|
Fusion gene ID: 36817 |
FusionGeneSummary for SUV420H1_CPEB4 |
Fusion gene summary |
Fusion gene information | Fusion gene name: SUV420H1_CPEB4 | Fusion gene ID: 36817 | Hgene | Tgene | Gene symbol | SUV420H1 | CPEB4 | Gene ID | 51111 | 80315 |
Gene name | lysine methyltransferase 5B | cytoplasmic polyadenylation element binding protein 4 | |
Synonyms | CGI-85|CGI85|MRD51|SUV420H1 | CPE-BP4|hCPEB-4 | |
Cytomap | 11q13.2 | 5q35.2 | |
Type of gene | protein-coding | protein-coding | |
Description | histone-lysine N-methyltransferase KMT5Bhistone-lysine N-methyltransferase SUV420H1lysine (K)-specific methyltransferase 5Blysine N-methyltransferase 5Blysine-specific methyltransferase 5Bsu(var)4-20 homolog 1suppressor of variegation 4-20 homolog 1 | cytoplasmic polyadenylation element-binding protein 4CPE-binding protein 4 | |
Modification date | 20180524 | 20180523 | |
UniProtAcc | Q17RY0 | ||
Ensembl transtripts involved in fusion gene | ENST00000304363, ENST00000401547, ENST00000405515, ENST00000402789, ENST00000402185, | ENST00000265085, ENST00000520867, ENST00000334035, ENST00000519835, ENST00000522336, ENST00000517880, ENST00000519467, | |
Fusion gene scores | * DoF score | 8 X 3 X 7=168 | 2 X 2 X 2=8 |
# samples | 8 | 2 | |
** MAII score | log2(8/168*10)=-1.0703893278914 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(2/8*10)=1.32192809488736 | |
Context | PubMed: SUV420H1 [Title/Abstract] AND CPEB4 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | SARC | TCGA-3B-A9HR-01A | SUV420H1 | chr11 | 67947599 | - | CPEB4 | chr5 | 173359453 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
Frame-shift | ENST00000304363 | ENST00000265085 | SUV420H1 | chr11 | 67947599 | - | CPEB4 | chr5 | 173359453 | + |
5CDS-intron | ENST00000304363 | ENST00000520867 | SUV420H1 | chr11 | 67947599 | - | CPEB4 | chr5 | 173359453 | + |
5CDS-intron | ENST00000304363 | ENST00000334035 | SUV420H1 | chr11 | 67947599 | - | CPEB4 | chr5 | 173359453 | + |
5CDS-intron | ENST00000304363 | ENST00000519835 | SUV420H1 | chr11 | 67947599 | - | CPEB4 | chr5 | 173359453 | + |
5CDS-intron | ENST00000304363 | ENST00000522336 | SUV420H1 | chr11 | 67947599 | - | CPEB4 | chr5 | 173359453 | + |
5CDS-intron | ENST00000304363 | ENST00000517880 | SUV420H1 | chr11 | 67947599 | - | CPEB4 | chr5 | 173359453 | + |
5CDS-intron | ENST00000304363 | ENST00000519467 | SUV420H1 | chr11 | 67947599 | - | CPEB4 | chr5 | 173359453 | + |
Frame-shift | ENST00000401547 | ENST00000265085 | SUV420H1 | chr11 | 67947599 | - | CPEB4 | chr5 | 173359453 | + |
5CDS-intron | ENST00000401547 | ENST00000520867 | SUV420H1 | chr11 | 67947599 | - | CPEB4 | chr5 | 173359453 | + |
5CDS-intron | ENST00000401547 | ENST00000334035 | SUV420H1 | chr11 | 67947599 | - | CPEB4 | chr5 | 173359453 | + |
5CDS-intron | ENST00000401547 | ENST00000519835 | SUV420H1 | chr11 | 67947599 | - | CPEB4 | chr5 | 173359453 | + |
5CDS-intron | ENST00000401547 | ENST00000522336 | SUV420H1 | chr11 | 67947599 | - | CPEB4 | chr5 | 173359453 | + |
5CDS-intron | ENST00000401547 | ENST00000517880 | SUV420H1 | chr11 | 67947599 | - | CPEB4 | chr5 | 173359453 | + |
5CDS-intron | ENST00000401547 | ENST00000519467 | SUV420H1 | chr11 | 67947599 | - | CPEB4 | chr5 | 173359453 | + |
Frame-shift | ENST00000405515 | ENST00000265085 | SUV420H1 | chr11 | 67947599 | - | CPEB4 | chr5 | 173359453 | + |
5CDS-intron | ENST00000405515 | ENST00000520867 | SUV420H1 | chr11 | 67947599 | - | CPEB4 | chr5 | 173359453 | + |
5CDS-intron | ENST00000405515 | ENST00000334035 | SUV420H1 | chr11 | 67947599 | - | CPEB4 | chr5 | 173359453 | + |
5CDS-intron | ENST00000405515 | ENST00000519835 | SUV420H1 | chr11 | 67947599 | - | CPEB4 | chr5 | 173359453 | + |
5CDS-intron | ENST00000405515 | ENST00000522336 | SUV420H1 | chr11 | 67947599 | - | CPEB4 | chr5 | 173359453 | + |
5CDS-intron | ENST00000405515 | ENST00000517880 | SUV420H1 | chr11 | 67947599 | - | CPEB4 | chr5 | 173359453 | + |
5CDS-intron | ENST00000405515 | ENST00000519467 | SUV420H1 | chr11 | 67947599 | - | CPEB4 | chr5 | 173359453 | + |
Frame-shift | ENST00000402789 | ENST00000265085 | SUV420H1 | chr11 | 67947599 | - | CPEB4 | chr5 | 173359453 | + |
5CDS-intron | ENST00000402789 | ENST00000520867 | SUV420H1 | chr11 | 67947599 | - | CPEB4 | chr5 | 173359453 | + |
5CDS-intron | ENST00000402789 | ENST00000334035 | SUV420H1 | chr11 | 67947599 | - | CPEB4 | chr5 | 173359453 | + |
5CDS-intron | ENST00000402789 | ENST00000519835 | SUV420H1 | chr11 | 67947599 | - | CPEB4 | chr5 | 173359453 | + |
5CDS-intron | ENST00000402789 | ENST00000522336 | SUV420H1 | chr11 | 67947599 | - | CPEB4 | chr5 | 173359453 | + |
5CDS-intron | ENST00000402789 | ENST00000517880 | SUV420H1 | chr11 | 67947599 | - | CPEB4 | chr5 | 173359453 | + |
5CDS-intron | ENST00000402789 | ENST00000519467 | SUV420H1 | chr11 | 67947599 | - | CPEB4 | chr5 | 173359453 | + |
intron-3CDS | ENST00000402185 | ENST00000265085 | SUV420H1 | chr11 | 67947599 | - | CPEB4 | chr5 | 173359453 | + |
intron-intron | ENST00000402185 | ENST00000520867 | SUV420H1 | chr11 | 67947599 | - | CPEB4 | chr5 | 173359453 | + |
intron-intron | ENST00000402185 | ENST00000334035 | SUV420H1 | chr11 | 67947599 | - | CPEB4 | chr5 | 173359453 | + |
intron-intron | ENST00000402185 | ENST00000519835 | SUV420H1 | chr11 | 67947599 | - | CPEB4 | chr5 | 173359453 | + |
intron-intron | ENST00000402185 | ENST00000522336 | SUV420H1 | chr11 | 67947599 | - | CPEB4 | chr5 | 173359453 | + |
intron-intron | ENST00000402185 | ENST00000517880 | SUV420H1 | chr11 | 67947599 | - | CPEB4 | chr5 | 173359453 | + |
intron-intron | ENST00000402185 | ENST00000519467 | SUV420H1 | chr11 | 67947599 | - | CPEB4 | chr5 | 173359453 | + |
Top |
FusionProtFeatures for SUV420H1_CPEB4 |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
SUV420H1 | CPEB4 |
Lectin that binds to various sugars: galactose > mannose= fucose > N-acetylglucosamine > N-acetylgalactosamine(PubMed:10224141). Acts as a chemoattractant, probably involved inthe regulation of cell migration (PubMed:28301481).{ECO:0000269|PubMed:10224141, ECO:0000269|PubMed:28301481}. | Sequence-specific RNA-binding protein that binds to thecytoplasmic polyadenylation element (CPE), an uridine-richsequence element (consensus sequence 5'-UUUUUAU-3') within themRNA 3'-UTR (PubMed:24990967). RNA binding results in a clearconformational change analogous to the Venus fly trap mechanism(PubMed:24990967). Regulates activation of unfolded proteinresponse (UPR) in the process of adaptation to ER stress in liver,by maintaining translation of CPE-regulated mRNAs in conditions inwhich global protein synthesis is inhibited (By similarity).Required for cell cycle progression, specifically for cytokinesisand chromosomal segregation (PubMed:26398195). Plays a role as anoncogene promoting tumor growth and progression by positivelyregulating translation of t-plasminogen activator/PLAT(PubMed:22138752). Stimulates proliferation of melanocytes(PubMed:27857118). In contrast to CPEB1 and CPEB3, does not playrole in synaptic plasticity, learning and memory (By similarity).{ECO:0000250|UniProtKB:Q7TN98, ECO:0000269|PubMed:22138752,ECO:0000269|PubMed:24990967, ECO:0000269|PubMed:26398195,ECO:0000269|PubMed:27857118}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Top |
FusionGeneSequence for SUV420H1_CPEB4 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
Top |
FusionGenePPI for SUV420H1_CPEB4 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
SUV420H1 | YWHAQ, HIST1H4A, SMARCD1, ESR1, SUV420H1, BRD1 | CPEB4 | NDST1, UBE3C, SAV1, BMI1 |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Top |
RelatedDrugs for SUV420H1_CPEB4 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
RelatedDiseases for SUV420H1_CPEB4 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |