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Fusion gene ID: 39145 |
FusionGeneSummary for TP53INP1_CCDC144B |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: TP53INP1_CCDC144B | Fusion gene ID: 39145 | Hgene | Tgene | Gene symbol | TP53INP1 | CCDC144B | Gene ID | 94241 | 284047 |
| Gene name | tumor protein p53 inducible nuclear protein 1 | coiled-coil domain containing 144B (pseudogene) | |
| Synonyms | SIP|TP53DINP1|TP53INP1A|TP53INP1B|Teap|p53DINP1 | - | |
| Cytomap | 8q22.1 | 17p11.2 | |
| Type of gene | protein-coding | pseudo | |
| Description | tumor protein p53-inducible nuclear protein 1p53-dependent damage-inducible nuclear protein 1p53-inducible p53DINP1stress-induced protein | coiled-coil domain-containing protein 144B | |
| Modification date | 20180523 | 20180329 | |
| UniProtAcc | Q96A56 | ||
| Ensembl transtripts involved in fusion gene | ENST00000448464, ENST00000342697, ENST00000378776, | ENST00000442583, | |
| Fusion gene scores | * DoF score | 2 X 2 X 2=8 | 1 X 1 X 1=1 |
| # samples | 2 | 1 | |
| ** MAII score | log2(2/8*10)=1.32192809488736 | log2(1/1*10)=3.32192809488736 | |
| Context | PubMed: TP53INP1 [Title/Abstract] AND CCDC144B [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | TP53INP1 | GO:0045893 | positive regulation of transcription, DNA-templated | 22470510 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | LD | PRAD | TCGA-YL-A8SJ-01B | TP53INP1 | chr8 | 95942768 | - | CCDC144B | chr17 | 18457580 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| intron-intron | ENST00000448464 | ENST00000442583 | TP53INP1 | chr8 | 95942768 | - | CCDC144B | chr17 | 18457580 | - |
| intron-intron | ENST00000342697 | ENST00000442583 | TP53INP1 | chr8 | 95942768 | - | CCDC144B | chr17 | 18457580 | - |
| intron-intron | ENST00000378776 | ENST00000442583 | TP53INP1 | chr8 | 95942768 | - | CCDC144B | chr17 | 18457580 | - |
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FusionProtFeatures for TP53INP1_CCDC144B |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| TP53INP1 | CCDC144B |
| Antiproliferative and proapoptotic protein involved incell stress response which acts as a dual regulator oftranscription and autophagy. Acts as a positive regulator ofautophagy. In response to cellular stress or activation ofautophagy, relocates to autophagosomes where it interacts withautophagosome-associated proteins GABARAP, GABARAPL1/L2,MAP1LC3A/B/C and regulates autophagy. Acts as an antioxidant andplays a major role in p53/TP53-driven oxidative stress response.Possesses both a p53/TP53-independent intracellular reactiveoxygen species (ROS) regulatory function and a p53/TP53-dependenttranscription regulatory function. Positively regulates p53/TP53and p73/TP73 and stimulates their capacity to induce apoptosis andregulate cell cycle. In response to double-strand DNA breaks,promotes p53/TP53 phosphorylation on 'Ser-46' and subsequentapoptosis. Acts as a tumor suppressor by inducing cell death by anautophagy and caspase-dependent mechanism. Can reduce cellmigration by regulating the expression of SPARC.{ECO:0000269|PubMed:11511362, ECO:0000269|PubMed:22421968,ECO:0000269|PubMed:22470510}. | Lectin that binds to various sugars: galactose > mannose= fucose > N-acetylglucosamine > N-acetylgalactosamine(PubMed:10224141). Acts as a chemoattractant, probably involved inthe regulation of cell migration (PubMed:28301481).{ECO:0000269|PubMed:10224141, ECO:0000269|PubMed:28301481}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for TP53INP1_CCDC144B |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for TP53INP1_CCDC144B |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| TP53INP1 | HIPK2, TP53, ELAVL1, GABARAP, GABARAPL2, MAP1LC3A, SQSTM1, ZBTB9, ASPM, TBC1D4, YEATS2, CSRP2BP | CCDC144B |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for TP53INP1_CCDC144B |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for TP53INP1_CCDC144B |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
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