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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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Fusion gene ID: 39201

FusionGeneSummary for TPD52_NECAB1

check button Fusion gene summary
Fusion gene informationFusion gene name: TPD52_NECAB1
Fusion gene ID: 39201
HgeneTgene
Gene symbol

TPD52

NECAB1

Gene ID

7163

64168

Gene nametumor protein D52N-terminal EF-hand calcium binding protein 1
SynonymsD52|N8L|PC-1|PrLZ|hD52EFCBP1|STIP-1
Cytomap

8q21.13

8q21.3

Type of geneprotein-codingprotein-coding
Descriptiontumor protein D52prostate and colon associated proteinprostate leucine zipperprotein N8N-terminal EF-hand calcium-binding protein 1EF-hand calcium-binding protein 1neuronal calcium binding proteinneuronal calcium-binding protein 1synaptotagmin interacting protein 1
Modification date2018052720180523
UniProtAcc

P55327

Q8N987

Ensembl transtripts involved in fusion geneENST00000537855, ENST00000379096, 
ENST00000518937, ENST00000519303, 
ENST00000517427, ENST00000520527, 
ENST00000448733, ENST00000379097, 
ENST00000523395, 
ENST00000417640, 
ENST00000521954, ENST00000522820, 
ENST00000521366, 
Fusion gene scores* DoF score9 X 4 X 5=1804 X 2 X 2=16
# samples 94
** MAII scorelog2(9/180*10)=-1
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(4/16*10)=1.32192809488736
effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs).
DoF>8 and MAII>0
Context

PubMed: TPD52 [Title/Abstract] AND NECAB1 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGALDBRCATCGA-A8-A079-01ATPD52chr8

81083660

-NECAB1chr8

91813919

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
intron-3CDSENST00000537855ENST00000417640TPD52chr8

81083660

-NECAB1chr8

91813919

+
intron-3UTRENST00000537855ENST00000521954TPD52chr8

81083660

-NECAB1chr8

91813919

+
intron-intronENST00000537855ENST00000522820TPD52chr8

81083660

-NECAB1chr8

91813919

+
intron-intronENST00000537855ENST00000521366TPD52chr8

81083660

-NECAB1chr8

91813919

+
In-frameENST00000379096ENST00000417640TPD52chr8

81083660

-NECAB1chr8

91813919

+
5CDS-3UTRENST00000379096ENST00000521954TPD52chr8

81083660

-NECAB1chr8

91813919

+
5CDS-intronENST00000379096ENST00000522820TPD52chr8

81083660

-NECAB1chr8

91813919

+
5CDS-intronENST00000379096ENST00000521366TPD52chr8

81083660

-NECAB1chr8

91813919

+
In-frameENST00000518937ENST00000417640TPD52chr8

81083660

-NECAB1chr8

91813919

+
5CDS-3UTRENST00000518937ENST00000521954TPD52chr8

81083660

-NECAB1chr8

91813919

+
5CDS-intronENST00000518937ENST00000522820TPD52chr8

81083660

-NECAB1chr8

91813919

+
5CDS-intronENST00000518937ENST00000521366TPD52chr8

81083660

-NECAB1chr8

91813919

+
intron-3CDSENST00000519303ENST00000417640TPD52chr8

81083660

-NECAB1chr8

91813919

+
intron-3UTRENST00000519303ENST00000521954TPD52chr8

81083660

-NECAB1chr8

91813919

+
intron-intronENST00000519303ENST00000522820TPD52chr8

81083660

-NECAB1chr8

91813919

+
intron-intronENST00000519303ENST00000521366TPD52chr8

81083660

-NECAB1chr8

91813919

+
intron-3CDSENST00000517427ENST00000417640TPD52chr8

81083660

-NECAB1chr8

91813919

+
intron-3UTRENST00000517427ENST00000521954TPD52chr8

81083660

-NECAB1chr8

91813919

+
intron-intronENST00000517427ENST00000522820TPD52chr8

81083660

-NECAB1chr8

91813919

+
intron-intronENST00000517427ENST00000521366TPD52chr8

81083660

-NECAB1chr8

91813919

+
intron-3CDSENST00000520527ENST00000417640TPD52chr8

81083660

-NECAB1chr8

91813919

+
intron-3UTRENST00000520527ENST00000521954TPD52chr8

81083660

-NECAB1chr8

91813919

+
intron-intronENST00000520527ENST00000522820TPD52chr8

81083660

-NECAB1chr8

91813919

+
intron-intronENST00000520527ENST00000521366TPD52chr8

81083660

-NECAB1chr8

91813919

+
intron-3CDSENST00000448733ENST00000417640TPD52chr8

81083660

-NECAB1chr8

91813919

+
intron-3UTRENST00000448733ENST00000521954TPD52chr8

81083660

-NECAB1chr8

91813919

+
intron-intronENST00000448733ENST00000522820TPD52chr8

81083660

-NECAB1chr8

91813919

+
intron-intronENST00000448733ENST00000521366TPD52chr8

81083660

-NECAB1chr8

91813919

+
intron-3CDSENST00000379097ENST00000417640TPD52chr8

81083660

-NECAB1chr8

91813919

+
intron-3UTRENST00000379097ENST00000521954TPD52chr8

81083660

-NECAB1chr8

91813919

+
intron-intronENST00000379097ENST00000522820TPD52chr8

81083660

-NECAB1chr8

91813919

+
intron-intronENST00000379097ENST00000521366TPD52chr8

81083660

-NECAB1chr8

91813919

+
intron-3CDSENST00000523395ENST00000417640TPD52chr8

81083660

-NECAB1chr8

91813919

+
intron-3UTRENST00000523395ENST00000521954TPD52chr8

81083660

-NECAB1chr8

91813919

+
intron-intronENST00000523395ENST00000522820TPD52chr8

81083660

-NECAB1chr8

91813919

+
intron-intronENST00000523395ENST00000521366TPD52chr8

81083660

-NECAB1chr8

91813919

+

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FusionProtFeatures for TPD52_NECAB1


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
TPD52

P55327

NECAB1

Q8N987


check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


Top

FusionGeneSequence for TPD52_NECAB1


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.
>In-frame_TPD52_ENST00000379096_chr8_81083660_-_NECAB1_ENST00000417640_chr8_91813919_+_325aa
MDRGEQDTEESRQKXXWKIILXRIQSIFCRWCSQWRRITRAFPYHXYTXYXXSXHRRAMXIFFSALGRVXECTSSTXRPESFHPEGNGQN
KERLPRSLQFGTIRNXIFIEGNPESAAVSPEFPGMCHGNYXGANPSRKARASQARSPVDSMAWKTIKPPSPETQQLLPKQPSVXCQRSRL
IRRRQPVDDPDKXTPEINXXTGKEGSQTRTTRRRNYXREYXISHHACAAADVCDRRGPGRIPARSETLRGECFLPKWMLAYFYTEAFKXI

>In-frame_TPD52_ENST00000518937_chr8_81083660_-_NECAB1_ENST00000417640_chr8_91813919_+_325aa
MDRGEQDTEESRQKXXWKIILXRIQSIFCRWCSQWRRITRAFPYHXYTXYXXSXHRRAMXIFFSALGRVXECTSSTXRPESFHPEGNGQN
KERLPRSLQFGTIRNXIFIEGNPESAAVSPEFPGMCHGNYXGANPSRKARASQARSPVDSMAWKTIKPPSPETQQLLPKQPSVXCQRSRL
IRRRQPVDDPDKXTPEINXXTGKEGSQTRTTRRRNYXREYXISHHACAAADVCDRRGPGRIPARSETLRGECFLPKWMLAYFYTEAFKXI


* Fusion transcript sequences (only coding sequence (CDS) region).
>In-frame_TPD52_ENST00000379096_chr8_81083660_-_NECAB1_ENST00000417640_chr8_91813919_+_976nt
ATGGACCGCGGCGAGCAAGATACTGAGGAGAGCAGACAAAAATGATGATGGAAAATTATCCTTTGAAGAATTCAAAGCATATTTTGCAGA
TGGTGTTCTCAGTGGAGAAGAATTACACGAGCTTTTCCATACCATTGATACACATAATACTAATAATCTTGACACAGAAGAGCTATGTGA
ATATTTTTCTCAGCACTTGGGCGAGTATGAGAATGTACTAGCAGCACTTGAAGACCTGAATCTTTCCATCCTGAAGGCAATGGGCAAAAC
AAAGAAAGACTACCAAGAAGCCTCCAATTTGGAACAATTCGTAACTAGATTTTTATTGAAGGAAACCCTGAATCAGCTGCAGTCTCTCCA
GAATTCCCTGGAATGTGCCATGGAAACTACTGAGGAGCAAACCCGTCAAGAAAGGCAAGGGCCAGCCAAGCCAGAAGTCCTGTCGATTCA
ATGGCCTGGAAAACGATCAAGCCGCCGAGTCCAGAGACACAACAGCTTCTCCCCAAACAGCCCTCAGTTTAATGTCAGCGGTCCAGGCTT
ATTAGAAGAAGACAACCAGTGGATGACCCAGATAAATAGACTCCAGAAATTAATTGATAGACTGGAAAAGAAGGATCTCAAACTCGAACC
ACCAGAAGAAGAAATTATTGAAGGGAATACTAAATCTCACATCATGCTTGTGCAGCGGCAGATGTCTGTGATAGAAGAGGACCTGGAAGA
ATTCCAGCTCGCTCTGAAACACTACGTGGAGAGTGCTTCCTCCCAAAGTGGATGCTTGCGTATTTCTATACAGAAGCTTTCAAATGAATC
TCGCTACATGATCTATGAGTTCTGGGAGAATAGTAGTGTATGGAATAGCCACCTTCAGACAAATTATAGCAAGACATTCCAAAGAAGTAA

>In-frame_TPD52_ENST00000518937_chr8_81083660_-_NECAB1_ENST00000417640_chr8_91813919_+_976nt
ATGGACCGCGGCGAGCAAGATACTGAGGAGAGCAGACAAAAATGATGATGGAAAATTATCCTTTGAAGAATTCAAAGCATATTTTGCAGA
TGGTGTTCTCAGTGGAGAAGAATTACACGAGCTTTTCCATACCATTGATACACATAATACTAATAATCTTGACACAGAAGAGCTATGTGA
ATATTTTTCTCAGCACTTGGGCGAGTATGAGAATGTACTAGCAGCACTTGAAGACCTGAATCTTTCCATCCTGAAGGCAATGGGCAAAAC
AAAGAAAGACTACCAAGAAGCCTCCAATTTGGAACAATTCGTAACTAGATTTTTATTGAAGGAAACCCTGAATCAGCTGCAGTCTCTCCA
GAATTCCCTGGAATGTGCCATGGAAACTACTGAGGAGCAAACCCGTCAAGAAAGGCAAGGGCCAGCCAAGCCAGAAGTCCTGTCGATTCA
ATGGCCTGGAAAACGATCAAGCCGCCGAGTCCAGAGACACAACAGCTTCTCCCCAAACAGCCCTCAGTTTAATGTCAGCGGTCCAGGCTT
ATTAGAAGAAGACAACCAGTGGATGACCCAGATAAATAGACTCCAGAAATTAATTGATAGACTGGAAAAGAAGGATCTCAAACTCGAACC
ACCAGAAGAAGAAATTATTGAAGGGAATACTAAATCTCACATCATGCTTGTGCAGCGGCAGATGTCTGTGATAGAAGAGGACCTGGAAGA
ATTCCAGCTCGCTCTGAAACACTACGTGGAGAGTGCTTCCTCCCAAAGTGGATGCTTGCGTATTTCTATACAGAAGCTTTCAAATGAATC
TCGCTACATGATCTATGAGTTCTGGGAGAATAGTAGTGTATGGAATAGCCACCTTCAGACAAATTATAGCAAGACATTCCAAAGAAGTAA


* Fusion transcript sequences (Full-length transcript).
>In-frame_TPD52_ENST00000379096_chr8_81083660_-_NECAB1_ENST00000417640_chr8_91813919_+_4987nt
GCGGGAGTCGCCGGCGGAGGCGAGGAGGAGCTCTGCGCGGCGCGGCGGGCGATCCGAGCCGGGACGGGCTGCAGGCGGGGGTGCTGCAGA
GGACACGAGGCGGCGGGCTGGAGACATGGACCGCGGCGAGCAAGATACTGAGGAGAGCAGACAAAAATGATGATGGAAAATTATCCTTTG
AAGAATTCAAAGCATATTTTGCAGATGGTGTTCTCAGTGGAGAAGAATTACACGAGCTTTTCCATACCATTGATACACATAATACTAATA
ATCTTGACACAGAAGAGCTATGTGAATATTTTTCTCAGCACTTGGGCGAGTATGAGAATGTACTAGCAGCACTTGAAGACCTGAATCTTT
CCATCCTGAAGGCAATGGGCAAAACAAAGAAAGACTACCAAGAAGCCTCCAATTTGGAACAATTCGTAACTAGATTTTTATTGAAGGAAA
CCCTGAATCAGCTGCAGTCTCTCCAGAATTCCCTGGAATGTGCCATGGAAACTACTGAGGAGCAAACCCGTCAAGAAAGGCAAGGGCCAG
CCAAGCCAGAAGTCCTGTCGATTCAATGGCCTGGAAAACGATCAAGCCGCCGAGTCCAGAGACACAACAGCTTCTCCCCAAACAGCCCTC
AGTTTAATGTCAGCGGTCCAGGCTTATTAGAAGAAGACAACCAGTGGATGACCCAGATAAATAGACTCCAGAAATTAATTGATAGACTGG
AAAAGAAGGATCTCAAACTCGAACCACCAGAAGAAGAAATTATTGAAGGGAATACTAAATCTCACATCATGCTTGTGCAGCGGCAGATGT
CTGTGATAGAAGAGGACCTGGAAGAATTCCAGCTCGCTCTGAAACACTACGTGGAGAGTGCTTCCTCCCAAAGTGGATGCTTGCGTATTT
CTATACAGAAGCTTTCAAATGAATCTCGCTACATGATCTATGAGTTCTGGGAGAATAGTAGTGTATGGAATAGCCACCTTCAGACAAATT
ATAGCAAGACATTCCAAAGAAGTAATGTGGATTTCTTGGAAACTCCAGAACTCACATCTACAATGCTAGTTCCTGCTTCGTGGTGGATCC
TGAACAACTAGATGTTCCTAGACATTTTCTTTATGGTTCCAAGTGCAAAACAGGTGTTCTTATCTAAAACGTCAATTAGAAAATTATCTG
CGGTTGTTAATCTACTGTATATTTTTGTTTGGTATATTTACTAAGTGCACTCTTTCAAAACTTATTCTATAACTTTATCAATTCATGTGA
ATTTTAGCTCAATTTTCAAAGTTCACTAATATTCTCAATATTTAATGCTAAATGCTTTGCTACATTGTAACTCACCTAAAACCTTTTAGT
GACAAAATCCTAATATGTGGAAAAAAGCATATGCATAAAGGAATAATATTGTGAAAATGAATCTGTTATGATAAAGAAAAAATAAAGTGG
AAACTTTTAGAGTATTACTTCATAGGGCAGATTTTGTAAACTGTCGTATACTGTAAAGGGTTAAATCAGCGTTTTGTGATTTTTAAGTAA
CTGTGAGTGAAGTTTATTCTTCAACAATGTCTACTCCATCCCCAACCCAACTCACAGCCCTATGACTACTATCTTTGCATTAGTTAAAAA
GTTAGTATATAGGCATCAAACAACCTTGGCTGTAACCTATAGAATCTCTATCCACGTATCAGGTTATAGACTGGTTTTTCAAAAGTGAAC
AATCCTGTGATAAGTTGGAGTACCATTTAGTAATACAGCAACATTGTGTCATTTATTAGCATCATAATTCTTTGTTATGTAAGTTAAATA
TATCAAGAAAGAAGAGACTGTTTGGAAAAATGTGGTTCAAGTTTTATGCTATATAGTTTTGGTATGCGATACAGACAGCTAACTTTTCTT
ATGAAAAATACATATTTGCATGTAAACAATGATTTCAAAATACTTGAAAAATAAAATTTTAACCCAAATGAATAACTAAGAAATATAAAA
CAAGCACAAAATCTTAGGGAAGTCATAAAATAGTAGTGAAAGTATTAGACAGAAGACATCTGTTTTCGAATTTCAACACTAGAATGACTA
AAACTATCTACCTATAGAACTATCTGTAGATAGTATACTATCTACACTCTGCTCAACAAGCTCAGAAATTAAATATTTTTAATAATAAAA
ATCTGTTCTGGTTATAAACCTTGCTAATGAAAATACAATACATATAAAAATGTATAGCCATGTTATTTTCTAGTATAAATTCCTTTGAAA
CTATAAGTCTTTGAGGAAAATTATAAGGTAAAATTTTCCTGTTTTTCCCCCTTTGAAAAACTCAGGAAAAAAGGAAGATTGAACTAATAA
AATTTTATTTCTTAAATATAAATTTGACCTAAAATATTTTCTCAAACTAATTCATGAAACAGCAACTTTTACCAATACCTTTGTATACTC
TCAGTTCTCATTCAGTATAAATAAAATTTTAAAATCCTTTCATAGTTCTATTAGAAATAAGTAGTAAATTTTGATATATTGTACATACAC
ACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTGTGTGCCTCTGGTCAACTCTAAGGATGACAGACACTGTGTAA
CAACACCTGGGTCAACTCTTTTAATTTATATACAAAGCAAAGAACAACATTAATGGAGATGCACAATGATTATTCAAACAAGCTATATAT
ATGTACAAAGGCAAACAGACACATAACAGTCTCTGCAGACTGATTGTATATAGTAAGAAAAGATCAAAAGACTTTAAAACCTAAATGACT
TTTGACATACAAACTCTTCTTGAGAATGTTTGTTGTAAATGGTTTCAAAAATACAAATTATAGCCAATCAAAACATTGCTTTGGTTGGTG
CATTTAAGTATCCAACTCAAAAAGCATATCAAATATTTTGGGTACTAGGCAGTTTCCAAAGTAGCATGGTAGTATTACTTGTTAAAAGGG
TTCTGTTTTCATTAACAGTACTAAGTGGAAGGGATCTGCAGATTCCAAACTGGAATAAGCTCTATCATATTCTGAAACAAGAATTAGAAT
GACTTGAGAACGGGCAAATAACAAAGCAAACCAATATAATTATATGGTCATTCTGACCCCAGCTCTTATACAAATTATACATGTATTTTT
GTGTATGTTTGTGAGAGTTGTATGTATGTGAATGTGTGTGAGTGTGTATTCACATACACATATATACTGGAACCTATAGTAGAAAAGGAA
ACTAGTAGGGCCAAAAAAAAAAAGAAAAAGAAAAAGAAAAAAGAAAAAAAAAGAAAAAACTGGGACCTAAGTATAAATATCTCATCCTAA
AGTAAACAATAAGTTTATAGTTAACGAAGATTTTTTTCTATTTAAAACCCCATTTTCCTAAAGAACAAAGTAGTAAAATAAAAAAAAATT
TAAAAAATTAAAAAATAAAAAAAAGAGGTCACTAAAAGACCAAGATGGGAAACGTAACATGGAATACAAGCTTGAATCTGGGAAACAAGC
TCAAAAAACAGTGAAAAAAAAAGTACTGGTTTAGGAGTTCAAAATTCAGTGAAACAAACTTTTTGCCAATAGACCTAGGGATCTAAGAAA
TAGAATTAGGGAGAGTTTACACTTACTTACCTATATATCAGCAGATTTTTCTGGAAGAAACCCTTTTTTTTTTTTTTTTTAAACAGTAAC
ATCCAGAGTGACAAATTGCAGGAGATTTAATGTATAAAATTTCTAGGAATTAAAAGCTTAAACCCAAAAATTGTTCATCCATATATAAGA
AATTATCGAATTAAAACTTAATGTATGTCAATTATTTTCAAATGTCTAAATTCCTTTGGAAATAAAAATATCAGTTTTACTTTGAAATTG
CTCAACTTCTGCTATTCATATGGTCTGATTAGTGACATAAGTAGCAGCCGTTTTTCAACTTCAGTTTCATTCACTACCATTGTTTCCAAA
TTATCAATCTCTGCTAGTAATTATGAATTTAAGACCATATTATTATCAAAAACCTAGAGACCAATCATATATCTGAAAAGAAATACCCAT
TAAAAATTCTGCCTCCTGTTTATTGAGAACTATGCATTGAACATTCTGAATCATTCTAAGCCTCTGGAGAGACTGTAATGATCCATTCAT
GAGCTGGTATGAAATCAGTGGGAAGCAGAACAACAGAAGGAACTTTAAAAGCAACAAGCAATTATGTACCATATATACACTGTAGCAAAT
ATTTTATATTTGAGAGTCTTTACAGCTTACATTTCCATTCCATTATTACAAGTGATGAAAAACAAAAAATTGCAAGTAGTATGCAAATTA
TAAATATACAGTCTTCCCACTTCACTAACCAAATTCCTACTTTCCAGTGTTACTTCCCAATTTATGCAGGAAACCTCCTGCAAAGCTGAA
ACTGATTAGAAAATTCTTTATATTTTAAAATAGCTCTTTCTCATTTTTAGAGAAGTCAAATAGCCAACCATCAAAATTAAGAATAAATTG
AATTGTCACAGTCCATTACAGTTATTGTTGCTAGATCCACCTCATTTGCAGATGTCCAAACTTAAATTCATCTGTTCTTAAAATGCTACT
TAAAACTTTGGTTGTTTTCCTGTAATATAAAAGAAAAAGTTAATTTATCAATTGATTGAATACAGTTTTTACTAATTAGTTTATCAAACC
AAATACTGTGAACGTACCAGGTGTTTACAGATTTAAATGCATGTTACCATAGAAACTATTAAAGTAACTAGAACTGTCAAATAACAAAAC
GGCTCATGTTTTTAAAATATATGTAACTCATTTTAAAATATATTAAATTGTATTCCAAACCTGTTCTTCTGTTTCTGTGGCACCTAGGTT
TAAAATATGTATTAATGTGTAAATCACAAGTAAAATGAATTCTAATGTACAAGTTTGTTTTAAAAAGTGTATGTCAAGCTTTTATTTACA

>In-frame_TPD52_ENST00000518937_chr8_81083660_-_NECAB1_ENST00000417640_chr8_91813919_+_5088nt
AGGTCGACCGGGTCAGGTGGTTGGGTGACGCCCCAGGAAAGCGCTCCAGGCCGAGGGCGGGCGGCGCCGCCGCGCCCGACGCCTCTGGGG
GTGGGGACTTCGCGGGAGTCGCCGGCGGAGGCGAGGAGGAGCTCTGCGCGGCGCGGCGGGCGATCCGAGCCGGGACGGGCTGCAGGCGGG
GGTGCTGCAGAGGACACGAGGCGGCGGGCTGGAGACATGGACCGCGGCGAGCAAGATACTGAGGAGAGCAGACAAAAATGATGATGGAAA
ATTATCCTTTGAAGAATTCAAAGCATATTTTGCAGATGGTGTTCTCAGTGGAGAAGAATTACACGAGCTTTTCCATACCATTGATACACA
TAATACTAATAATCTTGACACAGAAGAGCTATGTGAATATTTTTCTCAGCACTTGGGCGAGTATGAGAATGTACTAGCAGCACTTGAAGA
CCTGAATCTTTCCATCCTGAAGGCAATGGGCAAAACAAAGAAAGACTACCAAGAAGCCTCCAATTTGGAACAATTCGTAACTAGATTTTT
ATTGAAGGAAACCCTGAATCAGCTGCAGTCTCTCCAGAATTCCCTGGAATGTGCCATGGAAACTACTGAGGAGCAAACCCGTCAAGAAAG
GCAAGGGCCAGCCAAGCCAGAAGTCCTGTCGATTCAATGGCCTGGAAAACGATCAAGCCGCCGAGTCCAGAGACACAACAGCTTCTCCCC
AAACAGCCCTCAGTTTAATGTCAGCGGTCCAGGCTTATTAGAAGAAGACAACCAGTGGATGACCCAGATAAATAGACTCCAGAAATTAAT
TGATAGACTGGAAAAGAAGGATCTCAAACTCGAACCACCAGAAGAAGAAATTATTGAAGGGAATACTAAATCTCACATCATGCTTGTGCA
GCGGCAGATGTCTGTGATAGAAGAGGACCTGGAAGAATTCCAGCTCGCTCTGAAACACTACGTGGAGAGTGCTTCCTCCCAAAGTGGATG
CTTGCGTATTTCTATACAGAAGCTTTCAAATGAATCTCGCTACATGATCTATGAGTTCTGGGAGAATAGTAGTGTATGGAATAGCCACCT
TCAGACAAATTATAGCAAGACATTCCAAAGAAGTAATGTGGATTTCTTGGAAACTCCAGAACTCACATCTACAATGCTAGTTCCTGCTTC
GTGGTGGATCCTGAACAACTAGATGTTCCTAGACATTTTCTTTATGGTTCCAAGTGCAAAACAGGTGTTCTTATCTAAAACGTCAATTAG
AAAATTATCTGCGGTTGTTAATCTACTGTATATTTTTGTTTGGTATATTTACTAAGTGCACTCTTTCAAAACTTATTCTATAACTTTATC
AATTCATGTGAATTTTAGCTCAATTTTCAAAGTTCACTAATATTCTCAATATTTAATGCTAAATGCTTTGCTACATTGTAACTCACCTAA
AACCTTTTAGTGACAAAATCCTAATATGTGGAAAAAAGCATATGCATAAAGGAATAATATTGTGAAAATGAATCTGTTATGATAAAGAAA
AAATAAAGTGGAAACTTTTAGAGTATTACTTCATAGGGCAGATTTTGTAAACTGTCGTATACTGTAAAGGGTTAAATCAGCGTTTTGTGA
TTTTTAAGTAACTGTGAGTGAAGTTTATTCTTCAACAATGTCTACTCCATCCCCAACCCAACTCACAGCCCTATGACTACTATCTTTGCA
TTAGTTAAAAAGTTAGTATATAGGCATCAAACAACCTTGGCTGTAACCTATAGAATCTCTATCCACGTATCAGGTTATAGACTGGTTTTT
CAAAAGTGAACAATCCTGTGATAAGTTGGAGTACCATTTAGTAATACAGCAACATTGTGTCATTTATTAGCATCATAATTCTTTGTTATG
TAAGTTAAATATATCAAGAAAGAAGAGACTGTTTGGAAAAATGTGGTTCAAGTTTTATGCTATATAGTTTTGGTATGCGATACAGACAGC
TAACTTTTCTTATGAAAAATACATATTTGCATGTAAACAATGATTTCAAAATACTTGAAAAATAAAATTTTAACCCAAATGAATAACTAA
GAAATATAAAACAAGCACAAAATCTTAGGGAAGTCATAAAATAGTAGTGAAAGTATTAGACAGAAGACATCTGTTTTCGAATTTCAACAC
TAGAATGACTAAAACTATCTACCTATAGAACTATCTGTAGATAGTATACTATCTACACTCTGCTCAACAAGCTCAGAAATTAAATATTTT
TAATAATAAAAATCTGTTCTGGTTATAAACCTTGCTAATGAAAATACAATACATATAAAAATGTATAGCCATGTTATTTTCTAGTATAAA
TTCCTTTGAAACTATAAGTCTTTGAGGAAAATTATAAGGTAAAATTTTCCTGTTTTTCCCCCTTTGAAAAACTCAGGAAAAAAGGAAGAT
TGAACTAATAAAATTTTATTTCTTAAATATAAATTTGACCTAAAATATTTTCTCAAACTAATTCATGAAACAGCAACTTTTACCAATACC
TTTGTATACTCTCAGTTCTCATTCAGTATAAATAAAATTTTAAAATCCTTTCATAGTTCTATTAGAAATAAGTAGTAAATTTTGATATAT
TGTACATACACACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTGTGTGCCTCTGGTCAACTCTAAGGATGACAG
ACACTGTGTAACAACACCTGGGTCAACTCTTTTAATTTATATACAAAGCAAAGAACAACATTAATGGAGATGCACAATGATTATTCAAAC
AAGCTATATATATGTACAAAGGCAAACAGACACATAACAGTCTCTGCAGACTGATTGTATATAGTAAGAAAAGATCAAAAGACTTTAAAA
CCTAAATGACTTTTGACATACAAACTCTTCTTGAGAATGTTTGTTGTAAATGGTTTCAAAAATACAAATTATAGCCAATCAAAACATTGC
TTTGGTTGGTGCATTTAAGTATCCAACTCAAAAAGCATATCAAATATTTTGGGTACTAGGCAGTTTCCAAAGTAGCATGGTAGTATTACT
TGTTAAAAGGGTTCTGTTTTCATTAACAGTACTAAGTGGAAGGGATCTGCAGATTCCAAACTGGAATAAGCTCTATCATATTCTGAAACA
AGAATTAGAATGACTTGAGAACGGGCAAATAACAAAGCAAACCAATATAATTATATGGTCATTCTGACCCCAGCTCTTATACAAATTATA
CATGTATTTTTGTGTATGTTTGTGAGAGTTGTATGTATGTGAATGTGTGTGAGTGTGTATTCACATACACATATATACTGGAACCTATAG
TAGAAAAGGAAACTAGTAGGGCCAAAAAAAAAAAGAAAAAGAAAAAGAAAAAAGAAAAAAAAAGAAAAAACTGGGACCTAAGTATAAATA
TCTCATCCTAAAGTAAACAATAAGTTTATAGTTAACGAAGATTTTTTTCTATTTAAAACCCCATTTTCCTAAAGAACAAAGTAGTAAAAT
AAAAAAAAATTTAAAAAATTAAAAAATAAAAAAAAGAGGTCACTAAAAGACCAAGATGGGAAACGTAACATGGAATACAAGCTTGAATCT
GGGAAACAAGCTCAAAAAACAGTGAAAAAAAAAGTACTGGTTTAGGAGTTCAAAATTCAGTGAAACAAACTTTTTGCCAATAGACCTAGG
GATCTAAGAAATAGAATTAGGGAGAGTTTACACTTACTTACCTATATATCAGCAGATTTTTCTGGAAGAAACCCTTTTTTTTTTTTTTTT
TAAACAGTAACATCCAGAGTGACAAATTGCAGGAGATTTAATGTATAAAATTTCTAGGAATTAAAAGCTTAAACCCAAAAATTGTTCATC
CATATATAAGAAATTATCGAATTAAAACTTAATGTATGTCAATTATTTTCAAATGTCTAAATTCCTTTGGAAATAAAAATATCAGTTTTA
CTTTGAAATTGCTCAACTTCTGCTATTCATATGGTCTGATTAGTGACATAAGTAGCAGCCGTTTTTCAACTTCAGTTTCATTCACTACCA
TTGTTTCCAAATTATCAATCTCTGCTAGTAATTATGAATTTAAGACCATATTATTATCAAAAACCTAGAGACCAATCATATATCTGAAAA
GAAATACCCATTAAAAATTCTGCCTCCTGTTTATTGAGAACTATGCATTGAACATTCTGAATCATTCTAAGCCTCTGGAGAGACTGTAAT
GATCCATTCATGAGCTGGTATGAAATCAGTGGGAAGCAGAACAACAGAAGGAACTTTAAAAGCAACAAGCAATTATGTACCATATATACA
CTGTAGCAAATATTTTATATTTGAGAGTCTTTACAGCTTACATTTCCATTCCATTATTACAAGTGATGAAAAACAAAAAATTGCAAGTAG
TATGCAAATTATAAATATACAGTCTTCCCACTTCACTAACCAAATTCCTACTTTCCAGTGTTACTTCCCAATTTATGCAGGAAACCTCCT
GCAAAGCTGAAACTGATTAGAAAATTCTTTATATTTTAAAATAGCTCTTTCTCATTTTTAGAGAAGTCAAATAGCCAACCATCAAAATTA
AGAATAAATTGAATTGTCACAGTCCATTACAGTTATTGTTGCTAGATCCACCTCATTTGCAGATGTCCAAACTTAAATTCATCTGTTCTT
AAAATGCTACTTAAAACTTTGGTTGTTTTCCTGTAATATAAAAGAAAAAGTTAATTTATCAATTGATTGAATACAGTTTTTACTAATTAG
TTTATCAAACCAAATACTGTGAACGTACCAGGTGTTTACAGATTTAAATGCATGTTACCATAGAAACTATTAAAGTAACTAGAACTGTCA
AATAACAAAACGGCTCATGTTTTTAAAATATATGTAACTCATTTTAAAATATATTAAATTGTATTCCAAACCTGTTCTTCTGTTTCTGTG
GCACCTAGGTTTAAAATATGTATTAATGTGTAAATCACAAGTAAAATGAATTCTAATGTACAAGTTTGTTTTAAAAAGTGTATGTCAAGC


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FusionGenePPI for TPD52_NECAB1


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
TPD52MAL2, TPD52, TPD52L1, TPD52L2, SAR1A, SEPHS1, YWHAQ, BAG3, SOCS2, SENP2, SRPK2, ARPC1B, PDIA6, PRKACA, AARS, CACYBP, PDCD4, PDLIM5, NXF1, MRPS2, CALU, CLIC4, DUT, ENO2, EZR, NACA2, PAIP1, PHB, PTGES3, UCHL3, HIST1H2BG, DYNC1H1, HNRNPU, TSNAX, MTX2, THOC2, CDH1, PPM1H, MRPS11, MEAF6, ZBTB48, ZNF169, CTNNA3, ZNF133, SOD1NECAB1APP, NECAB3, NECAB2, CIRH1A, IP6K3, KANSL2, MPRIP, RNF138, MCRS1, CCDC6, RAI14


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for TPD52_NECAB1


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for TPD52_NECAB1


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneTPD52C0033578Prostatic Neoplasms1CTD_human