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Fusion gene ID: 37603 |
FusionGeneSummary for TCF7L2_EIF3D |
Fusion gene summary |
Fusion gene information | Fusion gene name: TCF7L2_EIF3D | Fusion gene ID: 37603 | Hgene | Tgene | Gene symbol | TCF7L2 | EIF3D | Gene ID | 6934 | 8664 |
Gene name | transcription factor 7 like 2 | eukaryotic translation initiation factor 3 subunit D | |
Synonyms | TCF-4|TCF4 | EIF3S7|eIF3-p66|eIF3-zeta | |
Cytomap | 10q25.2-q25.3 | 22q12.3 | |
Type of gene | protein-coding | protein-coding | |
Description | transcription factor 7-like 2HMG box transcription factor 4T-cell factor 4T-cell-specific transcription factor 4hTCF-4transcription factor 7-like 2 (T-cell specific, HMG-box) | eukaryotic translation initiation factor 3 subunit DeIF3 p66eukaryotic translation initiation factor 3, subunit 7 zeta, 66/67kDatranslation initiation factor eIF3 p66 subunit | |
Modification date | 20180527 | 20180523 | |
UniProtAcc | Q9NQB0 | O15371 | |
Ensembl transtripts involved in fusion gene | ENST00000534894, ENST00000536810, ENST00000545257, ENST00000355995, ENST00000543371, ENST00000355717, ENST00000538897, ENST00000349937, ENST00000369397, ENST00000352065, ENST00000369395, ENST00000542695, ENST00000369389, ENST00000369386, ENST00000466338, | ENST00000216190, ENST00000478547, ENST00000541106, ENST00000405442, | |
Fusion gene scores | * DoF score | 9 X 7 X 10=630 | 7 X 8 X 5=280 |
# samples | 15 | 9 | |
** MAII score | log2(15/630*10)=-2.0703893278914 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(9/280*10)=-1.63742992061529 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: TCF7L2 [Title/Abstract] AND EIF3D [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | TCF7L2 | GO:0000122 | negative regulation of transcription by RNA polymerase II | 12799378 |
Hgene | TCF7L2 | GO:0006357 | regulation of transcription by RNA polymerase II | 9727977 |
Hgene | TCF7L2 | GO:0032092 | positive regulation of protein binding | 12799378 |
Hgene | TCF7L2 | GO:0032350 | regulation of hormone metabolic process | 15525634 |
Hgene | TCF7L2 | GO:0042593 | glucose homeostasis | 15525634 |
Hgene | TCF7L2 | GO:0043433 | negative regulation of DNA binding transcription factor activity | 12799378 |
Hgene | TCF7L2 | GO:0045444 | fat cell differentiation | 10937998 |
Hgene | TCF7L2 | GO:0045892 | negative regulation of transcription, DNA-templated | 12799378|15525634 |
Hgene | TCF7L2 | GO:0045944 | positive regulation of transcription by RNA polymerase II | 9065401|19168596 |
Hgene | TCF7L2 | GO:0048625 | myoblast fate commitment | 10937998 |
Tgene | EIF3D | GO:0002191 | cap-dependent translational initiation | 27462815 |
Tgene | EIF3D | GO:0006413 | translational initiation | 17581632 |
Tgene | EIF3D | GO:0075522 | IRES-dependent viral translational initiation | 9573242 |
Tgene | EIF3D | GO:0075525 | viral translational termination-reinitiation | 21347434 |
Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | OV | TCGA-61-1918-01A | TCF7L2 | chr10 | 114799885 | + | EIF3D | chr22 | 36922178 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5CDS-5UTR | ENST00000534894 | ENST00000216190 | TCF7L2 | chr10 | 114799885 | + | EIF3D | chr22 | 36922178 | - |
5CDS-intron | ENST00000534894 | ENST00000478547 | TCF7L2 | chr10 | 114799885 | + | EIF3D | chr22 | 36922178 | - |
5CDS-5UTR | ENST00000534894 | ENST00000541106 | TCF7L2 | chr10 | 114799885 | + | EIF3D | chr22 | 36922178 | - |
5CDS-5UTR | ENST00000534894 | ENST00000405442 | TCF7L2 | chr10 | 114799885 | + | EIF3D | chr22 | 36922178 | - |
5CDS-5UTR | ENST00000536810 | ENST00000216190 | TCF7L2 | chr10 | 114799885 | + | EIF3D | chr22 | 36922178 | - |
5CDS-intron | ENST00000536810 | ENST00000478547 | TCF7L2 | chr10 | 114799885 | + | EIF3D | chr22 | 36922178 | - |
5CDS-5UTR | ENST00000536810 | ENST00000541106 | TCF7L2 | chr10 | 114799885 | + | EIF3D | chr22 | 36922178 | - |
5CDS-5UTR | ENST00000536810 | ENST00000405442 | TCF7L2 | chr10 | 114799885 | + | EIF3D | chr22 | 36922178 | - |
5CDS-5UTR | ENST00000545257 | ENST00000216190 | TCF7L2 | chr10 | 114799885 | + | EIF3D | chr22 | 36922178 | - |
5CDS-intron | ENST00000545257 | ENST00000478547 | TCF7L2 | chr10 | 114799885 | + | EIF3D | chr22 | 36922178 | - |
5CDS-5UTR | ENST00000545257 | ENST00000541106 | TCF7L2 | chr10 | 114799885 | + | EIF3D | chr22 | 36922178 | - |
5CDS-5UTR | ENST00000545257 | ENST00000405442 | TCF7L2 | chr10 | 114799885 | + | EIF3D | chr22 | 36922178 | - |
5CDS-5UTR | ENST00000355995 | ENST00000216190 | TCF7L2 | chr10 | 114799885 | + | EIF3D | chr22 | 36922178 | - |
5CDS-intron | ENST00000355995 | ENST00000478547 | TCF7L2 | chr10 | 114799885 | + | EIF3D | chr22 | 36922178 | - |
5CDS-5UTR | ENST00000355995 | ENST00000541106 | TCF7L2 | chr10 | 114799885 | + | EIF3D | chr22 | 36922178 | - |
5CDS-5UTR | ENST00000355995 | ENST00000405442 | TCF7L2 | chr10 | 114799885 | + | EIF3D | chr22 | 36922178 | - |
5CDS-5UTR | ENST00000543371 | ENST00000216190 | TCF7L2 | chr10 | 114799885 | + | EIF3D | chr22 | 36922178 | - |
5CDS-intron | ENST00000543371 | ENST00000478547 | TCF7L2 | chr10 | 114799885 | + | EIF3D | chr22 | 36922178 | - |
5CDS-5UTR | ENST00000543371 | ENST00000541106 | TCF7L2 | chr10 | 114799885 | + | EIF3D | chr22 | 36922178 | - |
5CDS-5UTR | ENST00000543371 | ENST00000405442 | TCF7L2 | chr10 | 114799885 | + | EIF3D | chr22 | 36922178 | - |
5CDS-5UTR | ENST00000355717 | ENST00000216190 | TCF7L2 | chr10 | 114799885 | + | EIF3D | chr22 | 36922178 | - |
5CDS-intron | ENST00000355717 | ENST00000478547 | TCF7L2 | chr10 | 114799885 | + | EIF3D | chr22 | 36922178 | - |
5CDS-5UTR | ENST00000355717 | ENST00000541106 | TCF7L2 | chr10 | 114799885 | + | EIF3D | chr22 | 36922178 | - |
5CDS-5UTR | ENST00000355717 | ENST00000405442 | TCF7L2 | chr10 | 114799885 | + | EIF3D | chr22 | 36922178 | - |
5CDS-5UTR | ENST00000538897 | ENST00000216190 | TCF7L2 | chr10 | 114799885 | + | EIF3D | chr22 | 36922178 | - |
5CDS-intron | ENST00000538897 | ENST00000478547 | TCF7L2 | chr10 | 114799885 | + | EIF3D | chr22 | 36922178 | - |
5CDS-5UTR | ENST00000538897 | ENST00000541106 | TCF7L2 | chr10 | 114799885 | + | EIF3D | chr22 | 36922178 | - |
5CDS-5UTR | ENST00000538897 | ENST00000405442 | TCF7L2 | chr10 | 114799885 | + | EIF3D | chr22 | 36922178 | - |
5CDS-5UTR | ENST00000349937 | ENST00000216190 | TCF7L2 | chr10 | 114799885 | + | EIF3D | chr22 | 36922178 | - |
5CDS-intron | ENST00000349937 | ENST00000478547 | TCF7L2 | chr10 | 114799885 | + | EIF3D | chr22 | 36922178 | - |
5CDS-5UTR | ENST00000349937 | ENST00000541106 | TCF7L2 | chr10 | 114799885 | + | EIF3D | chr22 | 36922178 | - |
5CDS-5UTR | ENST00000349937 | ENST00000405442 | TCF7L2 | chr10 | 114799885 | + | EIF3D | chr22 | 36922178 | - |
5CDS-5UTR | ENST00000369397 | ENST00000216190 | TCF7L2 | chr10 | 114799885 | + | EIF3D | chr22 | 36922178 | - |
5CDS-intron | ENST00000369397 | ENST00000478547 | TCF7L2 | chr10 | 114799885 | + | EIF3D | chr22 | 36922178 | - |
5CDS-5UTR | ENST00000369397 | ENST00000541106 | TCF7L2 | chr10 | 114799885 | + | EIF3D | chr22 | 36922178 | - |
5CDS-5UTR | ENST00000369397 | ENST00000405442 | TCF7L2 | chr10 | 114799885 | + | EIF3D | chr22 | 36922178 | - |
5CDS-5UTR | ENST00000352065 | ENST00000216190 | TCF7L2 | chr10 | 114799885 | + | EIF3D | chr22 | 36922178 | - |
5CDS-intron | ENST00000352065 | ENST00000478547 | TCF7L2 | chr10 | 114799885 | + | EIF3D | chr22 | 36922178 | - |
5CDS-5UTR | ENST00000352065 | ENST00000541106 | TCF7L2 | chr10 | 114799885 | + | EIF3D | chr22 | 36922178 | - |
5CDS-5UTR | ENST00000352065 | ENST00000405442 | TCF7L2 | chr10 | 114799885 | + | EIF3D | chr22 | 36922178 | - |
5CDS-5UTR | ENST00000369395 | ENST00000216190 | TCF7L2 | chr10 | 114799885 | + | EIF3D | chr22 | 36922178 | - |
5CDS-intron | ENST00000369395 | ENST00000478547 | TCF7L2 | chr10 | 114799885 | + | EIF3D | chr22 | 36922178 | - |
5CDS-5UTR | ENST00000369395 | ENST00000541106 | TCF7L2 | chr10 | 114799885 | + | EIF3D | chr22 | 36922178 | - |
5CDS-5UTR | ENST00000369395 | ENST00000405442 | TCF7L2 | chr10 | 114799885 | + | EIF3D | chr22 | 36922178 | - |
5UTR-5UTR | ENST00000542695 | ENST00000216190 | TCF7L2 | chr10 | 114799885 | + | EIF3D | chr22 | 36922178 | - |
5UTR-intron | ENST00000542695 | ENST00000478547 | TCF7L2 | chr10 | 114799885 | + | EIF3D | chr22 | 36922178 | - |
5UTR-5UTR | ENST00000542695 | ENST00000541106 | TCF7L2 | chr10 | 114799885 | + | EIF3D | chr22 | 36922178 | - |
5UTR-5UTR | ENST00000542695 | ENST00000405442 | TCF7L2 | chr10 | 114799885 | + | EIF3D | chr22 | 36922178 | - |
intron-5UTR | ENST00000369389 | ENST00000216190 | TCF7L2 | chr10 | 114799885 | + | EIF3D | chr22 | 36922178 | - |
intron-intron | ENST00000369389 | ENST00000478547 | TCF7L2 | chr10 | 114799885 | + | EIF3D | chr22 | 36922178 | - |
intron-5UTR | ENST00000369389 | ENST00000541106 | TCF7L2 | chr10 | 114799885 | + | EIF3D | chr22 | 36922178 | - |
intron-5UTR | ENST00000369389 | ENST00000405442 | TCF7L2 | chr10 | 114799885 | + | EIF3D | chr22 | 36922178 | - |
intron-5UTR | ENST00000369386 | ENST00000216190 | TCF7L2 | chr10 | 114799885 | + | EIF3D | chr22 | 36922178 | - |
intron-intron | ENST00000369386 | ENST00000478547 | TCF7L2 | chr10 | 114799885 | + | EIF3D | chr22 | 36922178 | - |
intron-5UTR | ENST00000369386 | ENST00000541106 | TCF7L2 | chr10 | 114799885 | + | EIF3D | chr22 | 36922178 | - |
intron-5UTR | ENST00000369386 | ENST00000405442 | TCF7L2 | chr10 | 114799885 | + | EIF3D | chr22 | 36922178 | - |
intron-5UTR | ENST00000466338 | ENST00000216190 | TCF7L2 | chr10 | 114799885 | + | EIF3D | chr22 | 36922178 | - |
intron-intron | ENST00000466338 | ENST00000478547 | TCF7L2 | chr10 | 114799885 | + | EIF3D | chr22 | 36922178 | - |
intron-5UTR | ENST00000466338 | ENST00000541106 | TCF7L2 | chr10 | 114799885 | + | EIF3D | chr22 | 36922178 | - |
intron-5UTR | ENST00000466338 | ENST00000405442 | TCF7L2 | chr10 | 114799885 | + | EIF3D | chr22 | 36922178 | - |
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FusionProtFeatures for TCF7L2_EIF3D |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
TCF7L2 | EIF3D |
mRNA cap-binding component of the eukaryotic translationinitiation factor 3 (eIF-3) complex, a complex required forseveral steps in the initiation of protein synthesis of aspecialized repertoire of mRNAs (PubMed:27462815). The eIF-3complex associates with the 40S ribosome and facilitates therecruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5to form the 43S pre-initiation complex (43S PIC). The eIF-3complex stimulates mRNA recruitment to the 43S PIC and scanning ofthe mRNA for AUG recognition. The eIF-3 complex is also requiredfor disassembly and recycling of post-termination ribosomalcomplexes and subsequently prevents premature joining of the 40Sand 60S ribosomal subunits prior to initiation (PubMed:18599441,PubMed:25849773). The eIF-3 complex specifically targets andinitiates translation of a subset of mRNAs involved in cellproliferation, including cell cycling, differentiation andapoptosis, and uses different modes of RNA stem-loop binding toexert either translational activation or repression(PubMed:25849773). In the eIF-3 complex, EIF3D specificallyrecognizes and binds the 7-methylguanosine cap of a subset ofmRNAs (PubMed:27462815). {ECO:0000269|PubMed:18599441,ECO:0000269|PubMed:25849773, ECO:0000269|PubMed:27462815}. (Microbial infection) In case of FCV infection, plays arole in the ribosomal termination-reinitiation event leading tothe translation of VP2 (PubMed:18056426).{ECO:0000269|PubMed:18056426}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for TCF7L2_EIF3D |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for TCF7L2_EIF3D |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
TCF7L2 | NLK, JUP, PSEN1, DAZAP2, CTNNB1, CTBP1, PARP1, XRCC6, XRCC5, ELAVL1, MAD2L2, ZBTB33, DAXX, FBLN1, UBE2I, PSMA3, PML, MEN1, USP4, HBP1, AR, FUS, CDC73, RNF138, HIC1, EP300, SMAD7, SETD8, LEF1, RNF43, TLE3, XIAP, IKZF5, PRMT6, UHRF2 | EIF3D | EIF1B, EIF4A2, EIF3A, EIF3L, PHLDA1, EIF3G, EIF3H, EIF3F, USP3, HAX1, CD4, EIF3E, PSMD12, DNAJB11, RAD21, SIRT7, CAND1, EIF3C, EIF3K, EIF3B, EIF3I, EIF3M, NCL, DDX3X, FN1, VCAM1, EIF3J, HNRNPU, RPL23A, RPL35, RPS11, RPS12, RPS18, RPS20, RPS27, RPS28, RPS4X, RPS9, STAU1, REL, TRIM27, SAT1, HOMER3, BEND5, LZTS2, CCDC8, RNF2, ABCE1, FBXW11, EIF3CL, SRSF7, SRSF5, SUPT4H1, NTRK1, HERC2, XPO1, MATR3, GAN, MCM2, BCOR, NANOG, POU5F1, ZNF746, EIF4A1, RAF1, CYLD, DLD, DNM1L, HSD17B10, SOD1, TRIM25, G3BP1, UBE2A |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for TCF7L2_EIF3D |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for TCF7L2_EIF3D |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | TCF7L2 | C0036341 | Schizophrenia | 4 | PSYGENET |
Hgene | TCF7L2 | C0009404 | Colorectal Neoplasms | 2 | CTD_human |
Hgene | TCF7L2 | C0011860 | Diabetes Mellitus, Non-Insulin-Dependent | 2 | CTD_human |
Hgene | TCF7L2 | C0001418 | Adenocarcinoma | 1 | CTD_human |
Hgene | TCF7L2 | C0005586 | Bipolar Disorder | 1 | PSYGENET |
Hgene | TCF7L2 | C0009375 | Colonic Neoplasms | 1 | CTD_human |
Hgene | TCF7L2 | C0020507 | Hyperplasia | 1 | CTD_human |
Hgene | TCF7L2 | C0036337 | Schizoaffective Disorder | 1 | PSYGENET |
Hgene | TCF7L2 | C3495559 | Juvenile arthritis | 1 | CTD_human |