTTGAGAATGTTTGTTGTAAATGGTTTCAAAAATACAAATTATAGCCAATCAAAACATTGC TTTGGTTGGTGCATTTAAGTATCCAACTCAAAAAGCATATCAAATATTTTGGGTACTAGGCAGTTTCCAAAGTAGCATGGTAGTATTACT TGTTAAAAGGGTTCTGTTTTCATTAACAGTACTAAGTGGAAGGGATCTGCAGATTCCAAACTGGAATAAGCTCTATCATATTCTGAAACA AGAATTAGAATGACTTGAGAACGGGCAAATAACAAAGCAAACCAATATAATTATATGGTCATTCTGACCCCAGCTCTTATACAAATTATA CATGTATTTTTGTGTATGTTTGTGAGAGTTGTATGTATGTGAATGTGTGTGAGTGTGTATTCACATACACATATATACTGGAACCTATAG TAGAAAAGGAAACTAGTAGGGCCAAAAAAAAAAAGAAAAAGAAAAAGAAAAAAGAAAAAAAAAGAAAAAACTGGGACCTAAGTATAAATA TCTCATCCTAAAGTAAACAATAAGTTTATAGTTAACGAAGATTTTTTTCTATTTAAAACCCCATTTTCCTAAAGAACAAAGTAGTAAAAT AAAAAAAAATTTAAAAAATTAAAAAATAAAAAAAAGAGGTCACTAAAAGACCAAGATGGGAAACGTAACATGGAATACAAGCTTGAATCT GGGAAACAAGCTCAAAAAACAGTGAAAAAAAAAGTACTGGTTTAGGAGTTCAAAATTCAGTGAAACAAACTTTTTGCCAATAGACCTAGG GATCTAAGAAATAGAATTAGGGAGAGTTTACACTTACTTACCTATATATCAGCAGATTTTTCTGGAAGAAACCCTTTTTTTTTTTTTTTT TAAACAGTAACATCCAGAGTGACAAATTGCAGGAGATTTAATGTATAAAATTTCTAGGAATTAAAAGCTTAAACCCAAAAATTGTTCATC CATATATAAGAAATTATCGAATTAAAACTTAATGTATGTCAATTATTTTCAAATGTCTAAATTCCTTTGGAAATAAAAATATCAGTTTTA CTTTGAAATTGCTCAACTTCTGCTATTCATATGGTCTGATTAGTGACATAAGTAGCAGCCGTTTTTCAACTTCAGTTTCATTCACTACCA TTGTTTCCAAATTATCAATCTCTGCTAGTAATTATGAATTTAAGACCATATTATTATCAAAAACCTAGAGACCAATCATATATCTGAAAA GAAATACCCATTAAAAATTCTGCCTCCTGTTTATTGAGAACTATGCATTGAACATTCTGAATCATTCTAAGCCTCTGGAGAGACTGTAAT GATCCATTCATGAGCTGGTATGAAATCAGTGGGAAGCAGAACAACAGAAGGAACTTTAAAAGCAACAAGCAATTATGTACCATATATACA CTGTAGCAAATATTTTATATTTGAGAGTCTTTACAGCTTACATTTCCATTCCATTATTACAAGTGATGAAAAACAAAAAATTGCAAGTAG TATGCAAATTATAAATATACAGTCTTCCCACTTCACTAACCAAATTCCTACTTTCCAGTGTTACTTCCCAATTTATGCAGGAAACCTCCT GCAAAGCTGAAACTGATTAGAAAATTCTTTATATTTTAAAATAGCTCTTTCTCATTTTTAGAGAAGTCAAATAGCCAACCATCAAAATTA AGAATAAATTGAATTGTCACAGTCCATTACAGTTATTGTTGCTAGATCCACCTCATTTGCAGATGTCCAAACTTAAATTCATCTGTTCTT AAAATGCTACTTAAAACTTTGGTTGTTTTCCTGTAATATAAAAGAAAAAGTTAATTTATCAATTGATTGAATACAGTTTTTACTAATTAG TTTATCAAACCAAATACTGTGAACGTACCAGGTGTTTACAGATTTAAATGCATGTTACCATAGAAACTATTAAAGTAACTAGAACTGTCA AATAACAAAACGGCTCATGTTTTTAAAATATATGTAACTCATTTTAAAATATATTAAATTGTATTCCAAACCTGTTCTTCTGTTTCTGTG GCACCTAGGTTTAAAATATGTATTAATGTGTAAATCACAAGTAAAATGAATTCTAATGTACAAGTTTGTTTTAAAAAGTGTATGTCAAGC |
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FusionGenePPI for TPD52_NECAB1 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
TPD52 | MAL2, TPD52, TPD52L1, TPD52L2, SAR1A, SEPHS1, YWHAQ, BAG3, SOCS2, SENP2, SRPK2, ARPC1B, PDIA6, PRKACA, AARS, CACYBP, PDCD4, PDLIM5, NXF1, MRPS2, CALU, CLIC4, DUT, ENO2, EZR, NACA2, PAIP1, PHB, PTGES3, UCHL3, HIST1H2BG, DYNC1H1, HNRNPU, TSNAX, MTX2, THOC2, CDH1, PPM1H, MRPS11, MEAF6, ZBTB48, ZNF169, CTNNA3, ZNF133, SOD1 | NECAB1 | APP, NECAB3, NECAB2, CIRH1A, IP6K3, KANSL2, MPRIP, RNF138, MCRS1, CCDC6, RAI14 |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for TPD52_NECAB1 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for TPD52_NECAB1 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | TPD52 | C0033578 | Prostatic Neoplasms | 1 | CTD_human |